LOC110498255 (LOC106561363)


Basic Information

Item Value
gene id LOC110498255
gene name LOC106561363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85942497 ~ 85948458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574894.2
TTTCCCTCAGCAATTATCAATGATGTTCTACATCACATATCTGGTCTtaacatgtgtgtttgtgtaatcaTGCTTGTGTTTGTAGGCCTATATGATGTAGCCTAATTGTTTATGAATGTATGTTATCCATTCATGCTTTTGTATATGTACTATTGATATTTGTAAATCAAACAATGAAATCAAACCACAgccggccatgattacagacatctctgtgtcctttgacactatataaactagtgacccgcagtgtttgtcattataacCTGATGAAGACAGCGTGGCTGTTGAAATCTTGGTATTAAATTATTGTGCCTTTTCTTTGTAATGTGTTATGTTAACAGTTGATCTACCTTGTCAACTCTCCATAACTGTTAAGTGAATCAATGGTGATTTGCTTTCTTTTTTTATAGGCACATGTATTCTTTGTTGATTAGATAAGAAGTATTTTATGGCATTACATGGAGGGAGTTGTAACGTCTTTAGAGGGCATAGTTACTGAATCAATGTATATGACAAAGGGACATAACCAGGCTGGTTGTCGACAGGTAGCAATGAAGCTCAACGTCCTGCGAGGAGTGGGAATCACGTTTGGAGCCATTATTCCACTCATGTATATTGTCTATATGAAACAGGCAGTGAGTTCCACTTCCAATACAAAAAGGCTTCACGAAAAAGAGACTGCCAAGACTGTGCTGATGACGAGACTGGAGAGAATTGAAAAGAACCTCAACAAACTATCCGAATTAATAGAATCTAAATATCAGAAAGACCCCCCAACAAGGGAAGAAGTTGTGGTAACAGAGGCAAAGAAGATGGTGGTGCCCATGTTGTATCCCAACTCCTACCTGTTTACAAAGTGGGGTGATGACCTctcagaggaggagcagagagaggccGAGGCCCTGTTCCAGAGATATGGATACAACGTCTTCTTGAGTGACCAACTGCCACTCAACAGAGAGCTGCCAGATACACGAGACAACAGATGCTTGCAGAAGAAATACCCCAAGGACCTTCCTAGTATTGCTGTGGTATTGATCTACCTGGACGAGGCCCTGTCTATCATTAAACGGGCCATCCGCAGCATCATCGACCGAACCCCTGAACACCTGCTGAGAGAAATCATTCTGGTGGATGACCACAGCTCCAATGACCTGGGAGAAAAGCTAGCTGCCTACATAGAGCTCATCCACAAGGAAAGGCCGGGCCTTATAAAAAGGGTGAGACACAAGCAGCAGATGGGACTGACTCAAGCCCGCATCTCAGGGTGGGAGCACGCCACCGCTGATACAGTGGCCATTCTGGATGCCCACATTGAAGTCAACGTGGGGTGGGCAGAGCCACTGCTGGCCAGGATCAAAGCAGACAGGACCACTGTGGTGACTCCGGTGTTTGACAAGGTTGGTTTTGATGACCTGCAGGTGGAGCATTACTGGGCCAATGCACACGGTTTTGACTGGCCCCTGTGGTGCATGTACGAGTCCTTCAAACCAGAGTGGAACGAGCTCCATGATGAATCACAACCAGGGAAGAGTCCTTCTGTCATGGGTATTTTTGTGGCACATCGACTTTTCCTTGGAGAGATTGGGGTACTTGATGGTGGAATGAAAATCTATGGAGGAGAGAATGTTGAGCTGGGGATCAGGGTGTGGCTGTGTGGAGGAAGCATAGAGGTAGTGCCTTGTTCTAAGATCGCACACATTGAGAGGGCACACAAACCGTACGCACCTGACCTGAGTTACATCATGAGAAGGAATGCACTGAGGGTAGCTGCGATCTGGATGGATGACTACAAAAGTAATGTGAACATTGCTTGGAATCTTCCGTTGAAGGATCATGGGATTGATATCGGCGAtgtgtcagagaggaagaagctCAGAGAAAAGCTTGAATGTAAGCCCTTCAAGTGGTACCTGGATAACGTGTATCCTACACTGGCCACCTGGGAGGAGCTAGTGGCCTATGGAGGACTGCAGAATGACCTCCTGCAGAGCCATTGTATTGATGAGGGGACTGTCCCTGGGAATATACCCCTTCTTTATGGATGTCATTTCTATCAACCACAGCAATGTTATTACAACACTGATGGGGAGATCTACGTGGGTGGGATTAAGTCTCACAAGTACAACAACAACCGGTGTCTAGTGGATCCTGGCACTGGAAATATACCAACGCTGCATGATTGTAAACTGGCAGCGGAGAGAGGACTACACAAGCACTGGGACTTCCAACAGGGTCAAGCcatcaggaacacacacacaaatagatgTCTTGAGATTGCCCAGGGACAAAATTCATACTATATGCTGGTCATCCAACAATGCACTGGGCAAAACTGGAGAATTCAACATGTCATAAGAGAGTTCTAAAACACCCCCATGAACAAGTTGTTGGGGTCACATTCCTGAAATTCTAGATTTGACATTTGTGTTATCTATCATAACTGTTTCAAACAATATCTTGccaaaagaaaatacaaaattgATTTTATGCAGGGTATTGACAACAAACATCCAATGTAGACAATTGCTTTATTCTCTTTCTCTGAAAAACATGACACAAACAGACAGAATAAAAGATTGCATTGTAAAATAATCTTGTTGATGGTGGTTCTGATTATAAACTTTTAGCTACCAATGTGTACATAATAAACTAACATGTACCATGCACTGTATATtgaatgcatacacacaaaaatattttttgg
>XM_021574888.2
TTTCCCTCAGCAATTATCAATGATGTTCTACATCACATATCTGGTCTtaacatgtgtgtttgtgtaatcaTGCTTGTGTTTGTAGGCCTATATGATGTAGCCTAATTGTTTATGAATGTATGTTATCCATTCATGCTTTTGTATATGTACTATTGATATTTGTAAATCAAACAATGAAATCAAACCACAgccggccatgattacagacatctctgtgtcctttgacactatataaactagtgacccgcagtgtttgtcattataacCTGATGAAGACAGCGTGGCTGTTGAAATCTTGGTATTAAATTATTGTGCCTTTTCTTTGTAATGTGTTATGTTAACAGTTGATCTACCTTGTCAACTCTCCATAACTGTTAAGTGAATCAATGGTGATTTGCTTTCTTTTTTTATAGGCACATGTATTCTTTGTTGATTAGATAAGAAGTATTTTATGGCATTACATGGAGGGAGTTGTAACGTCTTTAGAGGGCATAGTTACTGAATCAATGTATATGACAAAGGGACATAACCAGGCTGGTTGTCGACAGGTAGCAATGAAGCTCAACGTCCTGCGAGGAGTGGGAATCACGTTTGGAGCCATTATTCCACTCATGTATATTGTCTATATGAAACAGGCAGTGAGTTCCACTTCCAATACAAAAAGGCTTCACGAAAAAGAGACTGCCAAGACTGTGCTGATGACGAGACTGGAGAGAATTGAAAAGAACCTCAACAAACTATCCGAATTAATAGAATCTAAATATCAGAAAGACCCCCCAACAAGGGAAGAAGTTGTGGTAACAGAGGCAAAGAAGATGGTGGTGCCCATGTTGTATCCCAACTCCTACCTGTTTACAAAGTGGGGTGATGACCTctcagaggaggagcagagagaggccGAGGCCCTGTTCCAGAGATATGGATACAACGTCTTCTTGAGTGACCAACTGCCACTCAACAGAGAGCTGCCAGATACACGAGACAACAGATGCTTGCAGAAGAAATACCCCAAGGACCTTCCTAGTATTGCTGTGGTATTGATCTACCTGGACGAGGCCCTGTCTATCATTAAACGGGCCATCCGCAGCATCATCGACCGAACCCCTGAACACCTGCTGAGAGAAATCATTCTGGTGGATGACCACAGCTCCAATGAAGACCTGGGAGAAAAGCTAGCTGCCTACATAGAGCTCATCCACAAGGAAAGGCCGGGCCTTATAAAAAGGGTGAGACACAAGCAGCAGATGGGACTGACTCAAGCCCGCATCTCAGGGTGGGAGCACGCCACCGCTGATACAGTGGCCATTCTGGATGCCCACATTGAAGTCAACGTGGGGTGGGCAGAGCCACTGCTGGCCAGGATCAAAGCAGACAGGACCACTGTGGTGACTCCGGTGTTTGACAAGGTTGGTTTTGATGACCTGCAGGTGGAGCATTACTGGGCCAATGCACACGGTTTTGACTGGCCCCTGTGGTGCATGTACGAGTCCTTCAAACCAGAGTGGAACGAGCTCCATGATGAATCACAACCAGGGAAGAGTCCTTCTGTCATGGGTATTTTTGTGGCACATCGACTTTTCCTTGGAGAGATTGGGGTACTTGATGGTGGAATGAAAATCTATGGAGGAGAGAATGTTGAGCTGGGGATCAGGGTGTGGCTGTGTGGAGGAAGCATAGAGGTAGTGCCTTGTTCTAAGATCGCACACATTGAGAGGGCACACAAACCGTACGCACCTGACCTGAGTTACATCATGAGAAGGAATGCACTGAGGGTAGCTGCGATCTGGATGGATGACTACAAAAGTAATGTGAACATTGCTTGGAATCTTCCGTTGAAGGATCATGGGATTGATATCGGCGAtgtgtcagagaggaagaagctCAGAGAAAAGCTTGAATGTAAGCCCTTCAAGTGGTACCTGGATAACGTGTATCCTACACTGGCCACCTGGGAGGAGCTAGTGGCCTATGGAGGACTGCAGAATGACCTCCTGCAGAGCCATTGTATTGATGAGGGGACTGTCCCTGGGAATATACCCCTTCTTTATGGATGTCATTTCTATCAACCACAGCAATGTTATTACAACACTGATGGGGAGATCTACGTGGGTGGGATTAAGTCTCACAAGTACAACAACAACCGGTGTCTAGTGGATCCTGGCACTGGAAATATACCAACGCTGCATGATTGTAAACTGGCAGCGGAGAGAGGACTACACAAGCACTGGGACTTCCAACAGGGTCAAGCcatcaggaacacacacacaaatagatgTCTTGAGATTGCCCAGGGACAAAATTCATACTATATGCTGGTCATCCAACAATGCACTGGGCAAAACTGGAGAATTCAACATGTCATAAGAGAGTTCTAAAACACCCCCATGAACAAGTTGTTGGGGTCACATTCCTGAAATTCTAGATTTGACATTTGTGTTATCTATCATAACTGTTTCAAACAATATCTTGccaaaagaaaatacaaaattgATTTTATGCAGGGTATTGACAACAAACATCCAATGTAGACAATTGCTTTATTCTCTTTCTCTGAAAAACATGACACAAACAGACAGAATAAAAGATTGCATTGTAAAATAATCTTGTTGATGGTGGTTCTGATTATAAACTTTTAGCTACCAATGTGTACATAATAAACTAACATGTACCATGCACTGTATATtgaatgcatacacacaaaaatattttttg
>XR_005038580.1
TTTCCCTCAGCAATTATCAATGATGTTCTACATCACATATCTGGTCTtaacatgtgtgtttgtgtaatcaTGCTTGTGTTTGTAGGCCTATATGATGTAGCCTAATTGTTTATGAATGTATGTTATCCATTCATGCTTTTGTATATGTACTATTGATATTTGTAAATCAAACAATGAAATCAAACCACAgccggccatgattacagacatctctgtgtcctttgacactatataaactagtgacccgcagtgtttgtcattataacCTGATGAAGACAGCGTGGCTGTTGAAATCTTGGTATTAAATTATTGTGCCTTTTCTTTGTAATGTGTTATGTTAACAGTTGATCTACCTTGTCAACTCTCCATAACTGTTAAGTGAATCAATGGTGATTTGCTTTCTTTTTTTATAGGCACATGTATTCTTTGTTGATTAGATAAGAAGTATTTTATGGCATTACATGGAGGGAGTTGTAACGTCTTTAGAGGGCATAGTTACTGAATCAATGTATATGACAAAGGGACATAACCAGGCTGGTTGTCGACAGGTAGCAATGAAGCTCAACGTCCTGCGAGGAGTGGGAATCACGTTTGGAGCCATTATTCCACTCATGTATATTGTCTATATGAAACAGGCAGTGAGTTCCACTTCCAATACAAAAAGGCTTCACGAAAAAGAGACTGCCAAGACTGTGCTGATGACGAGACTGGAGAGAATTGAAAAGAACCTCAACAAACTATCCGAATTAATAGAATCTAAATATCAGAAAGACCCCCCAACAAGGGAAGAAGTTGTGGTAACAGAGGCAAAGAAGATGGTGGTGCCCATGTTGTATCCCAACTCCTACCTGTTTACAAAGTGGGGTGATGACCTctcagaggaggagcagagagaggccGAGGCCCTGTTCCAGAGATATGGATACAACGTCTTCTTGAGTGACCAACTGCCACTCAACAGAGAGCTGCCAGATACACGAGACAACAGATGCTTGCAGAAGAAATACCCCAAGGACCTTCCTAGTATTGCTGTGGTATTGATCTACCTGGACGAGGCCCTGTCTATCATTAAACGGGCCATCCGCAGCATCATCGACCGAACCCCTGAACACCTGCTGAGAGAAATCATTCTGGTGGATGACCACAGCTCCAATGAAGACCTGGGAGAAAAGCTAGCTGCCTACATAGAGCTCATCCACAAGGAAAGGCCGGGCCTTATAAAAAGGGTGAGACACAAGCAGCAGATGGGACTGACTCAAGCCCGCATCTCAGGGTGGGAGCACGCCACCGCTGATACAGTGGCCATTCTGGATGCCCACATTGAAGTCAACGTGGGGTGGGCAGAGCCACTGCTGGCCAGGATCAAAGCAGACAGGACCACTGTGGTGACTCCGGTGTTTGACAAGGTTGGTTTTGATGACCTGCAGGTGGAGCATTACTGGGCCAATGCACACGGTTTTGACTGGCCCCTGTGGTGCATGTACGAGTCCTTCAAACCAGAGTGGAACGAGCTCCATGATGAATCACAACCAGGGAAGAGTCCTTCTGTCATGGGTATTTTTGTGGCACATCGACTTTTCCTTGGAGAGATTGGGGTACTTGATGGTGGAATGAAAATCTATGGAGGAGAGAATGTTGAGCTGGGGATCAGGGTGTGGCTGTGTGGAGGAAGCATAGAGGTAGTGCCTTGTTCTAAGATCGCACACATTGAGAGGGCACACAAACCGTACGCACCTGACCTGAGTTACATCATGAGAAGGAATGCACTGAGGGTAGCTGCGATCTGGATGGATGACTACAAAAGTAATGTGAACATTGCTTGGAATCTTCCGTTGAAGGATCATGGGATTGATATCGGCGAtgtgtcagagaggaagaagctCAGAGAAAAGCTTGAATGTAAGCCCTTCAAGTGGTACCTGGATAACGTGTATCCTACACTGGCCACCTGGGAGGAGCTAGTGGCCTATGGAGGACTGCAGAATGACCTCCTGCAGAGCCATTGTATTGATGAGGGGACTGTCCCTGGGAATATACCCCTTCTTTATGGATGTCATTTCTATCAACCACAGCTTCTTATCCACAGCAATGTTATTACAACACTGATGGGGAGATCTACGTGGGTGGGATTAAGTCTCACAAGTACAACAACAACCGGTGTCTAGTGGATCCTGGCACTGGAAATATACCAACGCTGCATGATTGTAAACTGGCAGCGGAGAGAGGACTACACAAGCACTGGGACTTCCAACAGGGTCAAGCcatcaggaacacacacacaaatagatgTCTTGAGATTGCCCAGGGACAAAATTCATACTATATGCTGGTCATCCAACAATGCACTGGGCAAAACTGGAGAATTCAACATGTCATAAGAG

Function

NR:

description
probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574894.2 False 2710 mRNA 0.44 11 85942497 85948458
XM_021574888.2 False 2712 mRNA 0.44 11 85942498 85948458
XR_005038580.1 True 2381 mRNA 0.46 11 85942843 85948458

Neighbor

gene id symbol gene type direction distance location
LOC110498224 LOC106561365 coding downstream 15665 85920854 ~ 85926832 (-)
ribc2 LOC106561368 coding downstream 21913 85915311 ~ 85920584 (-)
LOC110498203 NA coding downstream 98243 85840174 ~ 85844254 (-)
LOC118936424 slc25a18 coding downstream 103697 85835960 ~ 85838800 (-)
LOC110502245 NA coding downstream 138144 85803678 ~ 85804353 (-)
LOC110498273 LOC106561367 coding upstream 314 85948772 ~ 85952899 (-)
dyrk4 LOC106561362 coding upstream 7050 85955508 ~ 85974164 (-)
LOC110498321 LOC106561361 coding upstream 63700 86012158 ~ 86017564 (-)
tigara LOC106561357 coding upstream 188233 86134395 ~ 86139827 (-)
ccnd2a LOC106561356 coding upstream 193263 86141721 ~ 86420584 (-)
G197498 slc25a18 non-coding downstream 105810 85831239 ~ 85843493 (-)
G197441 NA non-coding downstream 188279 85752441 ~ 85754218 (-)
G197424 NA non-coding downstream 197093 85664173 ~ 85745404 (-)
G197394 NA non-coding downstream 257971 85640538 ~ 85684526 (-)
G197328 NA non-coding downstream 458872 85483027 ~ 85483625 (-)
G197552 LOC106561360 non-coding upstream 78432 86026890 ~ 86043305 (-)
G197613 NA non-coding upstream 125815 86074273 ~ 86074839 (-)
G197636 LOC106561359 non-coding upstream 160605 86109063 ~ 86109468 (-)
G197637 NA non-coding upstream 161394 86109852 ~ 86110146 (-)
G197638 NA non-coding upstream 161690 86110148 ~ 86110650 (-)
LOC110498022 LOC106561385 other downstream 1302741 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 1960330 83977965 ~ 83982167 (-)
G195427 NA other downstream 2038046 83881540 ~ 83904451 (-)
G194491 NA other downstream 2326463 83615566 ~ 83616034 (-)
G197554 NA other upstream 11387 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 954578 86903036 ~ 86903956 (-)
G198912 NA other upstream 1373681 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3658379 89606837 ~ 89609890 (-)
G202279 NA other upstream 4429099 90377557 ~ 90441425 (-)

Expression


Co-expression Network