LOC110498585 (LOC106561449)


Basic Information

Item Value
gene id LOC110498585
gene name LOC106561449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86555475 ~ 86564249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575240.2
CATCCCAGCATACCTCGTGTGTCTAACGGCTTCGGACCGTACACTCGTTGAAATATTTTGcaggcctgtttttttttttaaattatcagGTCAATAATCTGGACCGGACCATATTGTATTATCCTACAATTAGTACCATGCAAAGTATTTTATATAGATAAATCTCACTTTAGCACGGCGAATGTAAAGGGGTTTCTAGCTAGCAAGTGAGTTTGGGGccggctagctaacgttactgttgTACGGATTCGAACAAGAATTCCTAATCAGATGGAGCTGGAGTCGGAAAGAACCGAATTTGGAGCTATGGGTGACTCGCTTCAACCTCAAACCCCAAGTCGACACGAGAAGAGTCTAGGATTGCTTACAACCAAATTTGTATCTTTGCTACAAGAGGCCAAGGATGGAGTTCTAGACCTGAAAGCAGCAGCAGACACCCTAGCTGTAAGACAGAAGCGGCGCATCTACGACATCACCAATGTGCTTGAGGGCATCGGACTGATCGAGAAGAAGTCTAAGAACAGTATTCAGTGGAAGGGTGTTGGTCCTGGCTGTAACACACAGGAGATAGCCGATAAACTCATTGATCTGAAGGCAGAACTGGATGATCTGGACAAGCGGGAGCACGAGTTGGATCAACAGAGGGTCTGGGTCCAGCAGAGCATCATGAACGTCACAGACGACTCGCAGAACAGCCCTATGGCTTATGTAAAACACGAAGACCTCTGTAGTGCTTTCAAAGGTGACACTCTCCTAGCTATCCGCGCTCCCACAGGCACACAACTGGAGGTGCCCATACCTGAGTCGGTACTGATTGGACAGAAGAAGTATCAGATCCGTCTCAAGAGCTCAGCAGGACCCATTGAGGTTCTCCTTGTGAACAAGGACCCATCCAGCCCGTCTCCAGTGGTACTGTCCGTCCCCCCACCCGAGGACATGCTCCAGAGCCTTCCAGTGCCTGCTGCTGCCAACACAAAACCGACACCTACTGCCCCCTCACAGCCCAGCCAGCCTCTGGCCCACTCCTCCAACCCCAGTCCTGCCACACTCTTACCTGCCTGCACAGCTACTTCTAATCAGGCAGTCACCACTGCAGTGTCCAGCACACCGActacaaacacacccacacccactacAAACACAAATGCCCAATTGACTCCCCTGTTGGACACCCAGCCTCTCCAGTCCTCTGCCTCATTGGATGGCTGCTGTTCTTCTTCAGCAGTCTTTGAACCAATCAAGGCTGACCCCTCAGAATTGCTGTATTTCCCCAAAGAACTTTCAGACATGTTTGACCCGACTAAAGAGATCATGAGTGCAGACCTGTTGGAGGAGTTGATGTCTTCCGAGGtgttctctccactcctccgtcTATCTCCCCCTCCGGGTGACCACGACTACATATATAACCTGGACGAAACTGAAGGCCTGTGTGACCTCTTTGATGTTCCGATTCTTAACCTTTGACCTCTGAGCTGAGTTCCCAAAAAAAGTATTATGTAAGGAAATTTAAGAAtcatttttaccattttctatgGAAAAAAACAAATGTGTGATTCTATTTTTGGATCCTGGTGTATTATAAGATTTTTCTGTGTAAACAATTAAGTGTTTTTATGTCGTACCCAAATATTTCCACTAAACATTGGCAGCAAATGTTTGAGGGCGTAGTGGCTTTAGGTTAGATAAAAAGGGGTACAGTCCTCTCCAAtctgaacggatgatctctcgGGTGAAATGCCTCGCATTCATGCTGACCTGTGATTAACTCTATTCCCTCATTTATCTATGTTTGAAATATATATGTAACAAACTGGCAACGGCAGTCATCACACTCTGATCCTCATCAACTCGGTGTCAACAGATTCAAAGACACCTAGGCAGCTGCATACACTCGGACAGTACGCACGAATGTGTACAGATACACAGCTGATCAAAGTTATGCGCTTTTGTTCTGTATATAGAGAATATTTATATTTTGTATTAATAGCCTTTGTGGAGTTGTGTATAATGAACTACATGTGAAATACATTGAGACAGCAGTAGTGAACTAGGGTGCCAAACAAAGACAGAGAAAGTTGCAGTGTTTCAGATGTAGCTCGCATTGGATCAACTGCTACACGTTTATCATTCACTTTGGTCCCCTTGCGTTGTTTTGTCAGTAAGTTTAATTTCTTACTCATTTCATTCACTTTTCAACATTGTGTGTGGCTCTTGTTTTTTCTTGCAAATTATGTATATGAATATTATTTTATTCAGTCTGTttctaaaattattattattatttttttttacagatacaGTAATTCGTTCCTATGAAGTAGGGGTTAGTGCTTTGAGAACTGGTCTATAGTCTGTATATGTTGCTCAGAACTGTGTTCAATACAAAAAACGTTCCCCAACATGCTTTCACCATGACTATGGAAACACAAATGTTGACTTTGTTCTTTTTGTGAGagaatatttatttaaatgttccTTCTGTTTTCATTCTTGTTTTCATTCGTTCCCAGAATACATTGTTTCCCTTTTATTATAGACGAGCATTTTTTATACACCACTATAacaacactaccgttcaaaagtttggggtcacttagaaatgcccttgtttttgaaagaaaagcacattttctgtccattaaaataacaccaagttgatca

Function

NR:

description
transcription factor E2F4-like

GO: NA

KEGG:

id description
K04682 E2F4_5; transcription factor E2F4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575240.2 True 2664 mRNA 0.43 10 86555475 86564249

Neighbor

gene id symbol gene type direction distance location
LOC110498438 LOC106561350 coding upstream 34873 86481275 ~ 86520602 (+)
LOC110498407 LOC106561353 coding upstream 77637 86423710 ~ 86477838 (+)
LOC110498357 LOC106561358 coding upstream 424008 86124758 ~ 86131467 (+)
LOC110498346 LOC106573196 coding upstream 434337 86114625 ~ 86121138 (+)
LOC110498335 LOC106561359 coding upstream 444248 86042800 ~ 86111227 (+)
LOC110498595 LOC106561448 coding downstream 9320 86573569 ~ 86624542 (+)
trnag-gcc-2 NA coding downstream 155367 86719616 ~ 86719686 (+)
trnag-gcc-3 NA coding downstream 156120 86720369 ~ 86720439 (+)
trnag-gcc-4 NA coding downstream 158379 86722628 ~ 86722698 (+)
trnag-gcc-5 NA coding downstream 160638 86724887 ~ 86724957 (+)
G197314 NA non-coding upstream 4602 86550468 ~ 86550873 (+)
G197307 NA non-coding upstream 22986 86532289 ~ 86532489 (+)
G197305 NA non-coding upstream 24766 86530342 ~ 86530709 (+)
G197304 NA non-coding upstream 27686 86527514 ~ 86527789 (+)
G197303 NA non-coding upstream 28066 86527187 ~ 86527409 (+)
G197863 NA non-coding downstream 8385 86572634 ~ 86572844 (+)
G197894 NA non-coding downstream 64065 86628314 ~ 86633193 (+)
G197905 NA non-coding downstream 83938 86648187 ~ 86648510 (+)
G197910 NA non-coding downstream 90732 86654981 ~ 86655321 (+)
G197911 NA non-coding downstream 91969 86656218 ~ 86658572 (+)
G197069 NA other upstream 418867 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1535441 85010068 ~ 85054392 (+)
G195155 NA other upstream 1955151 84596410 ~ 84600324 (+)
G194395 NA other upstream 2995877 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3430510 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 473262 87037511 ~ 87039236 (+)
G198575 NA other downstream 585953 87150202 ~ 87150490 (+)
G198784 NA other downstream 929374 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 971687 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 1302628 87866877 ~ 87867967 (+)

Expression


Co-expression Network