LOC110498193 (LOC106561370)


Basic Information

Item Value
gene id LOC110498193
gene name LOC106561370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85831193 ~ 85836115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574820.2
gttaaacctcaTCAAAGAAGAAGTAAACCGACCCTTGTTGTGAACGCGCAGTTCTCTGTCACCCAGTCAGCTGACATCCAGTGCCAGTTTGTTGCTTGTCATTAGGCCCATGTTTTTACGTCGTGTATGAGCAACTGAAAATCTATTTAGTCAAATCAAGTAGCTGATTATTATTAGTCAGTTGTTTTCTAGCTACCTTTATTAGTaagcaaaaaacaacaactgaagaACCAGCCATGGCGCTCAGCGATGCCGACGTACAGAAACAGATCAAGCATATGATGGCCTTCATTGAACAGGAAGCCAATGAGAAAGCAGAAGAAATTGATGCAAAGGCAGAAGAGGAGTTCAACATTGAGAAGGGccgtctggtgcagacacaaaggCTCAAGATCATGGAGTACTATGAGAAAAAAGAAAAGCAGATAGACCAGCAGAAGAAAATTCAGATGTCCAACCTGATGAACCTGGCTCGACTGAAGGTGCTGAAAGCTCGTGATGACATGATTTCGGATCTGCTAACTGAGGCTCGTCAGAGGCTGGCTAACATTGCCAAGGACCCGGCGAGGTACCCTGCGTTGTTGGAGGGGCTAGTTCTGCAGGGATTCTACCAACTGCTGGAGCCCAAAGTGATAATTCGCTGCCGGCAGCAGGACATTGCCATGGTGCAGGCTGCTGTTCAGAAAAATATCCCCATCTATAAAGCTGCTGTGAAGAGCAAAATTGAAGTTGGCATTGACCAAGACCGGCATCTTTCACCAGACATCTCTGGAGGTATTGAGATGTACAACGCTAATGGGAAGATCAAGGTAGCCAACACCCTGGAGAGCAGGCTAGACCTCATGGCCCAGCAGATGATGCCTGAGGTCAGAACGGCTCTGTTCGGTGCCAACCCGAACCGTAAGTTTTTGGACTAAAAGATGGTGATGCTGTTGGAGACAAAGGTTAAGGGATCATTGGAAGTGTTACTGCGAACAAGCGTCTCATTTGGGCTGGATATGTTGAAAGTTGAGCAGAGCCTAAGAACACCCTTTCTCTGATCTTCCCAACTTTAAGCACTTATCTATATGATCTTCCAAAGTAAGAAACTGTTATGAGACACGATGTGAGGGAGAATGTGTGTTGTCTGGTGTTAAGGGTAGGTGGCTTTCACAAGTGTTTTATACTACCTCCTCAGTTTACCACTGCTCCCCTCCCATCACTAAGGGTTGTCTGATTGTCCCCTTACTTTCCCTTGAGGAATAATCAAGTTATTTTTGTTTACTGTAAGGTGTCCAAACACCTAACAGGGTGGCTGCCGCTATTCCTTTTGATGtttgtgtattttgtgtgttgAGTGGGAACATATTGGATTGGAGAATGAATGTCTTTTGTTGTTACCCATGTGATTAACAATACATATGCAACAAAGAAACATGAATATTCACTGTTTGTACACAGATTGTTCATTCAATTCAGATGTTCTCCAATGAAGAATAAAATAGTTATTCCAACCCTATCa

Function

NR:

description
V-type proton ATPase subunit E 1-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574820.2 True 1501 mRNA 0.44 9 85831193 85836115

Neighbor

gene id symbol gene type direction distance location
bida LOC106561376 coding upstream 66162 85755625 ~ 85765031 (+)
wee2 LOC106561372 coding upstream 76982 85748761 ~ 85754211 (+)
agk LOC106561375 coding upstream 96565 85727984 ~ 85734628 (+)
LOC110498123 LOC106561377 coding upstream 119785 85700770 ~ 85711408 (+)
LOC110498104 LOC106561378 coding upstream 236612 85515619 ~ 85594581 (+)
LOC110498211 LOC106561369 coding downstream 9753 85845868 ~ 85900894 (+)
LOC110498230 cecr1 coding downstream 72582 85908697 ~ 85915458 (+)
LOC110498298 LOC106561360 coding downstream 180772 86016887 ~ 86036771 (+)
LOC110498335 LOC106561359 coding downstream 206685 86042800 ~ 86111227 (+)
LOC110498346 LOC106573196 coding downstream 278510 86114625 ~ 86121138 (+)
G196905 NA non-coding upstream 53255 85775488 ~ 85777938 (+)
G196877 NA non-coding upstream 227703 85602573 ~ 85603490 (+)
G196816 NA non-coding upstream 328969 85501891 ~ 85502224 (+)
G196791 NA non-coding upstream 369665 85460837 ~ 85461528 (+)
G196788 NA non-coding upstream 373059 85457908 ~ 85458134 (+)
G196990 NA non-coding downstream 5902 85842017 ~ 85843259 (+)
G197031 LOC106561367 non-coding downstream 114304 85950419 ~ 85950944 (+)
G197036 NA non-coding downstream 122051 85958166 ~ 85961475 (+)
G197037 NA non-coding downstream 123687 85959802 ~ 85963597 (+)
G197043 NA non-coding downstream 132698 85968813 ~ 85969223 (+)
LOC110498034 LOC106573178 other upstream 811159 85010068 ~ 85054392 (+)
G195155 NA other upstream 1230869 84596410 ~ 84600324 (+)
G194395 NA other upstream 2271595 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 2706228 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 3176763 82652633 ~ 82654430 (+)
G197069 NA other downstream 299501 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 1201396 87037511 ~ 87039236 (+)
G198575 NA other downstream 1314087 87150202 ~ 87150490 (+)
G198784 NA other downstream 1657508 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 1699821 87535936 ~ 87536928 (+)

Expression


Co-expression Network