LOC110533876


Basic Information

Item Value
gene id LOC110533876
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86743932 ~ 86747314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475056.2
CAAATTGTTGCACCTGAGTAAGTTCCACCTTGCTGGTTTTGATTACCACCAGGTTAAGCTGCTTGAGAATTTGACAAATATACTTTACATGACACCAACCAAATGTTTCTGTCAGCACAATAATCTGTGGTGTTAAACACACATTTTTGGAAACAGATAACGAAACACCAGCATAGCATGTGTGCTGCAGCTCATTCATGATGGCTGTGTCTGTCTACCTTTTAAGGCTGCAGTTATGGCTATGCTGTGTGTACAGCGTCTCACTGTGGAGCCCCAGTACTACAGAGCTGCACATTATCCCAGCCAGCATGACCAGGTCCACAGTTCCTCAGCCTGGAGTAGCACTTTTCCTGCTGACCTCCGGTCAAAAAGTGCTCCAGTAGATTTCCGCTTAACTATACCCTTCCAACGCCTCTCAAGTCCACCGACAACCTCTACCAGTAGTCCTGGCTCTAATCAGAAAGGCGGCACCCCTTGTGCTGGTCCTGCTCAGGGGGGCCCAGACCCAAACCAAGATTAGTCTGCCCCCAATGGCTCTGACACCCAGAGAGAAGTTTCCCATAGCCCCATTGGAAAGATCCAAGGTGTAAAGTTGTTTTTTATCCCAGATAAGATGGAGCTAACGGATTTGACCAAACCTCAAACTGGAAAGACCAGCTGTGCCATTTACCCTATTCCCTTAGCCATTGGTCCCCCCCCCAGTATGAGACAAATCGCAGTGGCTATTACTCGCATACCACATCTTTCCCCATGTATTATTCAAACCCAACTTCTTCAGTTTACCCTGTTCCAATGTGGTATGGTCCCACTCAGGATGTTGAGGTTCCCAATGGTTATAACCCAGGTCAGGTAAAGCCTCCCACTAACTTTGGCAAAGGACCATTTCTCCCAAACCAATCACTGCAGCTGGTCCTGCACCAGTTGGCTCAAGTACCCCCTCAGCCTGGAAATGTTCCTAGTGGACATTACCAAGGTCTGAAGAACCCCACTACTACCCAATTTGGGACACCCTAGACTGGAGGAGGACAGGCTGATAAGAAATCCTCTCCTGTCCAGACAGGAAATAAACCTGATTCCTCCAGAATGGAAAGCTCTCAAAACCTGCACTCCAGCAATATAACCCCAGCTGTGACCCTCCTTATAGTGTAGGTCAGTATAAATATAAACCCCCAACTCCAATCAAACCTGACCCTGTGCCCACCAATGTTGGCTATGGCCAAAATGGAGGAGCTCTTAGTGGTTACTACTACCCGGGTCAGGAAAACCTCTCCCCAGGTTATTTTGGCAAAAGACTGACTGAACAAACTATGCCTCCAAAACCTACTGTTGACCCTGTACCCAATACCTCTGATCCTATCCACTATGGAAACTATTTTCTAGTTCAAACTAAACCTTCCATCTCAAATTCAGGAATAAGCCAGGCTGGTAAGAAACCTTCAGTCCAGAAAGGTAGTGAACTTGGTCCACCAAGCCCCCAAATAAGACCTGTCCCCCCCAGAATTATACCCAAGATATGGCTCTCCTTACAGTGTGGATAGCCACAAGTAGGAACTCTCAGCCACCTTTTCACAGCACTTGGACCACAAACCTGCTTTGGAAGTCAACATGTTTGCACCTTTTCACAGTGGATTAAACCCGAATGCAGCCAACCAGTTCGCCCAGATTACCAGTGATTCAAGCATGGAGGCTGAGAGTGGTGAAGAGCCTAGTCCTGTCCAACCCACTCCTGAATCAGATGAAGGTGCAGGTCCCAGAGGATTTATGCCACAAATACTTCCTCAGAGAAACTACGCCCATTCCTAGAGTGGAGGCTCCCGTGGTGATGTCGTTCCAGGAAGACCTGAATTCAGGATGACTTAAGTGCAGGCTCGGTGATCTCCTGACCATGGACTTCAATTCTCTACAGCACTTTGATTACTAATAAATAATTCAATATTTCA
>XR_002475057.2
GCTTATGTAAACATAGCCTGTGTAGTTTGTAGAACCATACAAAACATTACTTTTTTGTGTGTCTCGTCAAAAATTCAGAACTGTAATTGCATCCTAATATTTTCTACTCTGGAAACATCTGAACATACTGCTCCAGAGACTTATCTGCCCTAGTTTCCTCCACCAATCATTGAAGGATTATCTCAAATTGTTGCACCTGAATAACGAAACACCAGCATAGCATGTGTGCTGCAGCTCATTCATGATGGCTGTGTCTGTCTACCTTTTAAGGCTGCAGTTATGGCTATGCTGTGTGTACAGCGTCTCACTGTGGAGCCCCAGTACTACAGAGCTGCACATTATCCCAGCCAGCATGACCAGGTCCACAGTTCCTCAGCCTGGAGTAGCACTTTTCCTGCTGACCTCCGGTCAAAAAGTGCTCCAGTAGATTTCCGCTTAACTATACCCTTCCAACGCCTCTCAAGTCCACCGACAACCTCTACCAGTAGTCCTGGCTCTAATCAGAAAGGCGGCACCCCTTGTGCTGGTCCTGCTCAGGGGGGCCCAGACCCAAACCAAGATTAGTCTGCCCCCAATGGCTCTGACACCCAGAGAGAAGTTTCCCATAGCCCCATTGGAAAGATCCAAGGTGTAAAGTTGTTTTTTATCCCAGATAAGATGGAGCTAACGGATTTGACCAAACCTCAAACTGGAAAGACCAGCTGTGCCATTTACCCTATTCCCTTAGCCATTGGTCCCCCCCCCAGTATGAGACAAATCGCAGTGGCTATTACTCGCATACCACATCTTTCCCCATGTATTATTCAAACCCAACTTCTTCAGTTTACCCTGTTCCAATGTGGTATGGTCCCACTCAGGATGTTGAGGTTCCCAATGGTTATAACCCAGGTCAGGTAAAGCCTCCCACTAACTTTGGCAAAGGACCATTTCTCCCAAACCAATCACTGCAGCTGGTCCTGCACCAGTTGGCTCAAGTACCCCCTCAGCCTGGAAATGTTCCTAGTGGACATTACCAAGGTCTGAAGAACCCCACTACTACCCAATTTGGGACACCCTAGACTGGAGGAGGACAGGCTGATAAGAAATCCTCTCCTGTCCAGACAGGAAATAAACCTGATTCCTCCAGAATGGAAAGCTCTCAAAACCTGCACTCCAGCAATATAACCCCAGCTGTGACCCTCCTTATAGTGTAGGTCAGTATAAATATAAACCCCCAACTCCAATCAAACCTGACCCTGTGCCCACCAATGTTGGCTATGGCCAAAATGGAGGAGCTCTTAGTGGTTACTACTACCCGGGTCAGGAAAACCTCTCCCCAGGTTATTTTGGCAAAAGACTGACTGAACAAACTATGCCTCCAAAACCTACTGTTGACCCTGTACCCAATACCTCTGATCCTATCCACTATGGAAACTATTTTCTAGTTCAAACTAAACCTTCCATCTCAAATTCAGGAATAAGCCAGGCTGGTAAGAAACCTTCAGTCCAGAAAGGTAGTGAACTTGGTCCACCAAGCCCCCAAATAAGACCTGTCCCCCCCAGAATTATACCCAAGATATGGCTCTCCTTACAGTGTGGATAGCCACAAGTAGGAACTCTCAGCCACCTTTTCACAGCACTTGGACCACAAACCTGCTTTGGAAGTCAACATGTTTGCACCTTTTCACAGTGGATTAAACCCGAATGCAGCCAACCAGTTCGCCCAGATTACCAGTGATTCAAGCATGGAGGCTGAGAGTGGTGAAGAGCCTAGTCCTGTCCAACCCACTCCTGAATCAGATGAAGGTGCAGGTCCCAGAGGATTTATGCCACAAATACTTCCTCAGAGAAACTACGCCCATTCCTAGAGTGGAGGCTCCCGTGGTGATGTCGTTCCAGGAAGACCTGAATTCAGGATGACTTAAGTGCAGGCTCGGTGATCTCCTGACCATGGACTTCAATTCTCTACAGCACTTTGATTACTAATAAATAATTCAATATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475056.2 False 1940 mRNA 0.47 3 86743932 86747131
XR_002475057.2 True 1984 mRNA 0.47 4 86743932 86747314

Neighbor

gene id symbol gene type direction distance location
zpd LOC106594968 coding downstream 24760 86715060 ~ 86719172 (-)
LOC110498636 LOC106561446 coding downstream 28936 86707476 ~ 86714996 (-)
LOC118942936 LOC106611498 coding downstream 42681 86699341 ~ 86701251 (-)
LOC118937297 LOC106561464 coding downstream 48730 86684087 ~ 86695202 (-)
LOC110498617 LOC106561447 coding downstream 67682 86658014 ~ 86676250 (-)
LOC118942938 LOC106561453 coding upstream 137849 86885163 ~ 86887339 (-)
LOC110498693 LOC106561455 coding upstream 190981 86938295 ~ 86967505 (-)
rassf10a LOC106561459 coding upstream 289980 87037294 ~ 87039516 (-)
LOC110498779 LOC106561460 coding upstream 296575 87043889 ~ 87138769 (-)
LOC110498811 NA coding upstream 397409 87144723 ~ 87150107 (-)
G198034 NA non-coding downstream 11772 86728503 ~ 86732160 (-)
G198032 NA non-coding downstream 23780 86719711 ~ 86720152 (-)
G198007 NA non-coding downstream 89392 86648809 ~ 86654540 (-)
G198005 NA non-coding downstream 95944 86647681 ~ 86647988 (-)
G198074 NA non-coding upstream 13395 86760709 ~ 86760932 (-)
G198224 NA non-coding upstream 115594 86862908 ~ 86863261 (-)
G198230 NA non-coding upstream 123110 86870424 ~ 86870635 (-)
G198231 NA non-coding upstream 123932 86871246 ~ 86873200 (-)
G198334 LOC106561456 non-coding upstream 188089 86935403 ~ 86937181 (-)
G197554 NA other downstream 780267 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 900439 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2104176 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2761765 83977965 ~ 83982167 (-)
G195427 NA other downstream 2839481 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 155722 86903036 ~ 86903956 (-)
G198912 NA other upstream 574825 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 2859523 89606837 ~ 89609890 (-)
G202279 NA other upstream 3630243 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4841898 91589212 ~ 91591049 (-)

Expression


Co-expression Network