LOC110498273 (LOC106561367)


Basic Information

Item Value
gene id LOC110498273
gene name LOC106561367
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85948772 ~ 85952899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574904.2
GACCCTTCTGACTTGCCGTACCAAGAAGCGCCAGAAGAAACATGGCGGCCGTTGCGCTCGTTAGCCGTCCTGCGAGTGTCCTTCCCAGGTTTTCACGTTCCTGCTCCCCTGTGGTGCTATCAGCCATCCCTGTGACAGTCCAGCAGAGAACGGTCCACCATGCTGTCATCCCCAAAGGGAAAGGGGGGCGCTCCTCCTCCAGTGGGGTAGCAGCCACAGTCTTCGGAGCCACCGGCTTCCTGGGAAGATATGTTGTCAACCGCCTGGGTCGTATGGGTTCTCAGATTGTGATTCCTCACCGGTGTGACCAGTATGACCTCATGTATCTCAGGCCCATGGGGGATCTAGGACAGGTCATCTTTATGGAGTGGGATGCCAGGAACAAGGATTCTATCAGAAAAGCATTGGCTCACTCCAATGTGGTCATCAACCTGGTGGGACGAGAGTGGGAAACCAAGAACTATCCCTTTGAGGACACCTACGTGAGCATCCCTCAGCAGATTGCCATAGCCACCCGGGAGGCAGGCATCACAAAGCTGATCCATATATCTCACCTCAACGCTGACATCCGCAGCCCCTCCAAATACCTTAGGAATAAGGCAGTAGGTGAGACAGCTGTGAGAGATGAATTCCCTGATGCCATCATCATGAAGCCTGCTGAGATGTTTGGAAGGGAGGACAGATTCTTCAACCATTTTGCCAACATGCGCTGGTTTGGGAAAGCTGTGCCTCTCATCTCCATGGGGAAGAAGACGGTGAAGCAGCCTGTTCATGTGGTAGATGTGGCCAAGGCTATCATCAACGCCATCAAGGACCCTGATGCCAATGGCAAGACATATGCACTAGTTGGACCAAACCGTTATCTCCTTCATGACCTGGTGGAGTACGTGTATGCTGTGGCACACAGGCCCTTTGTGCCCTACCCTCTCCCACGCCCTCTCTATCATTTTGTTGCACGTTTCTTTGCAATGAACCCATTCGAGCCTTGGACAACTCCTGACAAAGTAGATCGATTCCATACCACAGATATGAAGTATCCAGGGCTTCCTGGCTTAGAGGACCTAGGCATTATCCCTGCCTCCATAGAGCAGAAAGCTATCGAGGTCCTGCGTCGCCATCGCCGCTTCCGCTTCTTGGAGGCTGAGTTGGCCGATACCAAGCCAGCCAAGACAGTCAACTATTGAGTAGCCCGTCTTGTCTGAccgcccaacaccaccaccatagcCACAGGCTGATCCTCCTATACAACTGTGCTGTCTTCTTTTACAAATACTCTgtacataaataaataacagaTGATCGTCTAAAACTA

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like

GO: NA

KEGG:

id description
K03953 NDUFA9; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574904.2 True 1312 mRNA 0.52 11 85948772 85952899

Neighbor

gene id symbol gene type direction distance location
LOC110498255 LOC106561363 coding downstream 314 85942497 ~ 85948458 (-)
LOC110498224 LOC106561365 coding downstream 21940 85920854 ~ 85926832 (-)
ribc2 LOC106561368 coding downstream 28188 85915311 ~ 85920584 (-)
LOC110498203 NA coding downstream 104518 85840174 ~ 85844254 (-)
LOC118936424 slc25a18 coding downstream 109972 85835960 ~ 85838800 (-)
dyrk4 LOC106561362 coding upstream 2609 85955508 ~ 85974164 (-)
LOC110498321 LOC106561361 coding upstream 59259 86012158 ~ 86017564 (-)
tigara LOC106561357 coding upstream 183792 86134395 ~ 86139827 (-)
ccnd2a LOC106561356 coding upstream 188822 86141721 ~ 86420584 (-)
LOC118936857 NA coding upstream 448470 86401369 ~ 86404155 (-)
G197498 slc25a18 non-coding downstream 112085 85831239 ~ 85843493 (-)
G197441 NA non-coding downstream 194554 85752441 ~ 85754218 (-)
G197424 NA non-coding downstream 203368 85664173 ~ 85745404 (-)
G197394 NA non-coding downstream 264246 85640538 ~ 85684526 (-)
G197328 NA non-coding downstream 465147 85483027 ~ 85483625 (-)
G197552 LOC106561360 non-coding upstream 73991 86026890 ~ 86043305 (-)
G197613 NA non-coding upstream 121374 86074273 ~ 86074839 (-)
G197636 LOC106561359 non-coding upstream 156164 86109063 ~ 86109468 (-)
G197637 NA non-coding upstream 156953 86109852 ~ 86110146 (-)
G197638 NA non-coding upstream 157249 86110148 ~ 86110650 (-)
LOC110498022 LOC106561385 other downstream 1309016 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 1966605 83977965 ~ 83982167 (-)
G195427 NA other downstream 2044321 83881540 ~ 83904451 (-)
G194491 NA other downstream 2332738 83615566 ~ 83616034 (-)
G197554 NA other upstream 6946 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 950137 86903036 ~ 86903956 (-)
G198912 NA other upstream 1369240 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3653938 89606837 ~ 89609890 (-)
G202279 NA other upstream 4424658 90377557 ~ 90441425 (-)

Expression


Co-expression Network