LOC110498636 (LOC106561446)


Basic Information

Item Value
gene id LOC110498636
gene name LOC106561446
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86707476 ~ 86714996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934371.1
CCCTGTAGTTCAATGTGGCTGTGGGTTACAAACAAGTTCAAACATGAGTTACTGGTTTAAATCATAACTGGTCTCATCAAAAACCAACTCCTATTATAGTGTCACTCGATTTGATCAAATGGTGTAGTGATTCTTAGCTATCAGCAGATGGCAATAGGAGCCAACTGAGGGGTCAGTCTATAATTCATCCCCAGGGGGAGGGGAGTTTATTTTCAAGAGAAATTGCTTTGTCTAATAGACTTCCCACAGTATCTAGGCTACATTAACTTTCCTCCCGATTTTCTCTAGCAGAGTCACTGTTCTGTTTGTATTCTCAGACGGCAGTGAGTTTATTGGACTATCAATGTAATCCAGGATGGCATGCGGCGGTTTAACTAAAATCTAACAGACCTTCTGGATACTTGGAAGTAACTTGTAAGACAATTGTATTTTGTTTGAGGGTATCCTCCACAATTACGTTCTGAGTATAGTACGGCTACATCTTACCAAGAACAAAACATGACGCTTGACACCTTTTCTCTCTACTCTTCCCTCGTCGTGCAGGAAAGCTATTGACTGAAGGGGAAGTAGGTAACACACTAACGTGTCAGAAATGCTGTTCTTACCTTTAGCTCGTGTGGGCCATTAGGAACTGGGCATAAATGGACAACTGACTCAGGCTTTAAATAACCCATGATCACATATTTGGGGATAATTTCTACCAGTTCTAACCCGAGCTGTTTCGCAAACGATCCGATTTCAGCGCGCCACGACCCAATGCCCAGTGGTTGAACTGCAGAGAGAACTTGAACACAAACTGGATTTTGAACTCAACCAAAGAGTTTGACTATGCAGTCACATAGCAGATCACTCATCACTTGACGGCAATTTTCAATCACATCTGAATGACAGTCCATTGCACGGGCGAACGAGGCTGCATAAAAATGGCATCTCTGGAGAAGCGCTTCTCCGGGGCTGTGGAAACAAATAATGGCCTCAATCGTCTTGCTCTTGTGCAACAGGCTTGTTACCAATGCGGACGAAGGCCATTTCAACGCAGAGTGGTGGTTGCGGAGGTTTGGCTACCTGTCTCAAGCCAGCAGACAGATGTCAACCATGCAGTCCTCTCAAATTCTGCCCAATGCCGTCAGTGACATGCAGCGCTTCTATGGCCTAGAGCTCACTGGAGAGATGGACCCTGCCACACTGAAGGCCATGAGAAGGCCTCGCTGTGGAGTCCCAGACAAATCTGTTGAGCAGGCTGAGAATGGTGTGAGGCGGAAACGCTACGCTCTCACTGGCCAGAAGTGGGACAAGAACCTTCTGACTTACAGCATTATGAACACCACCCCAAAGGTTGGTGAGGTTTGGACACTGGAGGCCATCCGCAGAGCTTTCGAGGTGTGGGAGCGCGTGACTCCACTGAGCTTTGAAGATGTTGCTTTCCAAGACATCACTAACAGCAGCCAGGACACGCTAGATATCATGCTGTTGTTTGCATCTGGTTTCCATGGAGACATGTCTCTGTTTGAGGGCGAGTGGGGGTCTCCAGCTCATGCCTACTACCCAGGGTCTGGGATGGGCGGAGACACGCACTTTGACGCTGATGGACCCTTGACAACCACGATCCATCAGTTTCGCACCGGTGACAGCGACTACCGGAAACCTGTCTCCAGGTGGGGCAAGGTCCCATCCTCTCCTAAAGGAGCCTTCCTCAGCGATGATGGCGCTTACACATACTTCTACAAGGGCTCCAAGTACTGGAGGTTTGATAACCAGAAGATGAAGGATGACCCAGACTACCCCATATCCAGCGTGGACCCAGATACAGATGACACAGTTACAGGCCGCAAGTGGCCAACAGTGGACCAGCCAAAACCACAACCATCAGTTGGCTCAGTCCCGGATgaggtggacagagagaccaATTAGGATTACACCAACGATGTGGATTATGAACCTGATGCGAAGGACAAAGGGGTGGATGTGGTGGTGAGGATGGCTGAGAACGAGGCCAAGGTTATCACCCTGATCATAGTGACCGTGCCCCTGGTCCTGGTGCTGTTCATCCTCTATATCTATGCTATTATCAACACCCTGCAGAAGAAAGAGGCGCCCAGACTTTTGGTCCACTGCAAACGATCCCTGCAGGAGTGGGTTTGATCTGCTCCAGAAATGGattcacacacacgcaaacacatacacacaccatacatagGCACATTCCATTTGAACACATATGTACACACAAGCATTACATAACAATACAAGCACACAGTTTCCCTATCTTTCCTCCATGGTGCTTTACCCGATCTTGATTTAAGCCTGTTTATAACAAACAATATGCACTTTTAACGTCCTGTGTTTAGATTTTTGTTAGTTGCGGTTGTAGTTTAAAGCGTGTTTAGCTACAGATTTCCGTGAATGTCCTTATAAAACAGAGTGGTGGTGCGTGAATGTCTAACAGTTGTGTGTTCTGTAAACACAAGACCACCGTCTCCCACTGTGTCTTTCCTCTAGTCTACCCACTCGACCACAACAGCCCAGACTTTATCCACAAAGGGGAAACATTTGATAGACTCCCTCGGGCGAGATTAAATGCAGGGGTTATTATCATATACATCGTGCACATATTTAGGAAGGGTTAAAGCCTGCTAGAACAGAGCTGGGTCTGGGTTACATTTCCCAGGGAGGGGTTAGGAGGCATGCCAGCATTTCCTTTGCCCAAGTTAGAGTTCTCTTTTCTTAGGAGGGAGGCAAGGGGAGACGAGGAGGGAAGGAGGTGGGAcgaaggggtgggagggaggtggCACGAAGGGAAGGGTCGGAGCTCCATTGGCATTGTGCTTCATGAACTAGATTAACGAGTCACACTCCTATTTTTTCATACTTTTTTCCAAAGCGGTTTGGCTGTAGATATCTTCCTGTGGGACTCCCCCTCTCCCATGCTGTCATGTTTCACTGTAGACATACTCCATCTGCAGTCTCTCTTTATCTGGGAGTCTGCTCTCCACTGTCTGCCTAGGAGAGGCTTTAATGCTAATCTGTGATGATATGTCACATGGGTTTGTGATGAGAACAGTTTGTATTCATTTTGAACTTAACCATAAGTGATGTCCTACAAATCTTCTTGTCATTTAAAGAAATGGAAATGCCCCTCTTTGCACCCTCTCCCTTTGTTACCAACTCTTTGTGTGCCAACTTCTCTCATTCAGAGGCCAAATACTTTTTATATAACACCCAGAGTGCAATTGTTGTATTGTGCAATTGACAGATGAAGACCAATAGTTAAAGGTTTCTCCTCAGCAAAGACACTATCACATGTAAAAAACAATGGTCGAATATACTTCAGGTTTGTGGTCAATTTTGTATCAACAGTGTTCTGTCATTTATTGTTTGTGTTTTGTATTGGTTGGCTGTTGGAGAGGAAGGAATACTTAAAATTGTAGTTGtacaaaaatgtttttattcCAGTTTTTAACATTTGTACATTTGTAATGTGCTCTCTGTCCGTTAGCAGAGTTCAATGATGCATGCAGGACATGCTCTGTAAAGCTTTTacacaaatatataaatattttgcaATAAAACATGAATTAAGGCAAA
>TU224174
AGGGAAGGGTCGGAGCTCCATTGGCATTGTGCTTCATGAACTAGATTAACGAGTCACACTCCTATTTTTTCATACTTTTTTCCAAAGCGGTTTGGCTGTAGATATCTTCCTGTGGGACTCCCCCTCTCCCATGCTGTCATGTTTCACTGTAGACATACTCCATCTGCAGTCTCTCTTTATCTGGGAGTCTGCTCTCCACTGTCTGCCTAGGAGAGGCTTTAATGCTAATCTGTGATGATATGTCACATGGGTTTGTGATGAGAACAGTTTGTATTCATTTTGAACTTAACCATAAGTGATGTCCTACAAATCTTCTTGTCATTTAAAGAAATGGAAATGCCCCTCTTTGCACCCTCTCCCTTTGTTACCAACTCTTTGTGTGCCAACTTCTCTCATTCAGAGGCCAAATACTTTTTATATAACACCCAGAGTGCAATTGTTGTATTGTGCAATTGACAGATGAAGACCAATAGTTAAAGGTTTCTCCTCAGCAAAGACACTATCACATGTAAAAAACAATGGTCGAATATACTTCAGGTTTGTGGTCAATTTTGTATCAACAGTGTTCTGTCATTTATTGTTTGTGTTTTGTATTGGTTGGCTGTTGGAGAGGAAGGAATACTTAAAATTGTAGTTGtacaaaaatgtttttattcCAGTTTTTAACATTTGTACATTTGTAATGTGCTCTCTGTCCGTTAGCAGAGTTCAATGATGCATGCAGGACATGCTCTGTAAAGCTTTTacacaaatatataaatattttgcaATAAAACATGAAT
>TU224173
TCATGAACTAGATTAACGAGTCACACTCCTATTTTTTCATACTTTTTTCCAAAGCGGTTTGGCTGTAGATATCTTCCTGTGGGACTCCCCCTCTCCCATGCTGTCATGTTTCACTGTAGACATACTCCATCTGCAGTCTCTCTTTATCTGGGAGTCTGCTCTCCACTGTCTGCCTAGGAGAGGCTTTAATGCTAATCTGTGATGATATGTCACATGGGTTTGTGATGAGAACAGTTTGTATTCATTTTGAACTTAACCATAAGTGATGTCCTACAAATCTTCTTGTCATTTAAAGAAATGGAAATGCCCCTCTTTGCACCCTCTCCCTTTGTTACCAACTCTTTGTGTGCCAACTTCTCTCATTCAGAGGCCAAATACTTTTTATATAACACCCAGAGTGCAATTGTTGTATTGTGCAATTGACAGATGAAGACCAATAGTTAAAGGTTTCTCCTCAGCAAAGACACTATCACATGTAAAAAACAATGGTCGAATATACTTCAGGTTTGTGGTCAATTTTGTATCAACAGTGTTCTGTCATTTATTGTTTGTGTTTTGTATTGGTTGGCTGTTGGAGAGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934371.1 False 3585 mRNA 0.46 8 86707476 86714996
TU224174 False 782 lncRNA 0.38 1 86707485 86708266
TU224173 True 583 lncRNA 0.39 1 86707651 86708233

Neighbor

gene id symbol gene type direction distance location
LOC118942936 LOC106611498 coding downstream 6225 86699341 ~ 86701251 (-)
LOC118937297 LOC106561464 coding downstream 12274 86684087 ~ 86695202 (-)
LOC110498617 LOC106561447 coding downstream 31226 86658014 ~ 86676250 (-)
setd6 setd6 coding downstream 180706 86520022 ~ 86526770 (-)
ccnd2a LOC106561356 coding downstream 286892 86141721 ~ 86420584 (-)
zpd LOC106594968 coding upstream 64 86715060 ~ 86719172 (-)
LOC110533876 NA coding upstream 28936 86743932 ~ 86747314 (-)
LOC118942938 LOC106561453 coding upstream 170167 86885163 ~ 86887339 (-)
LOC110498693 LOC106561455 coding upstream 223299 86938295 ~ 86967505 (-)
rassf10a LOC106561459 coding upstream 322298 87037294 ~ 87039516 (-)
G198007 NA non-coding downstream 52936 86648809 ~ 86654540 (-)
G198005 NA non-coding downstream 59488 86647681 ~ 86647988 (-)
G197974 NA non-coding downstream 96212 86607931 ~ 86611264 (-)
G197864 NA non-coding downstream 136396 86570701 ~ 86571080 (-)
G197844 NA non-coding downstream 155725 86551438 ~ 86551751 (-)
G198032 NA non-coding upstream 4715 86719711 ~ 86720152 (-)
G198034 NA non-coding upstream 13507 86728503 ~ 86732160 (-)
G198074 NA non-coding upstream 45713 86760709 ~ 86760932 (-)
G198224 NA non-coding upstream 147912 86862908 ~ 86863261 (-)
G198230 NA non-coding upstream 155428 86870424 ~ 86870635 (-)
G197554 NA other downstream 743811 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 863983 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2067720 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2725309 83977965 ~ 83982167 (-)
G195427 NA other downstream 2803025 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 188040 86903036 ~ 86903956 (-)
G198912 NA other upstream 607143 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 2891841 89606837 ~ 89609890 (-)
G202279 NA other upstream 3662561 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4874216 91589212 ~ 91591049 (-)

Expression


Co-expression Network