setd6 (setd6)


Basic Information

Item Value
gene id setd6
gene name setd6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86520022 ~ 86526770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575228.2
GCGACATGACGTCAAAGATGCGACACACGTGGTTTGCGGAAATGAACACATACCAATAGCGTAAGCTTTCTGGAATCTACTTTGTATTAAATTATTCGTGAATTACACTAATATTTGAGTTGTACAACAGCACAATTTCTTGCACAGCATGGCAACCGATGCTAAAAGACTCAAGACAGAGGGCAGCGACCCTCTCCAGAGCTTCCTACAGTGGTGTGAAGGAGTGGGGCTGAAACTCAACAACAAGGTGTACATCAGCAATGAGGGCACAGTGGCAGAGTATGGCATGCTGGCTAAGGAGGACATAGATGAAGGAGAGTTGCTCTTTACTATACCCAGAATGGCTCTTCTGCACCAAGGCACCACCAAGGTCCTGGCTGTGCTGGAGGAGGGTAAAGCATCTTTGGAGAACACGTCTGGATGGGTGCCCCTCCTCCTGGCACTGATGTATGAGTACACATCTCCCCAGTCCCACTGGAGGCCTTACCTATCCCTCTGGTCTGACTTCACAGCTCTGGATCACCCCATGTTCTGGTCAAAGGATGAGCGGGACAGACTCCTGAAGGGGACAGGGATCCCAGAGGCGGTGGATACTGACCTCACCAACATCCAGAAAGAGTACAAAGACATCGTCCTACCTTTCATTACGTTACACCCTGACCTGTGGGACCCAGAGAGACATACACTGGACCTCTACAGAAGCCTGGTGGCTTTTGTCATGGCTTACAGTTTCCAGGAGCCCctggatgaggaggatgaggatgagaaGGACCCCAATCCTCCCATGATGGTGCCCATTGCGGACATGTTGAACCATGTGTCAAATCACAACGCCAATCTGGAATACACACCCGAGTGTTTGAAGATGGTGTCAGTGCGAAGTATCCGGAAAGGAGAGGAAGTGTTCAACACATATGGTCAGATGGCCAACTGGCAGCTCCTACACATGTATGGCTTTGCCGAGCCATATCAAAGTAATAGCAACGACACGGCAGACATACCCATGTCCAATGTATACAAAGCAGCTGTGCAAGTGACTCGGTCTGAAGCCGAACAGCGCCTCCTTGTGgagaagtggagtcttttgtgtGAGATGGAGATGGTTGGAGACAAGGGAGTGTTTATCTTTGGAAAGTCAGGGTCCCTCACTGACACAGAGATGTACACAACACTCAAGATCCTGTGCATGTCAGTAGAGGAGTTTGAGGACTTCAGAGAGAACGAAGGCTGGGAGGAGGCAGATGATGACGAGGAGAAAATGTTGCAGGCACTCTCCAACGAAGGCCTGCCTAGTCTGCCCCCTCTCTGGAGGCATCTGGTGCACGCTGCAGCCCGCTTCACACTGGCCTCTTATGGGGAGGATATGCTGAGAGACAAGGTGCTGCTGGAGGATAAAGATGGCTATGCAAAACTGAGCAGCCGGCAGAGGAGAGCACTCCAGGTCCGCTACGGACAGAAGACTATCCTGCATCAGCTTCTGGAGCTCACCAAACCATAAGTTCCCACAAAAAGCACGCCAATTTATGATCTCCACTCAAAACAAGCCTAAAGGGTTAGAGCCAGTGGCCAGCTTTAGGCCTATTTTAACTGTATATTCTTGTGAATTTGTATGTGACTGATGAGCAATGGCTTCTTTGAGACTGTTGGAAGTACTTCATGGGTCATAAGTTACCCAAACCGGCAATGGACCTTAGGTGGCCGCAGCTGTCGAGTGAACTGCTTGTTAAACATATCGTAATGTACACTATCATGTTTTGCATAATAAAACAGCAGTTTCCATTTGTTATCACTGAGGGAAACAAATGCAGTTGAATTGTTTAATGAGTTAACTACAGTATGCATACATACAGGAAATAAGTAGCAAGAACTAAAAGAATTACAAAATACACACGGACCAATACATTTACAAAACATTCAAAATCCTTACAAAATGGGCTGTATTGGTCCACAATTTGGATCTTTGTACAAATTAAGGTTCAATTAGTCATCTCAAATTTTCCAAGTGCCGGGGAGAACCTAACCCACTTTAAAATGGAAAGACCATTGACCCCCACCACACCCCAAGCAGATAAAGGAGTGAACCCAGGAGAACCTTTCTTCCCACTCAAATCAAATTAGGCTGCTTTTTATTAAATCCACTATCCATTAAGCCTCAACGCAAATAAATCAGTCAAGAAATATGTAAAACAATGTAGGAGGGAGACAAAACAGGGCTTTGGTAGtgagtgaatgtgtgtctgtACACGTCATCTTTACATGTTAGATAATTTGTTGGACACTCCTTTCAGACATGGAGCTCTCTCCCTTTTAATATTTACATCAAAATTATATTAAACAGCATTCAACTCCAGGCCATATCcaggc
>XM_021575232.2
TGCGACATGACGTCAAAGATGCGACACACGTGGTTTGCGGAAATGAACACATACCAATAGCACAGAGGGCAGCGACCCTCTCCAGAGCTTCCTACAGTGGTGTGAAGGAGTGGGGCTGAAACTCAACAACAAGGTGTACATCAGCAATGAGGGCACAGTGGCAGAGTATGGCATGCTGGCTAAGGAGGACATAGATGAAGGAGAGTTGCTCTTTACTATACCCAGAATGGCTCTTCTGCACCAAGGCACCACCAAGGTCCTGGCTGTGCTGGAGGAGGGTAAAGCATCTTTGGAGAACACGTCTGGATGGGTGCCCCTCCTCCTGGCACTGATGTATGAGTACACATCTCCCCAGTCCCACTGGAGGCCTTACCTATCCCTCTGGTCTGACTTCACAGCTCTGGATCACCCCATGTTCTGGTCAAAGGATGAGCGGGACAGACTCCTGAAGGGGACAGGGATCCCAGAGGCGGTGGATACTGACCTCACCAACATCCAGAAAGAGTACAAAGACATCGTCCTACCTTTCATTACGTTACACCCTGACCTGTGGGACCCAGAGAGACATACACTGGACCTCTACAGAAGCCTGGTGGCTTTTGTCATGGCTTACAGTTTCCAGGAGCCCctggatgaggaggatgaggatgagaaGGACCCCAATCCTCCCATGATGGTGCCCATTGCGGACATGTTGAACCATGTGTCAAATCACAACGCCAATCTGGAATACACACCCGAGTGTTTGAAGATGGTGTCAGTGCGAAGTATCCGGAAAGGAGAGGAAGTGTTCAACACATATGGTCAGATGGCCAACTGGCAGCTCCTACACATGTATGGCTTTGCCGAGCCATATCAAAGTAATAGCAACGACACGGCAGACATACCCATGTCCAATGTATACAAAGCAGCTGTGCAAGTGACTCGGTCTGAAGCCGAACAGCGCCTCCTTGTGgagaagtggagtcttttgtgtGAGATGGAGATGGTTGGAGACAAGGGAGTGTTTATCTTTGGAAAGTCAGGGTCCCTCACTGACACAGAGATGTACACAACACTCAAGATCCTGTGCATGTCAGTAGAGGAGTTTGAGGACTTCAGAGAGAACGAAGGCTGGGAGGAGGCAGATGATGACGAGGAGAAAATGTTGCAGGCACTCTCCAACGAAGGCCTGCCTAGTCTGCCCCCTCTCTGGAGGCATCTGGTGCACGCTGCAGCCCGCTTCACACTGGCCTCTTATGGGGAGGATATGCTGAGAGACAAGGTGCTGCTGGAGGATAAAGATGGCTATGCAAAACTGAGCAGCCGGCAGAGGAGAGCACTCCAGGTCCGCTACGGACAGAAGACTATCCTGCATCAGCTTCTGGAGCTCACCAAACCATAAGTTCCCACAAAAAGCACGCCAATTTATGATCTCCACTCAAAACAAGCCTAAAGGGTTAGAGCCAGTGGCCAGCTTTAGGCCTATTTTAACTGTATATTCTTGTGAATTTGTATGTGACTGATGAGCAATGGCTTCTTTGAGACTGTTGGAAGTACTTCATGGGTCATAAGTTACCCAAACCGGCAATGGACCTTAGGTGGCCGCAGCTGTCGAGTGAACTGCTTGTTAAACATATCGTAATGTACACTATCATGTTTTGCATAATAAAACAGCAGTTTCCATTTGTTATCACTGAGGGAAACAAATGCAGTTGAATTGTTTAATGAGTTAACTACAGTATGCATACATACAGGAAATAAGTAGCAAGAACTAAAAGAATTACAAAATACACACGGACCAATACATTTACAAAACATTCAAAATCCTTACAAAATGGGCTGTATTGGTCCACAATTTGGATCTTTGTACAAATTAAGGTTCAATTAGTCATCTCAAATTTTCCAAGTGCCGGGGAGAACCTAACCCACTTTAAAATGGAAAGACCATTGACCCCCACCACACCCCAAGCAGATAAAGGAGTGAACCCAGGAGAACCTTTCTTCCCACTCAAATCAAATTAGGCTGCTTTTTATTAAATCCACTATCCATTAAGCCTCAACGCAAATAAATCAGTCAAGAAATATGTAAAACAATGTAGGAGGGAGACAAAACAGGGCTTTGGTAGtgagtgaatgtgtgtctgtACACGTCATCTTTACATGTTAGATAATTTGTTGGACACTCCTTTCAGACATGGAGCTCTCTCCCTTTTAATATTTACATCAAAATTATATTAAACAGCATTCAACTCCAGGCCATATCcaggc

Function

symbol description
setd6 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity; peptidyl-lysine monomethylation; and regulation of inflammatory response. Predicted to act upstream of or within methylation. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; anterior neural keel; immature eye; midbrain; and pectoral fin musculature. Orthologous to human SETD6 (SET domain containing 6, protein lysine methyltransferase).

NR:

description
N-lysine methyltransferase SETD6 isoform X1

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0005634 nucleus cellular_component
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K05302 SETD6; N-lysine methyltransferase SETD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575228.2 False 2364 mRNA 0.46 9 86520022 86526769
XM_021575232.2 True 2250 mRNA 0.47 9 86520022 86526770

Neighbor

gene id symbol gene type direction distance location
ccnd2a LOC106561356 coding downstream 99438 86141721 ~ 86420584 (-)
LOC118936857 NA coding downstream 115867 86401369 ~ 86404155 (-)
tigara LOC106561357 coding downstream 380195 86134395 ~ 86139827 (-)
LOC110498321 LOC106561361 coding downstream 502458 86012158 ~ 86017564 (-)
dyrk4 LOC106561362 coding downstream 545858 85955508 ~ 85974164 (-)
LOC110498617 LOC106561447 coding upstream 131244 86658014 ~ 86676250 (-)
LOC118937297 LOC106561464 coding upstream 157317 86684087 ~ 86695202 (-)
LOC118942936 LOC106611498 coding upstream 172571 86699341 ~ 86701251 (-)
LOC110498636 LOC106561446 coding upstream 180706 86707476 ~ 86714996 (-)
zpd LOC106594968 coding upstream 188290 86715060 ~ 86719172 (-)
G197824 NA non-coding downstream 15053 86504492 ~ 86504969 (-)
G197808 NA non-coding downstream 36052 86483681 ~ 86483970 (-)
G197655 NA non-coding downstream 61054 86412664 ~ 86458968 (-)
G197660 NA non-coding downstream 159331 86357692 ~ 86360691 (-)
G197768 NA non-coding downstream 165038 86347892 ~ 86354984 (-)
G197835 NA non-coding upstream 3772 86530542 ~ 86530878 (-)
G197836 LOC100380853 non-coding upstream 7189 86533959 ~ 86534243 (-)
G197837 NA non-coding upstream 7591 86534361 ~ 86534589 (-)
G197844 NA non-coding upstream 24668 86551438 ~ 86551751 (-)
G197864 NA non-coding upstream 43931 86570701 ~ 86571080 (-)
G197554 NA other downstream 556357 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 676529 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 1880266 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2537855 83977965 ~ 83982167 (-)
G195427 NA other downstream 2615571 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 376266 86903036 ~ 86903956 (-)
G198912 NA other upstream 795369 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3080067 89606837 ~ 89609890 (-)
G202279 NA other upstream 3850787 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 5062442 91589212 ~ 91591049 (-)

Expression


Co-expression Network