LOC110498682 (LOC106561452)


Basic Information

Item Value
gene id LOC110498682
gene name LOC106561452
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86787804 ~ 86873265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575326.2
CACGCGCCAATTGGATTGTGTAATGATCGGATATGCAGTGTACATTTCCAGAGGATTTCATTGGCCGCCTGCGCTGTGCCTCAGATTAATTTGTAGCAGCGGCTTTCAGGTGGTGCCCAGTATATGCAGTACTGAACATTGCATCTACTAATTTACGTTTCTGTGTTAGCGTTGCTGTCAGTCTCCGCAGCTGGAAGGCTTTAGCCCTTTGCTGCAATGTTATAATCCTGCACTGAAGCTACCGTTTTGTCATTGAGTTTTGTAAGCATTTTCTATTGTGGTTGTATGCGCACTGGACCGTATGGAGGGATGTCGCGATGATGGTCTGCTCTAGGAGAACCAAAACTTTGGTGTCGACATGCGTTATTTTGAGTGGCATGACCAATATTGTCTGTCTTCTCTACGTCGGCTGGATCACTAATTATGTGGCCAATGTGAACACCAAAGTCCCAGAGCCCGAACTGGAGAGGAAGTTTGAAGATGACAACAAGGGGGAAACTCTGAAGATTATAGAGCGACTGGACCGACTGGAAAATGTGGTCAACCAACATATCCAAGAGGTGCCCCAAAAGGATAAGGACAGTGAAGAAAAAGCAGGGGAGTCCCTCTCAGACTCCTCCCTGTTCGTCCGCTGGGGTCATGACCTTGGTCCTGAGAGTCGCCGGGTGGCGCTGAAGAAGTTCCAGTACTACGGCTACAATGGCTATCTCAGTGACCGCCTCTCTCTGACCAGACCCATCCCAGACCTCAGGCCTGATGGGTGCAGAAACATGTCGTACCCCTCCAATCTCCCCCAAGTCAGTATCATCTTTATCTTTGTGAACGAGGCCCTGTCGGTCATCCTGCGCTCCATCCACACAGCCATGAACAGaactccctcccacctcctcaagGAGATCATCCTGGTTGATGACAACAGCAACAATGCTGAGCTGAAGGAGAACCTTCAACACTTTGTGAAGGAGGCCAACTCCCAGCGGCCAGACTTCATCAAACTGGTCCGTCACGACAAGCAGGAGGGACTGATCCGCTCCCGGGTCAGTGGGTGGAGGGCCGCCAGCGCACCCGTCGTGGCCCTGTTCGATGCCCACGTGGAGTTCAACATTGGATGGGCCGAGCCCATCCTGCTCAGGATCAAGGAAGACAGAACGCGCATCATCTCACCGTCATTTGACAACATCAAGTATGACACGTTTGAGATCGAGGAGTATCCACTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGTCGCTACCTGAATCCGCCCAAAACCTGGTGGACCCAGCACAACACCACCGCCCCTATCAGGAGCCCAGCTCTAATTGGCTGTTTTGTGGTGGACAGGAAGTACTTTGAGAAGATTGGTCTATTGGATGAGGGAATGGAGGTCTATGGTGGAGAGAATGTGGAGCTTGGCATCAGGGTATGGCAAtgtgggggcagtgtggaggttTTGCCCTGTTCTCGGATAGCGCATATCGAGCGTGCTCACAAGCCCTACACTCAAGACCTGACTGCTCATGTGCGGCGGAATGCACTTAGGGTGGCCGAGGTGTGGATGGACGAATACAAGAACCATGTTTACATGGCCTGGAACGTTCCCCTACAGAACTCAGGGATTGACATAGGGGACCTCTCGGAGAGGAAGGCTTTGAGAAACAGACTGCTGTGTAAATCTTTCAGCTGGTTCTTGGCCAACATCTACTCTGAGATGAGAACCTACAGTGACACAGTTGCCTATGGAGTGTTGAAGAATGCTCTGAGGAGCGACCTGTGTCTAGACCAGGGGCCTGACTCGGACAACATCCCCATCCTGTACGTCTGTCATGGGATGACGCCACAGAACGTGTACTACACGAACACGCAGCAGCTACACCTGGGGGTCCTGAGCCCCACCATCGACGACGACGACAACAAGTGCCTGGTGGATGTGAACAGTCGGCCGCGGCTCCTGGAGTGCAGCTACGCCACAGCCAAGCGCATGAAACTCGCCTGGCAGTTTACTCAGGGAGGTTCCATAGAAAACAGGAAGTCCAAGCATTGCCTGGAGCTTGTCGAGAGCAGTGAAATGGAGTTTGGCTACCAGCTGGCCATACAGAAGTGTTCTGGTCAGAAATGGACAATCACCAACCTACTGTCAACCTACACTCGCCAATGAGGGGATCCTGAGTCCTGCAGGGGAAAGAGTTGCCCATGGTGAACACTGGACCTGTGACTGACAGACATAGAAGCTTTGcttcttaaaaatatatatatttattgagGAAGGCAAGAATTGAATTATAAGTATGCAATCTCTTAGACTCAGACATAATTTGATCAATATTAAACAATTCCTGGATTCATAGTGTATGTGGGATTTAAGTGTCAGATTGTCTTTTGTTATGCTGAATTTAGGCTGGCATTGGCTCTAATATACATTATGTAATTTCTGCTACTGTGTAGCATGTGTTTGAAAAACCTTTCTTATTCTGGTTTCTTTTGTGTCTCAGGTTTGTTTGTAGACAGATTTTATTATAAGATCAAGTGGTCGGGTTCGAGGAACTGTCGCGAATATACACACTTTTTTTTAATAAGTGTATATGCTGGATATTTATAAAAACCTTCAGTAAAAATgctgatgagaaaaaaatatattctgtGGCTGATTTTCCATTCTGAGTAATTCCTTATGAAAGTCAATCAAGGTGGTCCATCTCAGTTTTGTTTTTGTGAAGACACCTTAATAGTCTATTTGATACAATAATTATTTTTCACAATGCAAAAAAATTGAGGCTTTTGCAAAGAATGCAATCATTATTTTCCCCATATCCTGAGAAATACAGGACTTGTTGACAGCAGCATCTGGGTAATAATGGAGCATGAGTGAAACGTCCAGTAATAATATCCTCTGTATGATGAAACAAATGTCCTTATGTTATCACTGTTATTACCAATATAAGGACACTAATTTCATTTACTTAATGTCCTGTATATTTCAAGTGGGAAATTAATGCTTTCATGTTGGTTTTCATATGTTGCTAATTAAAAGTAATTTGTAGAACTAACTCCTGTTTCACTACACTGCTTGCGTGTCCTACAGAGATATATATTCTTAAATTATGACTTGGTTCCTGAAGAGGAGTGCAGGAGAGATGTTTTCATCGATTTAACATGTCAGTCCTCATTAGCTTCTAGAAATTGAGTTAAAAGTCATGAAAGATGCACGTGATGGCACTCAAAACGCATCACTCTGTTCATGTTCCTGCTTGTATGTCACAGGCAATTTACACTAATTGTTGAAGCAGTGGAGGAAGCACAGCATCCACATACACCACCGGAATTTCTGATAACAAATGTGCTTCTATGGGACAGCACAGCCCTTTACACTCATACGTGTAtacaggttgaaaatggcagatttaggAACTGATAAACACCTTAATTAGAACACACTGGCTGACAAGTAGCATGCTATACATGAAGTCTGAACTCTGGCTCTGCGCTTCACAgcactgtatgggttttgactgacagctgttCTGAACTTGAGCTAATGGGGAACTTTTGCACGTTTTTTGTTTGAGTGTGGGAAATGGTGTAAAATAAGAGGACTTTATGTATTTTGAAAAATCCCTAGGAACAATAacattacattgaaccaacgttgaattgacgtctgccCAGTGGGATGAGACATTGAGGATTAGAATAAATATAATATTTCCATAgcataaaactcatgtcatatactGTGTTTATGATCAGTatatttgatgtacagttacaagatgacaagGCGTCACCATgcgttgttctgaacagaatgagtcttgTCTATTGTAAGGAAAATTTGCCGTGGCACACGCACCTGaatgtttcaagttttaatgtcatatgcaccagtacagtgaaatgcactCATGATACCTTTCTATGCGCACCAAAATTATGATCCGTTTTGCTGAATTgcattgtgaaagcctaacactgtaatattgtattttataacttagctagtcatgtttgCAATAAAACAATCTTTCAAATGA
>TU224247
CCTTCAGTAAAAATgctgatgagaaaaaaatatattctgtGGCTGATTTTCCATTCTGAGTAATTCCTTATGAAAGTCAATCAAGGTGGTCCATCTCAGTTTTGTTTTTGTGAAGACACCTTAATAGTCTATTTGATACAATAATTATTTTTCACAATGCAAAAAAATTGAGGCTTTTGCAAAGAATGCAATCATTATTTTCCCCATATCCTGAGAAATACAGGACTTGTTGACAGCAGCATCTGGGTAATAATGGAGCATGAGTGAAACGTCCAGTAATAATATCCTCTGTATGATGAAACAAATGTCCTTATGTTATCACTGTTATTACCAATATAAGGACACTAATTTCATTTACTTAATGTCCTGTATATTTCAAGTGGGAAATTAATGCTTTCATGTTGGTTTTCATATGTTGCTAATTAAAAGTAATTTGTAGAACTAACTCCTGTTTCACTACACTGCTTGCGTGTCCTACAGAGATATATATTCTTAAATTATGACTTGGTTCCTGAAGAGGAGTGCAGGAGAGATGTTTTCATCGATTTAACATGTCAGTCCTCATTAGCTTCTAGAAATTGAGTTAAAAGTCATGAAAGATGCACGTGATGGCACTCAAAACGCATCACTCTGTTCATGTTCCTGCTTGTATGTCACAGGCAATTTACACTAATTGTTGAAGCAGTGGAGGAAGCACAGCATCCACATACACCACCGGAATTTCTGATAACAAATGTGCTTCTATGGGACAGCACAGCCCTTTACACTCATACGTGTAtacaggttgaaaatggcagatttaggAACTGATAAACACCTTAATTAGAACACACTGGCTGACAAGTAGCATGCTATACATGAAGTCTGAACTCTGGCTCTGCGCTTCACAgcactgtatgggttttgactgacagctgttCTGAACTTGAGCTAATGGGGAACTTTTGCACGTTTTTTGTTTGAGTGTGGGAAATGGTGTAAAATAAGAGGACTTTATGTATTTTGAAAAATCCCTAGGAACAATAacattacattgaaccaacgttgaattgacgtctgccCAGTGGGATGAGACATTGAGGATTAGAATAAATATAATATTTCCATAgcataaaactcatgtcatatactGTGTTTATGATCAGTatatttgatgtacagttacaagatgacaagGCGTCACCATgcgttgttctgaacagaatgagtcttgTCTATTGTAAGGAAAATTTGCCGTGGCACACGCACCTGaatgtttcaagttttaatgtcatatgcaccagtacagtgaaatgcactCATGATACCTTTCTATGCGCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575326.2 False 4032 mRNA 0.45 11 86787804 86873265
TU224247 True 1322 lncRNA 0.36 1 86871837 86873158

Neighbor

gene id symbol gene type direction distance location
trnag-gcc-9 NA coding upstream 59849 86727885 ~ 86727955 (+)
trnag-gcc-8 NA coding upstream 60588 86727146 ~ 86727216 (+)
trnag-gcc-7 NA coding upstream 61341 86726393 ~ 86726463 (+)
trnag-gcc-6 NA coding upstream 62094 86725640 ~ 86725710 (+)
trnag-gcc-5 NA coding upstream 62847 86724887 ~ 86724957 (+)
zgc:162634 NA coding downstream 10936 86884172 ~ 86898082 (+)
LOC118942939 NA coding downstream 14014 86887279 ~ 86888026 (+)
LOC110498720 LOC106561456 coding downstream 37205 86910470 ~ 86937217 (+)
si:ch211-266k8.4 LOC106561457 coding downstream 100062 86973327 ~ 87027553 (+)
dkk3b LOC106561478 coding downstream 394669 87267934 ~ 87276184 (+)
G198086 NA non-coding upstream 14997 86772524 ~ 86772807 (+)
G198071 NA non-coding upstream 28193 86759385 ~ 86759611 (+)
G198070 LOC106581475 non-coding upstream 28721 86758853 ~ 86759083 (+)
G198056 NA non-coding upstream 37142 86750226 ~ 86750662 (+)
G197901 NA non-coding upstream 79549 86707519 ~ 86708255 (+)
G198234 NA non-coding downstream 2438 86875703 ~ 86875991 (+)
G198254 NA non-coding downstream 27605 86900870 ~ 86901071 (+)
G198257 NA non-coding downstream 32686 86905951 ~ 86906474 (+)
G198258 NA non-coding downstream 33218 86906483 ~ 86906780 (+)
G197069 NA other upstream 651196 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1767770 85010068 ~ 85054392 (+)
G195155 NA other upstream 2187480 84596410 ~ 84600324 (+)
G194395 NA other upstream 3228206 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3662839 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 164246 87037511 ~ 87039236 (+)
G198575 NA other downstream 276937 87150202 ~ 87150490 (+)
G198784 NA other downstream 620358 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 662671 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 993612 87866877 ~ 87867967 (+)
G198153 NA non-coding upstream 4481 86867069 ~ 86867356 (+)
G198152 NA non-coding upstream 4953 86866678 ~ 86866884 (+)
G198145 NA non-coding upstream 12183 86859453 ~ 86859654 (+)
G198130 NA non-coding upstream 34563 86836990 ~ 86837274 (+)

Expression


Co-expression Network