LOC110498321 (LOC106561361)


Basic Information

Item Value
gene id LOC110498321
gene name LOC106561361
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86012158 ~ 86017564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957704.1
acgggctcaagggtaatgactggagcagaattaTTCCATTCgcttcgttccagccattattatgagccgttctcccctcagcagccttcacTGATCTACAGAGCCAAGAACCAATTGAATTACTCAGACTTGATGGAGCTTGATGATGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGCACAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG
>XM_036957707.1
AGCacaagaggttggtggcaccttaattgaggaggacgggctcaagggtaatgactggagcagaattaTTCCATTCgcttcgttccagccattattatgagccgttctcccctcagcagccttcacTGATCTACAGAGCCAAGAACCAATTGAATTACTCAGACTTGATGGAGCTTGATGATGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG
>XM_021574957.2
TAGAAGCATGTGGATTTGTACATTTTTATTCGTAGAATAATGGTATTGAGTAATTAATAATACATATTTTAACATTATGCCTATGTAAAGTTACACAGAACGAATCCCCTAAATAGAAACCCAAGATATACATGTGAAAGATTCAGTTTGTCGCGGGATAGCTTGAAAAAAAACAACATGCGAAATTGTACTGTTTTATTTCAATGTGGTCGTTTATCTAAGTTATTCAGTATTTCATTTTGTTTCTAGTTTGGACACTGTTAAGAGACTTAATTTACGTCATTAAGTAACTAGCTACTAGTAGCGTTTGGTTTCTCAAGCTGGCTGAATACGATATTATGGCTCGACCAACAAGAGCCAAGAACCAATTGAATTACTCAGACTTGATGGAGCTTGATGATGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGCACAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG
>XM_036957722.1
TAGAAGCATGTGGATTTGTACATTTTTATTCGTAGAATAATGGTATTGAGTAATTAATAATACATATTTTAACATTATGCCTATGTAAAGTTACACAGAACGAATCCCCTAAATAGAAACCCAAGATATACATGTGAAAGATTCAGTTTGTCGCGGGATAGCTTGAAAAAAAACAACATGCGAAATTGTACTGTTTTATTTCAATGTGGTCGTTTATCTAAGTTATTCAGTATTTCATTTTGTTTCTAGTTTGGACACTGTTAAGAGACTTAATTTACGTCATTAAGTAACTAGCTACTAGTAGCGTTTGGTTTCTCAAGCTGGCTGAATACGATATTATGGCTCGACCAACAAGTGTGATGAATGATGACTATTTGTTCTCGTCAAAAGAGCCAAGAACCAATTGAATTACTCAGACTTGATGGAGCTTGATGATGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGCACAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG
>XM_036957727.1
TAGAAGCATGTGGATTTGTACATTTTTATTCGTAGAATAATGGTATTGAGTAATTAATAATACATATTTTAACATTATGCCTATGTAAAGTTACACAGAACGAATCCCCTAAATAGAAACCCAAGATATACATGTGAAAGATTCAGTTTGTCGCGGGATAGCTTGAAAAAAAACAACATGCGAAATTGTACTGTTTTATTTCAATGTGGTCGTTTATCTAAGTTATTCAGTATTTCATTTTGTTTCTAGTTTGGACACTGTTAAGAGACTTAATTTACGTCATTAAGTAACTAGCTACTAGTAGCGTTTGGTTTCTCAAGCTGGCTGAATACGATATTATGGCTCGACCAACAAGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGCACAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG
>XR_002469817.2
TAGAAGCATGTGGATTTGTACATTTTTATTCGTAGAATAATGGTATTGAGTAATTAATAATACATATTTTAACATTATGCCTATGTAAAGTTACACAGAACGAATCCCCTAAATAGAAACCCAAGATATACATGTGAAAGATTCAGTTTGTCGCGGGATAGCTTGAAAAAAAACAACATGCGAAATTGTACTGTTTTATTTCAATGTGGTCGTTTATCTAAGTTATTCAGTATTTCATTTTGTTTCTAGTTTGGACACTGTTAAGAGACTTAATTTACGTCATTAAGTAACTAGCTACTAGTAGCGTTTGGTTTCTCAAGCTGGCTGAATACGATATTATGGCTCGACCAACAAGAGCCAAGAACCAATTGAATTACTCAGACTTGATGGAGCTTGATGATGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGGTCAGGATTCAAAGAACACAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGCACAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG
>XM_036957718.1
ACCAAAGTCATGGTTTGCTCTATTTGGTAGGCTTGAAGCAATATGGGTGGCATGTTTAAATGGAAGTCGCTGTGCTTGACAGCCTTCTTCAACCGGCGTGTGTTCATTAGTCGGATTCCGTGTCAAAACGTTTCGCAACGGAAACCTTTCACAGTTTAATATATGAaccaaatggaagcaaacggaacggagagggaccaacctacatttgtccaatataaactatagttttcgttgcaaaacgttttctgTTTGGAGTAAACAATTTGTTGCCAAACGTTTGTCAATAGACCAAACGTTTTCCAATGGAATCAGACTAATGAATACATCCCTGATCGTTCAGAACAGCACCGTTTCGGTTTAATTGAACATTCCACTAACCTACGGTTTTTCGTTGAAGAGCCAAGAACCAATTGAATTACTCAGACTTGATGGAGCTTGATGATGATGAAGATTTTGCCTGTATGAAAGGGCCTTCCAGCAAGAAAGCCCGGGTCCTTGTCAAAGAACCACAGAGAGACAAGGGTCTGCATCAATCAAGCAAATCTTTCGAACTTCATGAGGTCACAAGTGAGTGGGGATCCAATGTCAACCCCTCCAGCCAGAGATGGGCAGCTGTCAAAGCTAAAGATCAACAGAGATCCATACTGAAAGTGGAGAGGATCAGCCAGGTTGAGAGTGGGCGGGAGGATAAGGATTACCAGCCTACCTGCATACCACAGAGTTGTAGTCCGACTCCAGCAACATCAAAGCCTGTGTCAACTCAGAGGAAGCTTGCTGACACTCCCACTTTACCTGTTAGATCATCCCCTATCAGCCCAGTAGGTGGCAGGCTTCTAAAGTGGAATCCACCAGCACAGAGTGGAATAAGTCCCAACTCAATCCTGAATTCCACCACAAAGTCTCCGGGACAAGGCTTGCGACTGGGATTGTCCCGCTTAGCAAGGGTCAAACCTCTGCACCCCACTGCTAGTAGTAACTGACTCTTGCCCTATTAAACAGAGTGAAGTCAGAATCTCTTTTTCTTTGGTGTACTGTGTGTTTAGCCTGTTACTCTTGTGTTGCATTGCTAATATTGGAGTTCTGTAATCATTTTTGTTTAAATGTTGTATCTAGTGATTGCTATTCATCAAAATGTttcttttttaaacatttgtttcTTACCATG

Function

NR:

description
RAD51-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957704.1 False 869 mRNA 0.46 6 86012158 86016392
XM_036957707.1 False 899 mRNA 0.46 6 86012158 86016427
XM_021574957.2 False 1123 mRNA 0.41 6 86012158 86016810
XM_036957722.1 False 1158 mRNA 0.41 6 86012158 86016810
XM_036957727.1 False 1076 mRNA 0.41 5 86012158 86016810
XR_002469817.2 False 1142 mRNA 0.41 6 86012158 86016810
XM_036957718.1 True 1168 mRNA 0.44 6 86012158 86017564

Neighbor

gene id symbol gene type direction distance location
dyrk4 LOC106561362 coding downstream 37994 85955508 ~ 85974164 (-)
LOC110498273 LOC106561367 coding downstream 59259 85948772 ~ 85952899 (-)
LOC110498255 LOC106561363 coding downstream 63700 85942497 ~ 85948458 (-)
LOC110498224 LOC106561365 coding downstream 85326 85920854 ~ 85926832 (-)
ribc2 LOC106561368 coding downstream 91574 85915311 ~ 85920584 (-)
tigara LOC106561357 coding upstream 119127 86134395 ~ 86139827 (-)
ccnd2a LOC106561356 coding upstream 124157 86141721 ~ 86420584 (-)
LOC118936857 NA coding upstream 383805 86401369 ~ 86404155 (-)
setd6 setd6 coding upstream 502458 86520022 ~ 86526770 (-)
LOC110498617 LOC106561447 coding upstream 640450 86658014 ~ 86676250 (-)
G197498 slc25a18 non-coding downstream 175471 85831239 ~ 85843493 (-)
G197441 NA non-coding downstream 257940 85752441 ~ 85754218 (-)
G197424 NA non-coding downstream 266754 85664173 ~ 85745404 (-)
G197394 NA non-coding downstream 327632 85640538 ~ 85684526 (-)
G197328 NA non-coding downstream 528533 85483027 ~ 85483625 (-)
G197552 LOC106561360 non-coding upstream 9326 86026890 ~ 86043305 (-)
G197613 NA non-coding upstream 56709 86074273 ~ 86074839 (-)
G197636 LOC106561359 non-coding upstream 91499 86109063 ~ 86109468 (-)
G197637 NA non-coding upstream 92288 86109852 ~ 86110146 (-)
G197638 NA non-coding upstream 92584 86110148 ~ 86110650 (-)
G197554 NA other downstream 48493 85959845 ~ 85963665 (-)
LOC110498022 LOC106561385 other downstream 1372402 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2029991 83977965 ~ 83982167 (-)
G195427 NA other downstream 2107707 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 885472 86903036 ~ 86903956 (-)
G198912 NA other upstream 1304575 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3589273 89606837 ~ 89609890 (-)
G202279 NA other upstream 4359993 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 5571648 91589212 ~ 91591049 (-)

Expression


Co-expression Network