LOC110498335 (LOC106561359)


Basic Information

Item Value
gene id LOC110498335
gene name LOC106561359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86042800 ~ 86111227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957747.1
AATCTCTCTCCTCGCTCCATAGTATCCCTGAACGTCACAGCAGAGTCCCAAGTTCCTAAAAGTTGGGCAACGACTGAACATCAAGAATAGTGGACAAGTTGCTGCATAGATTTACGGGAGTTTTGTAGAAAAGGTTCTCTTCTTTCAGATCCAGAATGCTGAAGCCAGGATGGATCCTACAGGTCATCTGAGACGGTCCGCGTGTTCTCCCTGTTCTCCGTCTGCGACGGCCCCCTCATCCCCGAGCCTCGTCCCTCGGGGCCCCATCTGGCTCTCCGTCTTCCGGCAGCAGCCCCCAGTTGCGGAGTAGCAGTGGAAAGGCGACCCTGTAAATATGTCTGGATGGAGGTCTCAATGGCGTCTCGTCCTGCTGAACTCCCTGACCTGCGGCCTGGAGATTTGCGTGGCAGCTGGGATCACGTACGTTCCCCCCCTGTTGCTGGAGGCTGGGGTAGAGGAACAGTACATGACTATGGTACTAGGTATCGGCCCAGTGTTAGGTCTCATCTTCATCCCTCTGATTGGCTCAGCCAGTGACCACTGCAACAGCAGCTACGGCCGCCGCCGGCCCTTCATCTGGCTGCTGTCCCTGGGAGTCCTCTTAGCCCTCCTCATCATCCCCCATGCCGACCTGCTGGCTGCCTACTTCACCTGGGGCGGATGCGCCCTGCAGGTAGCCTTCCTCATCCTCGGTGTGGGCCTGCTCGACTTCTGTGGCCAGGTGTGCTTCACTCCGCTGGAGGCGCTCCTGTCTGACCTGTACCGCAATGAGGAGGACTGCAACCAGGCCTTTGCCATGTTCTCCTTTATGGTCAGCCTGGGAGGCTGTGTGGGCTACCTGCTGCCTGCGCTGGACTGGAGCCGGGGCCTGCTGTCAGTCTACCTGGGTGGCCAGGCAGAGTGCCTCTTCTTCATGCTCATCCTCATCTTCGTGACCAGCGTGCTGATCACCATGAGGGTGTCGGAGGAGCCGCCGTGCACCGCGGCCCTGGAGCCTGGTCCTCTCTTGGAGGCAGGTCGCTGTGGTGTGCCGCGCTCCTGCTGCTACCTGCTCAAGTCGATTCCGCTACTGTGCCTGCTGAGGACGTGCTGGTCCATGACTCCGGCCATCTACCGCAGCTACTGCCACGTGCCCCGGGTGATGAGGCAGCTGTGCATGGCCCAGCTCTGCAGCTGGATGGCCGTCATGTCCTTCATGCTCTTTTACACAGATTTTATGGGGGAGGGGCTGTACGAAGGCATGCCCAGCGCCGCCCCCGGGACCGCCTCCAGGCAGCGCTACGAGGATGGCATCCGTATGGGCAGCCTGGGCCTGTTCTTTCAGTGTGCTACCTCAACCGTCTTCTCCCTGCTCATGAGCCGACTGGTTCGCCATTTTGGCTCGCGCCAGGTCTACCTGAGCAGCATGGTGAGCTTCACCATCtctgccctggtcatatgtatGTCCAAGAGTGTGGTCCTGGTCAGCCTGATGTCAGCTCTGACAGGCTTTGCCTATGCCACGCTGCAGACGCTGCCCTACACCCTCACATGTCACTACCACAAGGAAATGGAGGTTTACATGCCAAATAAGAAAACCAAAAACATGCTTAAGAACGGGATTGCGGTCAAGCGGGACTCGATCACTCATTTGACAGCCATGGACGAGGAGGGGGGCCTGACCCACAAACTGGGGGACACCAAAGGGCATGCCATCTTCAGCCAGGAAGACTCAGACTACTACCCCCCTCCCCACGGCCAGAATGGATCGTCCCTCAGCGCCACAGCCCCCGAGCAGGAGGAACCGGAGGGCTACGAGAAGCGCGGTGTAGGGTTGGACTTTGCCATCCTGGACAgcaccttcctcctctctcagGTCTTTCCCACTCTTTTCATGGGCATGATTGTTCAATTCACAAAGTCCGTCACTGCCTATATGGCCTCCTCCGCCATCTTCGGCATCATCGCCATTTATCTGGCCAACCAGATCATCTTTGACCAAAAGGACCTCAATAGCTGAAAGATTCAGTAACCAGGAGTGAAGGAATGCACGACTGCTTCCAGCATGCAACACTCCAGTGTCATCGCTGGCCGTTGCTATGGCTTTACCAACACATTGCAATGAGGCAGCCTGTCTGTacgtttgtatgtatgtgtgctgCAGAATTAAAAGAAAATGTAAACCCGTGACAATTGTTACCTCCAGAGATTACTGCAGGCAGTTACTATGGCTACAAGAGAGAGACTGGCTGGCATTAGCTGGTctgttgacactgtctgtgtACTTAAGAGCGTTTCTCACCTTGTTCCCCTCAGTCACATAGAAGACCGCTCAGATAGGTACCTTCACCTTCTCCTCAGGTACAACTAGCTACACAGCTTGATCAGACTCCATCAGACCTTAGACAACTGAAATTATGTATTACCATTTTACTCTCATCTATGTGTGAAGTGGTGGAGTTTGTCAATGCTATATCTTTAAAATAGTCTGCTATTAGTCGAAGTCAACAGGAGATTATTGGTCAGTTCTCATGCAGACTGGCCGAGGAAGATAGGAACAAGTTAATCTGGAGAGCCCATTACCTGCTTGGGAAAGAatttctgtctgtttgttgttATCAGCCAGGTTGAAATATTGGGAATGTTAAGTGTCACTGGCCCCTAGTGTTGGATGTTTTTTGGGAATTAACAGGTTTAtcatatatattttgtatatgaATACAGTACATATATGTATATCCCTATGGGAATGTATTATGCGACCTGTTTGGTAGAGGTCATCTATGAGGTAATCTGTGTAACTGCATTGTTGTTAGGATGAAGTGGTTCAAAGCTTTCATTGGaatttctttctccctcttttcaAGAAATATCAGACAGTGCCATTTAGTGCCATTCATTACATAATCTCTACTGCCATTATCATCCCATGTTCAACCTCATGACAATCTAGGAAAGTAAATGAGGTGAATTATCCAACACTTTAAAAATCCAGGTACACTTATTTTCGGAACTCCATTAATATTCCCATGAGCAAAATACCAAAAAGTCATACTAGCAACACTGCAGTGATACTGTGAACTGGGTTCCTGAAAACAGTTTTGGTATGATGACagttctctgtgttctgttaaaTTTTTTATACTTTGCTCTGTGTaccataagtgtgtgtgtgtgtgtgtgtgtgcatgtgcgtgtgtgtgtgcgtgcgtgcgagagagagagaaaatttcAAAGTGCAAGTGTGAGTGCCGTGAAGAGAGCAGGGCAACATGGTATGACTTTGGATAAGTGCATTCTCTCCTCACCTAAGAGAATACTGCAGTCTTTCTATATCTCATCTGTTACTGTATATTTAAATAATAGTTTgcattttagcagacactcttacccaGAGTGACTTAAAGTAAGTAGTGAGTGAGTGCCTACATTTTCATTATCAAAATATAATAACCACACATCATTGCATAAATGGACTATTAAATTATGAGGTTGCTAAATACAGTTGGCACTattggatatacagtgcattcggaaagtattcagacccttgactttttccacattttgttacgttacatccttattctaaaattgattgaattgttTTTTCCTCTCATCAACGTAACAcgtaataccccataatgacaaagaaaaaacgtTTTTTTCGAAATTTTGAAAACGTATTAAgaatattttttacaaatgtaaatatcacattaacataagtattcagccccttaactcagtactttgttgaagcatatttggcagtgattacagccttgagtcttcttgggtat
>XM_036957742.1
GTCCTCCAGTGGCAGTGGAGTATTGGTAGGATAAGGTGGGCATGCACATATccagtggtctgtgtgtgtgaatggctAGGGGACAAGACTGTGATGGTCAGATAGCGGCAATGCAATTGTCTTGGTCGTCAGCTGTACTACTCTACTTTACATAGTTCTCTTCTTTCAGATCCAGAATGCTGAAGCCAGGATGGATCCTACAGGTCATCTGAGACGGTCCGCGTGTTCTCCCTGTTCTCCGTCTGCGACGGCCCCCTCATCCCCGAGCCTCGTCCCTCGGGGCCCCATCTGGCTCTCCGTCTTCCGGCAGCAGCCCCCAGTTGCGGAGTAGCAGTGGAAAGGCGACCCTGTAAATATGTCTGGATGGAGGTCTCAATGGCGTCTCGTCCTGCTGAACTCCCTGACCTGCGGCCTGGAGATTTGCGTGGCAGCTGGGATCACGTACGTTCCCCCCCTGTTGCTGGAGGCTGGGGTAGAGGAACAGTACATGACTATGGTACTAGGTATCGGCCCAGTGTTAGGTCTCATCTTCATCCCTCTGATTGGCTCAGCCAGTGACCACTGCAACAGCAGCTACGGCCGCCGCCGGCCCTTCATCTGGCTGCTGTCCCTGGGAGTCCTCTTAGCCCTCCTCATCATCCCCCATGCCGACCTGCTGGCTGCCTACTTCACCTGGGGCGGATGCGCCCTGCAGGTAGCCTTCCTCATCCTCGGTGTGGGCCTGCTCGACTTCTGTGGCCAGGTGTGCTTCACTCCGCTGGAGGCGCTCCTGTCTGACCTGTACCGCAATGAGGAGGACTGCAACCAGGCCTTTGCCATGTTCTCCTTTATGGTCAGCCTGGGAGGCTGTGTGGGCTACCTGCTGCCTGCGCTGGACTGGAGCCGGGGCCTGCTGTCAGTCTACCTGGGTGGCCAGGCAGAGTGCCTCTTCTTCATGCTCATCCTCATCTTCGTGACCAGCGTGCTGATCACCATGAGGGTGTCGGAGGAGCCGCCGTGCACCGCGGCCCTGGAGCCTGGTCCTCTCTTGGAGGCAGGTCGCTGTGGTGTGCCGCGCTCCTGCTGCTACCTGCTCAAGTCGATTCCGCTACTGTGCCTGCTGAGGACGTGCTGGTCCATGACTCCGGCCATCTACCGCAGCTACTGCCACGTGCCCCGGGTGATGAGGCAGCTGTGCATGGCCCAGCTCTGCAGCTGGATGGCCGTCATGTCCTTCATGCTCTTTTACACAGATTTTATGGGGGAGGGGCTGTACGAAGGCATGCCCAGCGCCGCCCCCGGGACCGCCTCCAGGCAGCGCTACGAGGATGGCATCCGTATGGGCAGCCTGGGCCTGTTCTTTCAGTGTGCTACCTCAACCGTCTTCTCCCTGCTCATGAGCCGACTGGTTCGCCATTTTGGCTCGCGCCAGGTCTACCTGAGCAGCATGGTGAGCTTCACCATCtctgccctggtcatatgtatGTCCAAGAGTGTGGTCCTGGTCAGCCTGATGTCAGCTCTGACAGGCTTTGCCTATGCCACGCTGCAGACGCTGCCCTACACCCTCACATGTCACTACCACAAGGAAATGGAGGTTTACATGCCAAATAAGAAAACCAAAAACATGCTTAAGAACGGGATTGCGGTCAAGCGGGACTCGATCACTCATTTGACAGCCATGGACGAGGAGGGGGGCCTGACCCACAAACTGGGGGACACCAAAGGGCATGCCATCTTCAGCCAGGAAGACTCAGACTACTACCCCCCTCCCCACGGCCAGAATGGATCGTCCCTCAGCGCCACAGCCCCCGAGCAGGAGGAACCGGAGGGCTACGAGAAGCGCGGTGTAGGGTTGGACTTTGCCATCCTGGACAgcaccttcctcctctctcagGTCTTTCCCACTCTTTTCATGGGCATGATTGTTCAATTCACAAAGTCCGTCACTGCCTATATGGCCTCCTCCGCCATCTTCGGCATCATCGCCATTTATCTGGCCAACCAGATCATCTTTGACCAAAAGGACCTCAATAGCTGAAAGATTCAGTAACCAGGAGTGAAGGAATGCACGACTGCTTCCAGCATGCAACACTCCAGTGTCATCGCTGGCCGTTGCTATGGCTTTACCAACACATTGCAATGAGGCAGCCTGTCTGTacgtttgtatgtatgtgtgctgCAGAATTAAAAGAAAATGTAAACCCGTGACAATTGTTACCTCCAGAGATTACTGCAGGCAGTTACTATGGCTACAAGAGAGAGACTGGCTGGCATTAGCTGGTctgttgacactgtctgtgtACTTAAGAGCGTTTCTCACCTTGTTCCCCTCAGTCACATAGAAGACCGCTCAGATAGGTACCTTCACCTTCTCCTCAGGTACAACTAGCTACACAGCTTGATCAGACTCCATCAGACCTTAGACAACTGAAATTATGTATTACCATTTTACTCTCATCTATGTGTGAAGTGGTGGAGTTTGTCAATGCTATATCTTTAAAATAGTCTGCTATTAGTCGAAGTCAACAGGAGATTATTGGTCAGTTCTCATGCAGACTGGCCGAGGAAGATAGGAACAAGTTAATCTGGAGAGCCCATTACCTGCTTGGGAAAGAatttctgtctgtttgttgttATCAGCCAGGTTGAAATATTGGGAATGTTAAGTGTCACTGGCCCCTAGTGTTGGATGTTTTTTGGGAATTAACAGGTTTAtcatatatattttgtatatgaATACAGTACATATATGTATATCCCTATGGGAATGTATTATGCGACCTGTTTGGTAGAGGTCATCTATGAGGTAATCTGTGTAACTGCATTGTTGTTAGGATGAAGTGGTTCAAAGCTTTCATTGGaatttctttctccctcttttcaAGAAATATCAGACAGTGCCATTTAGTGCCATTCATTACATAATCTCTACTGCCATTATCATCCCATGTTCAACCTCATGACAATCTAGGAAAGTAAATGAGGTGAATTATCCAACACTTTAAAAATCCAGGTACACTTATTTTCGGAACTCCATTAATATTCCCATGAGCAAAATACCAAAAAGTCATACTAGCAACACTGCAGTGATACTGTGAACTGGGTTCCTGAAAACAGTTTTGGTATGATGACagttctctgtgttctgttaaaTTTTTTATACTTTGCTCTGTGTaccataagtgtgtgtgtgtgtgtgtgtgtgcatgtgcgtgtgtgtgtgcgtgcgtgcgagagagagagaaaatttcAAAGTGCAAGTGTGAGTGCCGTGAAGAGAGCAGGGCAACATGGTATGACTTTGGATAAGTGCATTCTCTCCTCACCTAAGAGAATACTGCAGTCTTTCTATATCTCATCTGTTACTGTATATTTAAATAATAGTTTgcattttagcagacactcttacccaGAGTGACTTAAAGTAAGTAGTGAGTGAGTGCCTACATTTTCATTATCAAAATATAATAACCACACATCATTGCATAAATGGACTATTAAATTATGAGGTTGCTAAATACAGTTGGCACTattggatatacagtgcattcggaaagtattcagacccttgactttttccacattttgttacgttacatccttattctaaaattgattgaattgttTTTTCCTCTCATCAACGTAACAcgtaataccccataatgacaaagaaaaaacgtTTTTTTCGAAATTTTGAAAACGTATTAAgaatattttttacaaatgtaaatatcacattaacataagtattcagccccttaactcagtactttgttgaagcatatttggcagtgattacagccttgagtcttcttgggtat

Function

NR:

description
solute carrier family 45 member 3-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15379 SLC45A3; solute carrier family 45, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957747.1 False 3782 mRNA 0.49 5 86042800 86111227
XM_036957742.1 True 3803 mRNA 0.49 5 86070515 86111227

Neighbor

gene id symbol gene type direction distance location
LOC110498298 LOC106561360 coding upstream 6029 86016887 ~ 86036771 (+)
LOC110498230 cecr1 coding upstream 127342 85908697 ~ 85915458 (+)
LOC110498211 LOC106561369 coding upstream 141906 85845868 ~ 85900894 (+)
LOC110498193 LOC106561370 coding upstream 206685 85831193 ~ 85836115 (+)
bida LOC106561376 coding upstream 277769 85755625 ~ 85765031 (+)
LOC110498346 LOC106573196 coding downstream 3398 86114625 ~ 86121138 (+)
LOC110498357 LOC106561358 coding downstream 13531 86124758 ~ 86131467 (+)
LOC110498407 LOC106561353 coding downstream 312483 86423710 ~ 86477838 (+)
LOC110498438 LOC106561350 coding downstream 370048 86481275 ~ 86520602 (+)
LOC110498585 LOC106561449 coding downstream 444248 86555475 ~ 86564249 (+)
G197043 NA non-coding upstream 73577 85968813 ~ 85969223 (+)
G197037 NA non-coding upstream 79203 85959802 ~ 85963597 (+)
G197036 NA non-coding upstream 81325 85958166 ~ 85961475 (+)
G197031 LOC106561367 non-coding upstream 91856 85950419 ~ 85950944 (+)
G196990 NA non-coding upstream 199541 85842017 ~ 85843259 (+)
G197072 NA non-coding downstream 1773 86113000 ~ 86113167 (+)
G197070 NA non-coding downstream 23874 86135101 ~ 86135427 (+)
G197065 NA non-coding downstream 30233 86141460 ~ 86146225 (+)
G197156 NA non-coding downstream 53982 86165209 ~ 86181488 (+)
LOC110498034 LOC106573178 other upstream 1022766 85010068 ~ 85054392 (+)
G195155 NA other upstream 1442476 84596410 ~ 84600324 (+)
G194395 NA other upstream 2483202 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 2917835 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 3388370 82652633 ~ 82654430 (+)
G197069 NA other downstream 24389 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 926284 87037511 ~ 87039236 (+)
G198575 NA other downstream 1038975 87150202 ~ 87150490 (+)
G198784 NA other downstream 1382396 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 1424709 87535936 ~ 87536928 (+)

Expression


Co-expression Network