ribc2 (LOC106561368)


Basic Information

Item Value
gene id ribc2
gene name LOC106561368
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85915311 ~ 85920584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038578.1
ttgttggccattagccaatcgGATTTCTTCAACGAGTTCAATGCAcatgaatgcattcaactggcAATTACCTCTCCCACTTGGTTGTGAACAGCAACATAGGTATCCGAATGTCGGGTAGCTTAGCAACGGATATGTTTGCAGAGTGCATTCTAGCCCTGGTCATTTGATTCTCACCACAGCGAGACTAAGGGAAGATTGGAAAATGTACAATGCTGAATTACTTTCGGACCGCATTGCTGCGGCTAGTTTGGAGAGGAGACGTAATCGAGAGATGCAACGTCAAGATAGGATTTTCAATGCTAAAGTTAGAACGATTGGGATAGATAAAGAGGCTCTTGTTTCCCAagtgaatgaaagaaagaaaaaagaacaGGCAGAGGCAGAGTCACTTAAAGCATATGCTGCAGATGCAGTGCGCAACGACAAGGCCGCTTGTCTACTTGATCAACGCCAACTTAAGGATGAGCGTCTGCTGCAGGGAGCCATAGAGGACTTCCGATTGAACTTCCAGCCGCGGTGGAGTCGACGAGAGTATGACTTGAGCAACCCAGACAAAATTAGAGGTCAGGAGAAGATCCAGATGCTGCCGGGGCTGGTGGGTGAGGACCCAGACAGCCAGGGGAGGCTGAagaagcagcaggagcagctCAGAGAGTGGTCCTTCCAGCAGCAGCATGAGTTGGCCACAGCGCGACACCAGCAGAGACAGGAAGGTAGGCTACAACCTGTCCTGATGCTAGACACTGATACACTCACTGCCTCCTCTCAAAATAATCTCCGCCCCTGCCTCACCCTTGCAGAGCAGCAGTATGACCAGGACAGAGTGGACCTGGACAACAAAGCTCTCCAGCTCCAAACaattgaggaggagaggaggagaaccgtAGCCCTCGCTACAAAGAATTTCAATTTGACAAAGGCAACAGAGAATGCAGAGAAGCGGTGGAAGGAgtggcagcagcaggaggaggacaacaggacagACATCCTGAACCAGCTGCAGGGGGAGCTGCTGAGTGAGAGCCAGGAGCAGGGCATCAGTGTGCTGGGTCTGCCCCGCCTCAGTCCCAACAGCTACAAGGGTCTCGCAGACGAGCAGCTGCAGCACATCATCAACTGCCAGCAGCAACAGATAGATGAGAAGAGGGTACATCTACATTGTTTACCTTCAGCAGAGATGTTTTTATTGCAAGAATTCAGGcggagcagcagcaggaggagctcCAGCAGGACCGGTTCCGTGTGGCCTCGGCTCGAACCGCCCTACTAATGGAGAGACAGCAGGCCCGCATCAACAAGCAGCTCCGTCGCACCCAGGATAACACCAACGCACAGCTGGCTGAGGCCCACCATGAACAGACAAAGTATTTGGAGAAGGTGTACACTAACATCCCAGATGACAGTTACTTCTCCCAGTTCAACACCAGCAGTCGATAAAGGATGACAGGGCCTTACTTACTATGCCATGCATTATTAGACTATTATGGAGAAATGTTTCTTGTATTAAAAAGTAAAAATGTAGATAAATGATTTGTAACAAAAACGAACAAATCTGATGTTTTCCTTCCCTTAATTCAAAACTATTTCACAACTAAAAAAATACAATCAAAAAAGTATTCATAGAAAAGTGTGTCTATGAATAAGGCATTGCCTACTGTTCTGCATGCATTTGTCATAACGTGTCCGTATAATTAATTAAAT
>XM_021574882.2
CCACTTTAGGAAATTACCTCTAACAGCATATTCGGCAGTTTAACAAAACATTCTTAATATTATTTTGTTCACAAGCATGATGGCTGCACGTTTAGTTCGTGGTAGACCGACacagcttgttggccattagccaatcgGATTTCTTCAACGAGTTCAATGCAcatgaatgcattcaactggcAATTACCTCTCCCACTTGGTTGTGAACAGCAACATAGGTATCCGAATGTCGGGTAGCTTAGCAACGGATATGTTTGCAGAGTGCATTCTAGCCCTGGTCATTTGATTCTCACCACAGCGAGACTAAGGGAAGATTGGAAAATGTACAATGCTGAATTACTTTCGGACCGCATTGCTGCGGCTAGTTTGGAGAGGAGACGTAATCGAGAGATGCAACGTCAAGATAGGATTTTCAATGCTAAAGTTAGAACGATTGGGATAGATAAAGAGGCTCTTGTTTCCCAagtgaatgaaagaaagaaaaaagaacaGGCAGAGGCAGAGTCACTTAAAGCATATGCTGCAGATGCAGTGCGCAACGACAAGGCCGCTTGTCTACTTGATCAACGCCAACTTAAGGATGAGCGTCTGCTGCAGGGAGCCATAGAGGACTTCCGATTGAACTTCCAGCCGCGGTGGAGTCGACGAGAGTATGACTTGAGCAACCCAGACAAAATTAGAGGTCAGGAGAAGATCCAGATGCTGCCGGGGCTGGTGGGTGAGGACCCAGACAGCCAGGGGAGGCTGAagaagcagcaggagcagctCAGAGAGTGGTCCTTCCAGCAGCAGCATGAGTTGGCCACAGCGCGACACCAGCAGAGACAGGAAGAGCAGCAGTATGACCAGGACAGAGTGGACCTGGACAACAAAGCTCTCCAGCTCCAAACaattgaggaggagaggaggagaaccgtAGCCCTCGCTACAAAGAATTTCAATTTGACAAAGGCAACAGAGAATGCAGAGAAGCGGTGGAAGGAgtggcagcagcaggaggaggacaacaggacagACATCCTGAACCAGCTGCAGGGGGAGCTGCTGAGTGAGAGCCAGGAGCAGGGCATCAGTGTGCTGGGTCTGCCCCGCCTCAGTCCCAACAGCTACAAGGGTCTCGCAGACGAGCAGCTGCAGCACATCATCAACTGCCAGCAGCAACAGATAGATGAGAAGAGGAGAATTCAGGcggagcagcagcaggaggagctcCAGCAGGACCGGTTCCGTGTGGCCTCGGCTCGAACCGCCCTACTAATGGAGAGACAGCAGGCCCGCATCAACAAGCAGCTCCGTCGCACCCAGGATAACACCAACGCACAGCTGGCTGAGGCCCACCATGAACAGACAAAGTATTTGGAGAAGGTGTACACTAACATCCCAGATGACAGTTACTTCTCCCAGTTCAACACCAGCAGTCGATAAAGGATGACAGGGCCTTACTTACTATGCCATGCATTATTAGACTATTATGGAGAAATGTTTCTTGTATTAAAAAGTAAAAATGTAGATAAATGATTTGTAACAAAAACGAACAAATCTGATGTTTTCCTTCCCTTAATTCAAAACTATTTCACAACTAAAAAAATACAATCAAAAAAGTATTCATAGAAAAGTGTGTCTATGAATAAGGCATTGCCTACTGTTCTGCATGCATTTGTCATAACGTGTCCGTATAATTAATTAAAT
>XM_036957655.1
CCACTTTAGGAAATTACCTCTAACAGCATATTCGGCAGTTTAACAAAACATTCTTAATATTATTTTGTTCACAAGCATGATGGCTGCACGTTTAGTTCGTGGTAGACCGACacagcttgttggccattagccaatcgGATTTCTTCAACGAGTTCAATGCAcatgaatgcattcaactggcAATTACCTCTCCCACTTGGTTGTGAACAGCAACATAGGTATCCGAATGTCGGGTAGCTTAGCAACGGATATGTTTGCAGAGTGCATTCTAGCCCTGGTCATTTGATTCTCACCACAGCGAGACTAAGGGAAGATTGGAAAATGTACAATGCTGAATTACTTTCGGACCGCATTGCTGCGGCTAGTTTGGAGAGGAGACGTAATCGAGAGATGCAACGTCAAGATAGGATTTTCAATGCTAAAGTTAGAACGATTGGGATAGATAAAGAGGCTCTTGTTTCCCAagtgaatgaaagaaagaaaaaagaacaGGCAGAGGCAGAGTCACTTAAAGCATATGCTGCAGATGCAGTGCGCAACGACAAGGCCGCTTGTCTACTTGATCAACGCCAACTTAAGGATGAGCGTCTGCTGCAGGGAGCCATAGAGGACTTCCGATTGAACTTCCAGCCGCGGTGGAGTCGACGAGAGTATGACTTGAGCAACCCAGACAAAATTAGAGGTCAGGAGAAGATCCAGATGCTGCCGGGGCTGGTGGGTGAGGACCCAGACAGCCAGGGGAGGCTGAagaagcagcaggagcagctCAGAGAGTGGTCCTTCCAGCAGCAGCATGAGTTGGCCACAGCGCGACACCAGCAGAGACAGGAAGGTAGGCTACAACCTGTCCTGATGCTAGACACTGATACACTCACTGCCTCCTCTCAAAATAATCTCCGCCCCTGCCTCACCCTTGCAGAGCAGCAGTATGACCAGGACAGAGTGGACCTGGACAACAAAGCTCTCCAGCTCCAAACaattgaggaggagaggaggagaaccgtAGCCCTCGCTACAAAGAATTTCAATTTGACAAAGGCAACAGAGAATGCAGAGAAGCGGTGGAAGGAgtggcagcagcaggaggaggacaacaggacagACATCCTGAACCAGCTGCAGGGGGAGCTGCTGAGTGAGAGCCAGGAGCAGGGCATCAGTGTGCTGGGTCTGCCCCGCCTCAGTCCCAACAGCTACAAGGGTCTCGCAGACGAGCAGCTGCAGCACATCATCAACTGCCAGCAGCAACAGATAGATGAGAAGAGGAGAATTCAGGcggagcagcagcaggaggagctcCAGCAGGACCGGTTCCGTGTGGCCTCGGCTCGAACCGCCCTACTAATGGAGAGACAGCAGGCCCGCATCAACAAGCAGCTCCGTCGCACCCAGGATAACACCAACGCACAGCTGGCTGAGGCCCACCATGAACAGACAAAGTATTTGGAGAAGGTGTACACTAACATCCCAGATGACAGTTACTTCTCCCAGTTCAACACCAGCAGTCGATAAAGGATGACAGGGCCTTACTTACTATGCCATGCATTATTAGACTATTATGGAGAAATGTTTCTTGTATTAAAAAGTAAAAATGTAGATAAATGATTTGTAACAAAAACGAACAAATCTGATGTTTTCCTTCCCTTAATTCAAAACTATTTCACAACTAAAAAAATACAATCAAAAAAGTATTCATAGAAAAGTGTGTCTATGAATAAGGCATTGCCTACTGTTCTGCATGCATTTGTCATAACGTGTCCGTATAATTAATTAAAT

Function

NR:

description
RIB43A-like with coiled-coils protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038578.1 False 1704 mRNA 0.48 6 85915311 85920468
XM_021574882.2 False 1689 mRNA 0.48 7 85915311 85920584
XM_036957655.1 True 1776 mRNA 0.48 6 85915311 85920584

Neighbor

gene id symbol gene type direction distance location
LOC110498203 NA coding downstream 71057 85840174 ~ 85844254 (-)
LOC118936424 slc25a18 coding downstream 76511 85835960 ~ 85838800 (-)
LOC110502245 NA coding downstream 110958 85803678 ~ 85804353 (-)
bcl2l13 LOC106561371 coding downstream 112359 85766088 ~ 85802952 (-)
dennd11 kiaa1147 coding downstream 166912 85734259 ~ 85748399 (-)
LOC110498224 LOC106561365 coding upstream 270 85920854 ~ 85926832 (-)
LOC110498255 LOC106561363 coding upstream 21913 85942497 ~ 85948458 (-)
LOC110498273 LOC106561367 coding upstream 28188 85948772 ~ 85952899 (-)
dyrk4 LOC106561362 coding upstream 34924 85955508 ~ 85974164 (-)
LOC110498321 LOC106561361 coding upstream 91574 86012158 ~ 86017564 (-)
G197498 slc25a18 non-coding downstream 78624 85831239 ~ 85843493 (-)
G197441 NA non-coding downstream 161093 85752441 ~ 85754218 (-)
G197424 NA non-coding downstream 169907 85664173 ~ 85745404 (-)
G197394 NA non-coding downstream 230785 85640538 ~ 85684526 (-)
G197328 NA non-coding downstream 431686 85483027 ~ 85483625 (-)
G197552 LOC106561360 non-coding upstream 106306 86026890 ~ 86043305 (-)
G197613 NA non-coding upstream 153689 86074273 ~ 86074839 (-)
G197636 LOC106561359 non-coding upstream 188479 86109063 ~ 86109468 (-)
G197637 NA non-coding upstream 189268 86109852 ~ 86110146 (-)
G197638 NA non-coding upstream 189564 86110148 ~ 86110650 (-)
LOC110498022 LOC106561385 other downstream 1275555 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 1933144 83977965 ~ 83982167 (-)
G195427 NA other downstream 2010860 83881540 ~ 83904451 (-)
G194491 NA other downstream 2299277 83615566 ~ 83616034 (-)
G197554 NA other upstream 39261 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 982452 86903036 ~ 86903956 (-)
G198912 NA other upstream 1401555 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3686253 89606837 ~ 89609890 (-)
G202279 NA other upstream 4456973 90377557 ~ 90441425 (-)

Expression


Co-expression Network