LOC110498346 (LOC106573196)


Basic Information

Item Value
gene id LOC110498346
gene name LOC106573196
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86114625 ~ 86121138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957762.1
AACCAATGAGGTCTCTCCCTTCCTTGGTTTCACCGGCGCTGTGACAGTGTTCCGTTGAACTCTCCACAGACAAGGCACTGCAGTTCAGCGACTCTTTTCTTGCTTGCTCGCAActtcactctctccatcctcGGCCCTTGTATTGTTCGACTTGGCAGCGGTGAAGTCAGCATGACGTCATCTAGATATGCGATAGCCTGGCAAGGTGAAACAGAGTTTTGGTGAGTGGTTTTCTCCACGGCCTGCGttgcctacagagagagagaggcgcggAGCTGCAAAACATGGTAATCATCACCGCCACCACCTCAAGCTCTGCCGCGCACTCTCCTATTTCTACCCCTCTGCACCGGGGCTCTCGTTTCATACCCAGAGTTCAGACTTGCGTTCCAAAAATAATCCACTGCCAGCATGCCGAAGGAAGAAAAACAAGAAGAGTGGTATTTTTAGGGCCATTAATTTTGACCACGTGCCCCGAAGGTAAACCGGAAGGCCATTGCGCAAAGGCTCCTCATCAGTATGTCCTACGAGGCCAGCACGCACTGGACGTTGACTGCGATTGTTCTCTTGGGGTACCTAGTCGGGATTGTGTCATCATATCCTATTCCAAGCAGGACAAATGCAACTTTATTGGAGAAAAGATGGGAGACCCTCTTCTCCCGCTCCATTCTGGGCATCTCGGGGGAGAGATCGGACCTGAACTGGGAGAGTGACTATTTGCTAGGTATCAAAAGAGTGCGGAGGCTCTACTGCAACGTGGGCATCGGGTTTCACCTCCAGGTCCTCCCAGACGGCAGGATAAATGGTGTACATAATGAAAACCAGTACAGTCTATTAGAGATCTCAACGGTAGAGCGAGGAGTGGTTAGCTTGTATGGTGTGAAAAGTGAGCTGTTTGTCGCAATGAATGGCCGAGGAAGGTTATACGGAACGTCTTCCATGATGAGTGCAAGTTCAGAGAGAGCATGCTTCCAAACAACTACAACGCCTATGAGTCTTCCGTTTACAGAGGCTCCTACATTGCTCTCAGCAAGCATGGCCGTCTGAAGAGAGGCAAAAAGGCCAC
>XM_021574974.2
CCCTTCCTTGGTTTCACCGGCGCTGTGACAGTGTTCCGTTGAACTCTCCACAGACAAGGCACTGCAGTTCAGCGACTCTTTTCTTGCTTGCTCGCAActtcactctctccatcctcGGCCCTTGTATTGTTCGACTTGGCAGCGGTGAAGTCAGCATGACGTCATCTAGATATGCGATAGCCTGGCAAGGTGAAACAGAGTTTTGGTGAGTGGTTTTCTCCACGGCCTGCGttgcctacagagagagagaggcgcggAGCTGCAAAACATGGTAATCATCACCGCCACCACCTCAAGCTCTGCCGCGCACTCTCCTATTTCTACCCCTCTGCACCGGGGCTCTCGTTTCATACCCAGAGTTCAGACTTGCGTTCCAAAAATAATCCACTGCCAGCATGCCGAAGGAAGAAAAACAAGAAGAGTGGTATTTTTAGGGCCATTAATTTTGACCACGTGCCCCGAAGGTAAACCGGAAGGCCATTGCGCAAAGGCTCCTCATCAGTATGTCCTACGAGGCCAGCACGCACTGGACGTTGACTGCGATTGTTCTCTTGGGGTACCTAGTCGGGATTGTGTCATCATATCCTATTCCAAGCAGGACAAATGCAACTTTATTGGAGAAAAGATGGGAGACCCTCTTCTCCCGCTCCATTCTGGGCATCTCGGGGGAGAGATCGGACCTGAACTGGGAGAGTGACTATTTGCTAGGTATCAAAAGAGTGCGGAGGCTCTACTGCAACGTGGGCATCGGGTTTCACCTCCAGGTCCTCCCAGACGGCAGGATAAATGGTGTACATAATGAAAACCAGTACAGTCTATTAGAGATCTCAACGGTAGAGCGAGGAGTGGTTAGCTTGTATGGTGTGAAAAGTGAGCTGTTTGTCGCAATGAATGGCCGAGGAAGGTTATACGGAACGACAGTCTTCCATGATGAGTGCAAGTTCAGAGAGAGCATGCTTCCAAACAACTACAACGCCTATGAGTCTTCCGTTTACAGAGGCTCCTACATTGCTCTCAGCAAGCATGGCCGTCTGAAGAGAGGCAAAAAGGCCACCACTGCCATGACTGTGACACACTTCCTCCCCCGAATATGAGCAAAACTGGCAGGCAATAGCTCACTTATTTGCACATGTGGATTGTTGTCCAGGTAACATTATACTGTATACACCAATACAAATGGACTGAAAAAGAAAGAAATACCACTATATGATAGTATTTATTCAGTCTTTATATGTATATTTCGGTAGCTTACTTTGTATTAGAACTTACAGATATGCCATTAATTGCTGCTTATTATTTTATCAGTATTATATAAGGGGTGGAGAAGCTTCATCTGTCCCCTTCACTTTGAATGGGTGCTTGCCATACATAAATGGTGGAGACCTTGCCCTGTCAGTAGATGACAGCTCATCTCAGCATCTAGAAGTGAAATGGATACTTTTTTATTACCTCAAAGCGCCATTTCCTGAATGAAATAATGTGTGCATGATATTTCTACTGAGAAGAATGCCTGTTTACTTTGAACTTTTGTCATTATCCATCAAGAACTAAAAATGTTCCATCATC
>TU223069
TCGGGATTGTGTCATCATATCCTATTCCAAGCAGGACAAATGCAACTTTATTGGAGAAAAGATGGGAGACCCTCTTCTCCCGCTCCATTCTGGGCATCTCGGGGGAGAGATCGGACCTGAACTGGGAGAGTGACTATTTGCTAGGTATCAAAAGAGTGCGGAGGCTCTACTGCAACGTGGGCATCGGGTTTCACCTCCAGGTCCTCCCAGACGGCAGGATAAATGGTGTACATAATGAAAACCAGTCTATTAGAGATCTCAACGGTAGAGCGAGGAGTGGTTAGCTTGTATGGTGTGAAAAGTGAGCTGTTTGTCGCAATGAATGGCCGAGGAAGGTTATACGGAACGTCTTCCATGATGAGTGCAAGTTCAGAGAGAGCATGCTTCCAAACAACTACAACGCCTATGAGTCTTCCGTTTACAGAGGCTCCTACATTGCTCTCAGCAAGCATGGCCGTCTGAAGAGAGGCAAAAAGGCCACCACTGCCATGACTGTGACACACTTCCTCCCCCGAATATGAGCAAAACTGG

Function

NR:

description
PREDICTED: fibroblast growth factor 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957762.1 False 1066 mRNA 0.51 3 86114625 86120626
XM_021574974.2 False 1566 mRNA 0.46 3 86114641 86121138
TU223069 True 531 lncRNA 0.48 3 86115205 86120676

Neighbor

gene id symbol gene type direction distance location
LOC110498335 LOC106561359 coding upstream 3398 86042800 ~ 86111227 (+)
LOC110498298 LOC106561360 coding upstream 77854 86016887 ~ 86036771 (+)
LOC110498230 cecr1 coding upstream 199167 85908697 ~ 85915458 (+)
LOC110498211 LOC106561369 coding upstream 213731 85845868 ~ 85900894 (+)
LOC110498193 LOC106561370 coding upstream 278510 85831193 ~ 85836115 (+)
LOC110498357 LOC106561358 coding downstream 3620 86124758 ~ 86131467 (+)
LOC110498407 LOC106561353 coding downstream 302572 86423710 ~ 86477838 (+)
LOC110498438 LOC106561350 coding downstream 360137 86481275 ~ 86520602 (+)
LOC110498585 LOC106561449 coding downstream 434337 86555475 ~ 86564249 (+)
LOC110498595 LOC106561448 coding downstream 452431 86573569 ~ 86624542 (+)
G197072 NA non-coding upstream 1458 86113000 ~ 86113167 (+)
G197129 NA non-coding upstream 23804 86089942 ~ 86090821 (+)
G197116 NA non-coding upstream 41044 86072525 ~ 86073581 (+)
G197043 NA non-coding upstream 145402 85968813 ~ 85969223 (+)
G197037 NA non-coding upstream 151028 85959802 ~ 85963597 (+)
G197070 NA non-coding downstream 13963 86135101 ~ 86135427 (+)
G197065 NA non-coding downstream 20322 86141460 ~ 86146225 (+)
G197156 NA non-coding downstream 44071 86165209 ~ 86181488 (+)
G197066 NA non-coding downstream 46815 86167953 ~ 86173911 (+)
G197170 NA non-coding downstream 65258 86186396 ~ 86186734 (+)
LOC110498034 LOC106573178 other upstream 1094591 85010068 ~ 85054392 (+)
G195155 NA other upstream 1514301 84596410 ~ 84600324 (+)
G194395 NA other upstream 2555027 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 2989660 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 3460195 82652633 ~ 82654430 (+)
G197069 NA other downstream 14478 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 916373 87037511 ~ 87039236 (+)
G198575 NA other downstream 1029064 87150202 ~ 87150490 (+)
G198784 NA other downstream 1372485 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 1414798 87535936 ~ 87536928 (+)

Expression


Co-expression Network