LOC110498595 (LOC106561448)


Basic Information

Item Value
gene id LOC110498595
gene name LOC106561448
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86573569 ~ 86624542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575248.2
CTGTGGTACTCCATACCTTCTTTTCACTGTCTATGGTCGACACACAGTGCTTCCTACAGGGGGCGGGTGACTAAACTCAACCCGGAACTTTGCATGGTCAATAATTTTTGGAAACCTCTCCACCTAGGCACATAGGTTCTCCAAAATAGTTGAAAATATAATTCACTCTCGGATTATTGTCGTCCTCTCTAGGGAGAGATTTCAAATGCTTCCAGTCCCGATTTCGGCGCTTTCGCGAGGACAGTAATTTTTCTTTTCAAACAGAGTCTTAggaggacacacatacacacacttcaaGATGCCCCAACAGGATATTGTGAAGATTGCCATCCAGATGCCAGGGGCATACCCTCAGCTCATTCAACTGGACCAGAAAAAGCCCCTTTCTGCTGTAATAAAGGAGGTTTGTGATggGTGGAATCTTCCAGGCCCTGATAACTACGCCCTCCAGTATGCCGACGGTGTTCAGACCTACATCACTGAATCTAACCGTCTGGACATTAAGAATGGCTGCATTCTCCGTCTGACCAAGGCACCGGGCCGTTGTGCCGAGGACCTCTACAAGGGCATCCAGAGCTCAGACTCAGGTGTGCGCTGTGATTCGCTGAAGCAGCTGGCCTGCGTGTCCACTGACGTCACTTTTGCCCAGGAGTTTATCAGCCGTGATGGCCACTCTCTGCTGGTGAAGATCGTAGAGGACGCTGACGAGGCCCCTTTGATCATgacccacacactgacaggctTCATGGAGTTGATGGACCATGGGATTGTATCATGGGAGAATCTTTCTGCTGTCTTCATCAAGAAGATTGCTAACTTCGTCAATGCCAAGGTACTGGACGCATCCATCCAGCAGGTGTCCCTGGCCATCCTGGAGAGCATGGTgctgagcagcagcagcctcttCCAGCAGGTCAAGCAGGAGGTCACTCTGGAGAGACTCCTCTCACATCTGCAGGTGACAAACCAACAGATTCAAACCAAAGCCATGGCCCTCCTCATGGCTCTGCTACAGACTGCTggagatgcagacagacagGAGCTGTTTGCCTTCTTAGGAATGAAGAATCTTCGACAGTACATCTATAAGAACATTATCCATAGTTCTGCCTCCGTGGGGGATGAGATggcccactacctgtatgtcctccagtctgtcactctgaaccaccTGGAGCCTCGCATGAGGATGCCCCTGGACTCCTACAACCAGGACCAAAGGGAGATTCTACACGGCCTGCGGCAGGCAGCCTTCGAGACGGAGAGTGAGAACAGCTTGAGTCATGAGCGACGGCGCTCTCTCTGTGCCAAGGAGTTCAAGAAGCTGGGCTTCTCTAACAACAGTAACCCAGGTCAGGACCTGCTGCGGGCCCCTCCTGGCCTGCTGGCTCTGGACACCATGGCCTACTTCGCCTCCCGCTACCCCGATGCCTACAGCAGGtttGTTCTAGAAAACAGCAGTAGGGAGGATAAGCACGAGTGTCCATTTGCCCGCAGCAGCATCCAGCTGACTCTAATCTTGTGTGAGATCCTACGCATCGGAGAGCCCCcCTCAGAGACTGGTTCAAACTACCACCCCATCTTCTTCTCTCAGGACCGGCTGCTAGAGGAGCTTTTCTGCGTCTGCATCCAGCTGATCAACAAGACCTGGAAGGAGATGAGAGCCACGCAGGAGGACTttgacaagGTAATGCAGGTTGTGCGTGAGCAGATCACTAGGACGCTGTCCAGTAAGCCCACGTCTCTGGAGCTGTTTAAGAACAAGGTGAATGCTCTGAACTACAGTGAGATCCTCAAACTACGCCAGACAGAGCGGCTGCACCAAGAGGAGACCCTCGCCCCGCCTGTATTAGAGCTGAAGGAGCGTCTGAAACCTGAGCTGTTGGAGCTGATTCGCCAGCAGAGACTGAACCGCCTGTGTCAGGGAACACTCTTCCGCAAGATCAGCAGTCGACGAAGACAGGATAAGTTGTGGTACTGTCGTTTGTCACCCAATCACAAAGTCCTGCACTTTGGCGATGTGGAGGAGGACACAGAAACACCCCCCATCGAGAGTCTCCAGGAAAAGATTCCTGTTGCAGATATCAAAGCACTGCTGACAGGGAAAGACTGCCCTCACATGAAGGAGAATAAGGGCAAACAGACCAAGGAAGGGTTGGACCTGGCTTTCAGCATCACTTATGACGTGGAGGAGTACAGCCTCAACTTTATCGCCTCATCCAGAACAGACTTCTGCCTGTGGACAGATGGACTGAGCGTGCTCTTGGGGCGGGACATGAGTAGTGAATGCATGAGGAGTGAGCTGGATATCCTGCTTTCCATGGAGATCAAGCTCCGCCTCCTGGACCTGGAGAACGTGCCCATCCCAGACTGCGCCCCCCCGGTGCCCAAACCCCCCAGCAACTTTAACTTCTGCTACGACTTAAGCCAGGCTGAGCAGTAGGCCTGGAGAGAGGTCAAGGCATGGTAGAGAAGGAGACCTGGGTCTTGTTCAGGAGGATGTAACGTTACAGAATGTTTGGATAGAAATGCATGAAGTAGAACATACATGATCATCTGTCCTATGGAATAGGGGCGTATGTcagttctattcattctatttctatctgcaacgttcagAATGTTTCATGTCACTGAATGTACCCCAATAACGACCAAGCATGTGGACATAGCTAGATACACAGGAGGAACAGTGGCAACATGGAGGCCTAGATGGACATAAAGATGATCTAAAGCAGAGGCAAAGGTGTCTTCTTATATGGGCGGAGTAATGTAGAAGACGAGAGGCTGAAGATGATTCCTTAGGTACTATTAGAGTGGTCATCTTTTTGGGTGTGGTCTGGGAACACAAGTGTATTGTAACTGTAGAAATGAATAACAGAAAGGAAACGCTGCACACTGCtgctcccaggtgatatttatttaTAACAACGTTTCaacccttaggtcttcatcaggcatccatatcccaggtgGGGGTGGAAGGTCCTATATATAGGGGCAGTTCTCAGTGACATTACTTCCTGAAACgggaggtaaaaaatatataacataGGTTGACAATATTAAcattcaatgtatcaaaatatatgatcatacacaatgtgatcaatatttacagtaatatatatatatacaatacaatattaaATTAGGATAAAAAACAATCATTTGGACATTTTGAAACTATAAAAACGGTTTTCAAGAATTACCCACAAAATGACAAGTGGCTAATGAAGGGAGTTATGTTTTCTATAGTTGAATGCTTCATACTTTAGCATTACTTGTCTTCAGCGTTTCTCCCATTCTGACTTCGGGCGTCACCTCTCCATGGCTCCAGTCCTTCACAGTCCTCTGTGTATTGTGTTTGGGCAGAGTTCATGTTTCGTTTTGGTCATATCTGTGTTTAAGTTTTTCTAGTTTTTCAACTTTTTGGGGGTTTTCTATAAACTGATACCTTTGTGAAACAGGCAGCATGACAGCTCTTCTGAACGTACTGAACCAAAGGATTGAAACAGAACAAAACAATACAtaaatatttttgtatatatatatatatatatatatatatgcctctGAGACAGAATCACTTGTTTTGAcgtttacattttacatttcagtaatttagcagacgctcttatccagagcgacttacaggagcaattacagttaagtgccttgctcaagggcacatcgacccTTGAGCACCTAGTTGACATGGTACTTAACAACTTGACCTTCTACACCAACAGAATCCTGTCTAGCAGATTGTAACGGGCTTTATTAGTCTTTACAGGATAGGTACAGTTTGGCGTAGCACATAGCATTTTCCACCAACCTTAAAgggattctctggtacttttgtatactttttagacAGTTGTTCTGAAAGTAGCACCcatgagccaaaagtggtccccgaaTATTGCGTAATACATTGCATGTGCAGATATGTGTACCACGtcattgctctctttctctcactctgctgTGTATGATTCTTGCTAGTGGTCACTCAAGTGGCTAGGGGGTCAATCTCATTAGCTGGAACTGGAATTGCTAGGGGACTGGCCCACAAAGGGGAAATGGTGCAGATAGTATCGCCAAGTTAAGGTTGGTCGAAAATTCTCTGTGCTATGCCTAACAGTACTTTTTCTGTAATGGCTAATGGAGCATCACATTAGCCCGTTACAATCTTCTAGCTAGCAGAATCCTAACTCCCTGTTCTAAAGTGGTACTTTAATAATTTGAAGACAGAAACAAGAAAATAGAGGTAACCAAGATAATCAGGCTCCAAGCCTGGTAGAATCCCTATTTATAATATATGAAATATCctttatatgtacagtgccttcggaaagtatttagacccagtgactttttccacattttgttatgttacagacttattctaaaatgattttttttttttttattctcagcaatttacacacaata
>XM_021575254.2
TAAACCAGAGGAGTGACGGCAGGGAAGAGAGGCACCGGATGGGAGTGTTTGTGACTATGTGTTTACAAAATAACCTTAGCTCTGGACTATGATGCCATAAAGGTGCTACTCTCTCTTATTCCCCCCTcggctgtcctctcctccatttctctcctctcatatctccctttctctctctcttgaccCTGGAACTAACATTGTTGGCCTCTGGGTTGTACTTGAAGGACACACTATGGAGGTAATGCAGGTTGTGCGTGAGCAGATCACTAGGACGCTGTCCAGTAAGCCCACGTCTCTGGAGCTGTTTAAGAACAAGGTGAATGCTCTGAACTACAGTGAGATCCTCAAACTACGCCAGACAGAGCGGCTGCACCAAGAGGAGACCCTCGCCCCGCCTGTATTAGAGCTGAAGGAGCGTCTGAAACCTGAGCTGTTGGAGCTGATTCGCCAGCAGAGACTGAACCGCCTGTGTCAGGGAACACTCTTCCGCAAGATCAGCAGTCGACGAAGACAGGATAAGTTGTGGTACTGTCGTTTGTCACCCAATCACAAAGTCCTGCACTTTGGCGATGTGGAGGAGGACACAGAAACACCCCCCATCGAGAGTCTCCAGGAAAAGATTCCTGTTGCAGATATCAAAGCACTGCTGACAGGGAAAGACTGCCCTCACATGAAGGAGAATAAGGGCAAACAGACCAAGGAAGGGTTGGACCTGGCTTTCAGCATCACTTATGACGTGGAGGAGTACAGCCTCAACTTTATCGCCTCATCCAGAACAGACTTCTGCCTGTGGACAGATGGACTGAGCGTGCTCTTGGGGCGGGACATGAGTAGTGAATGCATGAGGAGTGAGCTGGATATCCTGCTTTCCATGGAGATCAAGCTCCGCCTCCTGGACCTGGAGAACGTGCCCATCCCAGACTGCGCCCCCCCGGTGCCCAAACCCCCCAGCAACTTTAACTTCTGCTACGACTTAAGCCAGGCTGAGCAGTAGGCCTGGAGAGAGGTCAAGGCATGGTAGAGAAGGAGACCTGGGTCTTGTTCAGGAGGATGTAACGTTACAGAATGTTTGGATAGAAATGCATGAAGTAGAACATACATGATCATCTGTCCTATGGAATAGGGGCGTATGTcagttctattcattctatttctatctgcaacgttcagAATGTTTCATGTCACTGAATGTACCCCAATAACGACCAAGCATGTGGACATAGCTAGATACACAGGAGGAACAGTGGCAACATGGAGGCCTAGATGGACATAAAGATGATCTAAAGCAGAGGCAAAGGTGTCTTCTTATATGGGCGGAGTAATGTAGAAGACGAGAGGCTGAAGATGATTCCTTAGGTACTATTAGAGTGGTCATCTTTTTGGGTGTGGTCTGGGAACACAAGTGTATTGTAACTGTAGAAATGAATAACAGAAAGGAAACGCTGCACACTGCtgctcccaggtgatatttatttaTAACAACGTTTCaacccttaggtcttcatcaggcatccatatcccaggtgGGGGTGGAAGGTCCTATATATAGGGGCAGTTCTCAGTGACATTACTTCCTGAAACgggaggtaaaaaatatataacataGGTTGACAATATTAAcattcaatgtatcaaaatatatgatcatacacaatgtgatcaatatttacagtaatatatatatatacaatacaatattaaATTAGGATAAAAAACAATCATTTGGACATTTTGAAACTATAAAAACGGTTTTCAAGAATTACCCACAAAATGACAAGTGGCTAATGAAGGGAGTTATGTTTTCTATAGTTGAATGCTTCATACTTTAGCATTACTTGTCTTCAGCGTTTCTCCCATTCTGACTTCGGGCGTCACCTCTCCATGGCTCCAGTCCTTCACAGTCCTCTGTGTATTGTGTTTGGGCAGAGTTCATGTTTCGTTTTGGTCATATCTGTGTTTAAGTTTTTCTAGTTTTTCAACTTTTTGGGGGTTTTCTATAAACTGATACCTTTGTGAAACAGGCAGCATGACAGCTCTTCTGAACGTACTGAACCAAAGGATTGAAACAGAACAAAACAATACAtaaatatttttgtatatatatatatatatatatatatatgcctctGAGACAGAATCACTTGTTTTGAcgtttacattttacatttcagtaatttagcagacgctcttatccagagcgacttacaggagcaattacagttaagtgccttgctcaagggcacatcgacccTTGAGCACCTAGTTGACATGGTACTTAACAACTTGACCTTCTACACCAACAGAATCCTGTCTAGCAGATTGTAACGGGCTTTATTAGTCTTTACAGGATAGGTACAGTTTGGCGTAGCACATAGCATTTTCCACCAACCTTAAAgggattctctggtacttttgtatactttttagacAGTTGTTCTGAAAGTAGCACCcatgagccaaaagtggtccccgaaTATTGCGTAATACATTGCATGTGCAGATATGTGTACCACGtcattgctctctttctctcactctgctgTGTATGATTCTTGCTAGTGGTCACTCAAGTGGCTAGGGGGTCAATCTCATTAGCTGGAACTGGAATTGCTAGGGGACTGGCCCACAAAGGGGAAATGGTGCAGATAGTATCGCCAAGTTAAGGTTGGTCGAAAATTCTCTGTGCTATGCCTAACAGTACTTTTTCTGTAATGGCTAATGGAGCATCACATTAGCCCGTTACAATCTTCTAGCTAGCAGAATCCTAACTCCCTGTTCTAAAGTGGTACTTTAATAATTTGAAGACAGAAACAAGAAAATAGAGGTAACCAAGATAATCAGGCTCCAAGCCTGGTAGAATCCCTATTTATAATATATGAAATATCctttatatgtacagtgccttcggaaagtatttagacccagtgactttttccacattttgttatgttacagacttattctaaaatgattttttttttttttattctcagcaatttacacacaata

Function

NR:

description
PREDICTED: engulfment and cell motility protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575248.2 False 4458 mRNA 0.46 21 86573569 86624542
XM_021575254.2 True 3009 mRNA 0.43 7 86611029 86624542

Neighbor

gene id symbol gene type direction distance location
LOC110498585 LOC106561449 coding upstream 9320 86555475 ~ 86564249 (+)
LOC110498438 LOC106561350 coding upstream 52967 86481275 ~ 86520602 (+)
LOC110498407 LOC106561353 coding upstream 95731 86423710 ~ 86477838 (+)
LOC110498357 LOC106561358 coding upstream 442102 86124758 ~ 86131467 (+)
LOC110498346 LOC106573196 coding upstream 452431 86114625 ~ 86121138 (+)
trnag-gcc-2 NA coding downstream 95074 86719616 ~ 86719686 (+)
trnag-gcc-3 NA coding downstream 95827 86720369 ~ 86720439 (+)
trnag-gcc-4 NA coding downstream 98086 86722628 ~ 86722698 (+)
trnag-gcc-5 NA coding downstream 100345 86724887 ~ 86724957 (+)
trnag-gcc-6 NA coding downstream 101098 86725640 ~ 86725710 (+)
G197863 NA non-coding upstream 725 86572634 ~ 86572844 (+)
G197314 NA non-coding upstream 22696 86550468 ~ 86550873 (+)
G197307 NA non-coding upstream 41080 86532289 ~ 86532489 (+)
G197305 NA non-coding upstream 42860 86530342 ~ 86530709 (+)
G197304 NA non-coding upstream 45780 86527514 ~ 86527789 (+)
G197894 NA non-coding downstream 3772 86628314 ~ 86633193 (+)
G197905 NA non-coding downstream 23645 86648187 ~ 86648510 (+)
G197910 NA non-coding downstream 30439 86654981 ~ 86655321 (+)
G197911 NA non-coding downstream 31676 86656218 ~ 86658572 (+)
G197912 LOC106561447 non-coding downstream 34153 86658695 ~ 86659315 (+)
G197069 NA other upstream 436961 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1553535 85010068 ~ 85054392 (+)
G195155 NA other upstream 1973245 84596410 ~ 84600324 (+)
G194395 NA other upstream 3013971 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3448604 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 412969 87037511 ~ 87039236 (+)
G198575 NA other downstream 525660 87150202 ~ 87150490 (+)
G198784 NA other downstream 869081 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 911394 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 1242335 87866877 ~ 87867967 (+)

Expression


Co-expression Network