LOC110498224 (LOC106561365)


Basic Information

Item Value
gene id LOC110498224
gene name LOC106561365
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85920854 ~ 85926832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957634.1
ATAATACCAACGTCTCGAGTTATCATCACACCGGTTCTGTTGCTTTGACACTTGACTATGCCATTAAAAACGGAATCATGCAAATAATATATATGAGGTCTATGTGGGTGAAACGTCTATTAGTTTTAGGATGTATTTTATTCCTCAGCTATATATCATTGATTTTGAGGAATGAAACCGACAAAAAGACAGATGAGAGGCCTACTGAGGCCCAAACTATTGATATTGATAGAAGATTTTCTGACTTGGAAAGCAACATCAACAAAGTCTGTGAACGATTTGTTCAAAAACTTTGAACAAAAGCAGGATGCCATTCAGAAAATGCTTGTGGATGAGAGAGACCAGAAAGTTGTGGCAGCTCCGGTCAAATCTCAGAGAGGACAAGATGAACAGAAGCTCAAGCCCCAGCAATCTCCATTGTTTCAGGGCTGGGGAGAGAATCTATCGGATGAGGATCAGGAGGAGGCACAGGCTTTGTTTGAGAAATATGGCTACAATGTTTTCCTCAGCGATCGTCTGCCTCTCAACCGAGAGCTACCAGAGACACGTGAATCCAAATGTTTGGAGAAGAAATACCCCAAGGACCTTCCTAGTATTGCTGTGGTATTGATCTACCTGGACGAGGCCCTGTCTATCATTAAACGGGCCATCCGCAGCATCATCGACCGAACCCCTGAACACCTGCTGAGAGAAATCATTCTGGTGGACGACCACAGCTCCAATGATGATCTGAAGGGGGACCTGGATGTCTATGTCAAATCCATTGAGGCGCAGAATCCTTTGTTTCGCATGGTCAGAGTGAGACATATTGAATCACTGGGTTTAACTCAAGCTCGCATCTCTGGGTGGAGAGCTGCTACTGCGGATGTGGTTGCCATTCTAGACGCTCACATTGAGGTCCACAAGGAGTGGGCGGAGCCTCTGTTGACTCGTATCAAGGCAGACCGGACAGTGGTGGTCTCCCCTGTGTTTGACAGGGTGAATTACTACGACCTGGATGTTGTCCATTACGTCCCAGCAGCCCATGCTTTTGACTGGGCTCTATGGTGTATGTATGAGTCCTTCAGGCCGGAGTGGTACCATCTCAACGACACGTCACTGCCAGGAAAGAGTCCCTCTGTCATGGGAATCATGGTGGTGGACAGGAAATTCCTGGGTGAAATCGGTGCCCTAGATGGTGGAATGAAAGTGTATGGAGGCGAAAATGTCGAACTAGGTGTGCGGGTGTGGCTGTGTGGAGGAAGCATAGAGGTAGTGCCTTGTTCTAAGATCGCCCACATTGAGAGGAACCACAAGCCTTACGCACCTGACCTGAGCATGTCCATGAAGAGGAATGCACTGAGGGCAGCAGAGATCTGGATGGATGAGTACAAACATAATGTCAATATTGCCTGGAACATTCCAATTAAGGATCATGGAATAGATATCGGTGATGTGTCAGAGAGAAAGGAGCTCAgagaaaagctgaaatgtaagCCCTTCAAGTGGTACCTGGAAAATATTTATCCTCAGTTGGACACATGGGACAATATACTGGCCTATGGAGGGATGAAGAACTTGGATGCAAACATATGTATAGATCAAGGACTTTTTCCTGGTCATACACCTATAGCCTTCGACTGCTTCAACTATGGCCCACAGCACACATACTACCACAGTAATGGGGAGCTTTACGTTGGTGGCCTAAAGTCCCACAAGTACAATGACAACAGGTGTTTGGCTGACAGTGGAGAAGACACTTTTCCTGATCTGTACGACTGTAACGAGGCCGTGCAGAAGGGCATGGGCATTCACTGGGACTTCACGCAGGGCAAGGAACTTAAgaacagacaaacaaaaagatGCTTAGAAATACAAAACCAGAAACTTGTGGTCCAGAAATGCACTGGCCAGAAATGGGAAATCCAAAACATCATCAAGCCCTTCTAATGGACCAGCATAGAGGATTCATGTTTGCCTCTAGACTAAACCACATTTTATGTTTGCTATTCTGTTCTATGGGTCACGTTGGACTACTAACCTAAATGTGGCATATGCCTATGCATTGATATAACAGTGCTTATTTAATTTTGTTGAAAGGGAAATGTGCCTTTCTGTCCTTGATTTGGATTGCCATAAATAAAagtagttgtaaaaaaaaaaat
>XM_021574863.2
TAATAATACCAACGTCTCGAGTTATCATCACACCGGTTCTGTTGCTTTGACACTTGACTATGCCATTAAAAACGGAATCATGCAAATAATATATATGAGGTCTATGTGGGTGAAACGTCTATTAGTTTTAGGATGTATTTTATTCCTCAGCTATATATCATTGATTTTGAGGAATGAAACCGACAAAAAGACAGATGAGAGGCCTACTGAGGCCCAAACTATTGATATTGATAGAAGATTTTCTGACTTGGAAAGCAACATCAACAAAGTCTACGATTTGTTCAAAAACTTTGAACAAAAGCAGGATGCCATTCAGAAAATGCTTGTGGATGAGAGAGACCAGAAAGTTGTGGCAGCTCCGGTCAAATCTCAGAGAGGACAAGATGAACAGAAGCTCAAGCCCCAGCAATCTCCATTGTTTCAGGGCTGGGGAGAGAATCTATCGGATGAGGATCAGGAGGAGGCACAGGCTTTGTTTGAGAAATATGGCTACAATGTTTTCCTCAGCGATCGTCTGCCTCTCAACCGAGAGCTACCAGAGACACGTGAATCCAAATGTTTGGAGAAGAAATACCCCAAGGACCTTCCTAGTATTGCTGTGGTATTGATCTACCTGGACGAGGCCCTGTCTATCATTAAACGGGCCATCCGCAGCATCATCGACCGAACCCCTGAACACCTGCTGAGAGAAATCATTCTGGTGGACGACCACAGCTCCAATGATGATCTGAAGGGGGACCTGGATGTCTATGTCAAATCCATTGAGGCGCAGAATCCTTTGTTTCGCATGGTCAGAGTGAGACATATTGAATCACTGGGTTTAACTCAAGCTCGCATCTCTGGGTGGAGAGCTGCTACTGCGGATGTGGTTGCCATTCTAGACGCTCACATTGAGGTCCACAAGGAGTGGGCGGAGCCTCTGTTGACTCGTATCAAGGCAGACCGGACAGTGGTGGTCTCCCCTGTGTTTGACAGGGTGAATTACTACGACCTGGATGTTGTCCATTACGTCCCAGCAGCCCATGCTTTTGACTGGGCTCTATGGTGTATGTATGAGTCCTTCAGGCCGGAGTGGTACCATCTCAACGACACGTCACTGCCAGGAAAGAGTCCCTCTGTCATGGGAATCATGGTGGTGGACAGGAAATTCCTGGGTGAAATCGGTGCCCTAGATGGTGGAATGAAAGTGTATGGAGGCGAAAATGTCGAACTAGGTGTGCGGGTGTGGCTGTGTGGAGGAAGCATAGAGGTAGTGCCTTGTTCTAAGATCGCCCACATTGAGAGGAACCACAAGCCTTACGCACCTGACCTGAGCATGTCCATGAAGAGGAATGCACTGAGGGCAGCAGAGATCTGGATGGATGAGTACAAACATAATGTCAATATTGCCTGGAACATTCCAATTAAGGATCATGGAATAGATATCGGTGATGTGTCAGAGAGAAAGGAGCTCAgagaaaagctgaaatgtaagCCCTTCAAGTGGTACCTGGAAAATATTTATCCTCAGTTGGACACATGGGACAATATACTGGCCTATGGAGGGATGAAGAACTTGGATGCAAACATATGTATAGATCAAGGACTTTTTCCTGGTCATACACCTATAGCCTTCGACTGCTTCAACTATGGCCCACAGCACACATACTACCACAGTAATGGGGAGCTTTACGTTGGTGGCCTAAAGTCCCACAAGTACAATGACAACAGGTGTTTGGCTGACAGTGGAGAAGACACTTTTCCTGATCTGTACGACTGTAACGAGGCCGTGCAGAAGGGCATGGGCATTCACTGGGACTTCACGCAGGGCAAGGAACTTAAgaacagacaaacaaaaagatGCTTAGAAATACAAAACCAGAAACTTGTGGTCCAGAAATGCACTGGCCAGAAATGGGAAATCCAAAACATCATCAAGCCCTTCTAATGGACCAGCATAGAGGATTCATGTTTGCCTCTAGACTAAACCACATTTTATGTTTGCTATTCTGTTCTATGGGTCACGTTGGACTACTAACCTAAATGTGGCATATGCCTATGCATTGATATAACAGTGCTTATTTAATTTTGTTGAAAGGGAAATGTGCCTTTCTGTCCTTGATTTGGATTGCCATAAATAAAagtagttgtaaaaaaaaaaat

Function

NR:

description
probable polypeptide N-acetylgalactosaminyltransferase 8

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957634.1 False 2144 mRNA 0.45 11 85920854 85926830
XM_021574863.2 True 2142 mRNA 0.45 11 85920854 85926832

Neighbor

gene id symbol gene type direction distance location
ribc2 LOC106561368 coding downstream 270 85915311 ~ 85920584 (-)
LOC110498203 NA coding downstream 76600 85840174 ~ 85844254 (-)
LOC118936424 slc25a18 coding downstream 82054 85835960 ~ 85838800 (-)
LOC110502245 NA coding downstream 116501 85803678 ~ 85804353 (-)
bcl2l13 LOC106561371 coding downstream 117902 85766088 ~ 85802952 (-)
LOC110498255 LOC106561363 coding upstream 15665 85942497 ~ 85948458 (-)
LOC110498273 LOC106561367 coding upstream 21940 85948772 ~ 85952899 (-)
dyrk4 LOC106561362 coding upstream 28676 85955508 ~ 85974164 (-)
LOC110498321 LOC106561361 coding upstream 85326 86012158 ~ 86017564 (-)
tigara LOC106561357 coding upstream 209859 86134395 ~ 86139827 (-)
G197498 slc25a18 non-coding downstream 84167 85831239 ~ 85843493 (-)
G197441 NA non-coding downstream 166636 85752441 ~ 85754218 (-)
G197424 NA non-coding downstream 175450 85664173 ~ 85745404 (-)
G197394 NA non-coding downstream 236328 85640538 ~ 85684526 (-)
G197328 NA non-coding downstream 437229 85483027 ~ 85483625 (-)
G197552 LOC106561360 non-coding upstream 100058 86026890 ~ 86043305 (-)
G197613 NA non-coding upstream 147441 86074273 ~ 86074839 (-)
G197636 LOC106561359 non-coding upstream 182231 86109063 ~ 86109468 (-)
G197637 NA non-coding upstream 183020 86109852 ~ 86110146 (-)
G197638 NA non-coding upstream 183316 86110148 ~ 86110650 (-)
LOC110498022 LOC106561385 other downstream 1281098 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 1938687 83977965 ~ 83982167 (-)
G195427 NA other downstream 2016403 83881540 ~ 83904451 (-)
G194491 NA other downstream 2304820 83615566 ~ 83616034 (-)
G197554 NA other upstream 33013 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 976204 86903036 ~ 86903956 (-)
G198912 NA other upstream 1395307 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3680005 89606837 ~ 89609890 (-)
G202279 NA other upstream 4450725 90377557 ~ 90441425 (-)

Expression


Co-expression Network