LOC118942938 (LOC106561453)


Basic Information

Item Value
gene id LOC118942938
gene name LOC106561453
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86885163 ~ 86887339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958037.1
CATCTGACATAATTCCAGACTATTTGGTGTATGCTAACTTTTTTTGTTGCGGTTGGTAGGCTAACGACCAAGGCCTGTAGTTAGCTCAATTTAATGTCGTTGTCATTTATGTTTCTTACTTTGTATTGGAAGACCACAGCCTGCAATCGCCGATATTTTCAAAATGTTGCCTGGTCAGGCTACTGTAACAAGTTCCATCATTAACATGTCGAGATGATGTGCAATGTATCAAGGTATGAGGCTCTTCTATGTGTTTAATGCAGGTGTTGGGTTACATGGTTTCAAGAGAGGATACAAGTAACGTTAACAGTTCCCCAACATTGGAGGAACAGAAGGCGTCTTGAATAACTGATGGAGATGGCTGAAAGAGCAGAGACAGAGTACACAGAATCTGACACATTTTGTGATTCACCCAGGAGAGGAAAAACCAAAAAATCAAAGAAAGACAAATGTCTAAAAAAGAACAAAACACACAGGACAGAGTTGAAAGACACTGGTATTGAAGAGAAAAAGAAAACCAAAAAGGCCAAAGGTAAcaggaagaagaaaaagaagggaAAAGTAGCCCTGGGATTACAAGATAGCTATTTTATTTTTGAGGGAAACAGTGCACCAAACTCTCCAATAAAGCCAATTAAGTCTAGGGGGAAGTCCACTGTAAAATTTGCTGTAAAACATTACATTAAGAAACAGGAACCTTTGCCGGTGGTTAGTGACTTAGTGAAGGTACCCAAGAAGAAGGCCCAGAGAAAAAAGAAAGTTGCATTTGATTTATTCCCTGATTACATACAAGCAAAACAGCCAGAAGTAGTCAAGTGTTGCACCTCAACAACCAAAGATACTTTTCCCTGGGAAAGCCCCAAGAGTGACAATGAAAGCAACTTTTCTGGGACTTATCAGTGTAGAGAGGGGCAAGAACAGGGAACAGAGTATGGAAAGGGACAAACCAACTCGCAAAGTACTGCTGAAGATGCCAACAGTGAGGACCTGTTCATAACTCAGAAGAAATTCAGAGTACTAACATCTTCAGATCACTCCAGCAGTGGAGGCACTGGTGAAGCCAACACCACAAAATTGGCCAGGCATACCAAGTCACTCATAGAGCCAAAAGAGGAGCCACTGCTCTGGAAGTCAACATCTGAGACAGCCACTCAAACAGAGAACTTCTTTACCTCAGAGATCTCCACATTCCTCAGGTTTCACCAGTCGTGTGGAGCTACCGAGTGCTCAGAGCAACCTACTGACCTGTCTCTCCCTAACAGGACGAGGGCAGAGATGGGCATACATCCCCCATCTCAAAGAAAAGCCAATGAAGAGGAAACAAGCCCCCCACTTGGCCAAAAGTCAGACACAACGTCAAGTGAGGAGAATGACCCATTCTGGCGGTGCAAGAGTCAAGTTAAGGcagttcagatgagactgaatgaaTCTTTCTTCTTTAAGATGAAGGGCGAGGGACAGTCCCCAAGACCACAATCTCCCTTGATGAAACTTACACAGGCCTGTGGTAGGAAGAAAACAAAAAAGTAACAAGTGAAGTTTAAACCCAAACTTCCCCTCAAGAACTAAAAAAAAGTCAAAAACAATACAATTTTATTAGTGATAGTCATTCAAAAGGATACATTTGCTTTGTGGCGTTCTTTGTCCCAGGTTTCCAAAATAGGTTCATTTTATAGTTTTATATGTTTAAGTTTAATTAAAAACACATTCAATAAAAACATGTATTAATGCACATTTTATGGAAGAAATTGCATGTCACTCATCAAATAAAGTTTCTTAATTTGTCA
>XM_036958026.1
AAAAAGATGCGCTCTCTCTGAAGTTGAAGAGGTGGGTGGCGGGAGTCTGTCAAGTGTCAGGGCCGGAGAATGACTTGAGAAGGTGTTGGGTTACATGGTTTCAAGAGAGGATACAAGTAACGTTAACAGTTCCCCAACATTGGAGGAACAGAAGGCGTCTTGAATAACTGATGGAGATGGCTGAAAGAGCAGAGACAGAGTACACAGAATCTGACACATTTTGTGATTCACCCAGGAGAGGAAAAACCAAAAAATCAAAGAAAGACAAATGTCTAAAAAAGAACAAAACACACAGGACAGAGTTGAAAGACACTGGTATTGAAGAGAAAAAGAAAACCAAAAAGGCCAAAGGTAAcaggaagaagaaaaagaagggaAAAGTAGCCCTGGGATTACAAGATAGCTATTTTATTTTTGAGGGAAACAGTGCACCAAACTCTCCAATAAAGCCAATTAAGTCTAGGGGGAAGTCCACTGTAAAATTTGCTGTAAAACATTACATTAAGAAACAGGAACCTTTGCCGGTGGTTAGTGACTTAGTGAAGGTACCCAAGAAGAAGGCCCAGAGAAAAAAGAAAGTTGCATTTGATTTATTCCCTGATTACATACAAGCAAAACAGCCAGAAGTAGTCAAGTGTTGCACCTCAACAACCAAAGATACTTTTCCCTGGGAAAGCCCCAAGAGTGACAATGAAAGCAACTTTTCTGGGACTTATCAGTGTAGAGAGGGGCAAGAACAGGGAACAGAGTATGGAAAGGGACAAACCAACTCGCAAAGTACTGCTGAAGATGCCAACAGTGAGGACCTGTTCATAACTCAGAAGAAATTCAGAGTACTAACATCTTCAGATCACTCCAGCAGTGGAGGCACTGGTGAAGCCAACACCACAAAATTGGCCAGGCATACCAAGTCACTCATAGAGCCAAAAGAGGAGCCACTGCTCTGGAAGTCAACATCTGAGACAGCCACTCAAACAGAGAACTTCTTTACCTCAGAGATCTCCACATTCCTCAGGTTTCACCAGTCGTGTGGAGCTACCGAGTGCTCAGAGCAACCTACTGACCTGTCTCTCCCTAACAGGACGAGGGCAGAGATGGGCATACATCCCCCATCTCAAAGAAAAGCCAATGAAGAGGAAACAAGCCCCCCACTTGGCCAAAAGTCAGACACAACGTCAAGTGAGGAGAATGACCCATTCTGGCGGTGCAAGAGTCAAGTTAAGGcagttcagatgagactgaatgaaTCTTTCTTCTTTAAGATGAAGGGCGAGGGACAGTCCCCAAGACCACAATCTCCCTTGATGAAACTTACACAGGCCTGTGGTAGGAAGAAAACAAAAAAGTAACAAGTGAAGTTTAAACCCAAACTTCCCCTCAAGAACTAAAAAAAAGTCAAAAACAATACAATTTTATTAGTGATAGTCATTCAAAAGGATACATTTGCTTTGTGGCGTTCTTTGTCCCAGGTTTCCAAAATAGGTTCATTTTATAGTTTTATATGTTTAAGTTTAATTAAAAACACATTCAATAAAAACATGTATTAATGCACATTTTATGGAAGAAATTGCATGTCACTCATCAAATAAAGTTTCTTAATTTGTCA

Function

NR:

description
uncharacterized protein LOC109867754

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958037.1 False 1787 mRNA 0.41 2 86885163 86887171
XM_036958026.1 True 1606 mRNA 0.42 3 86885163 86887339

Neighbor

gene id symbol gene type direction distance location
LOC110533876 NA coding downstream 137849 86743932 ~ 86747314 (-)
zpd LOC106594968 coding downstream 165991 86715060 ~ 86719172 (-)
LOC110498636 LOC106561446 coding downstream 170167 86707476 ~ 86714996 (-)
LOC118942936 LOC106611498 coding downstream 183912 86699341 ~ 86701251 (-)
LOC118937297 LOC106561464 coding downstream 189961 86684087 ~ 86695202 (-)
LOC110498693 LOC106561455 coding upstream 50956 86938295 ~ 86967505 (-)
rassf10a LOC106561459 coding upstream 149955 87037294 ~ 87039516 (-)
LOC110498779 LOC106561460 coding upstream 156550 87043889 ~ 87138769 (-)
LOC110498811 NA coding upstream 257384 87144723 ~ 87150107 (-)
mical2b LOC106573205 coding upstream 282771 87170110 ~ 87259603 (-)
G198231 NA non-coding downstream 11963 86871246 ~ 86873200 (-)
G198230 NA non-coding downstream 14528 86870424 ~ 86870635 (-)
G198224 NA non-coding downstream 21902 86862908 ~ 86863261 (-)
G198074 NA non-coding downstream 124231 86760709 ~ 86760932 (-)
G198034 NA non-coding downstream 153003 86728503 ~ 86732160 (-)
G198334 LOC106561456 non-coding upstream 48064 86935403 ~ 86937181 (-)
G198543 NA non-coding upstream 223182 87110521 ~ 87110780 (-)
G198547 NA non-coding upstream 226083 87113422 ~ 87113621 (-)
G198552 NA non-coding upstream 235404 87122743 ~ 87123099 (-)
G198562 NA non-coding upstream 245680 87133019 ~ 87133236 (-)
G197554 NA other downstream 921498 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1041670 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2245407 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2902996 83977965 ~ 83982167 (-)
G195427 NA other downstream 2980712 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 15697 86903036 ~ 86903956 (-)
G198912 NA other upstream 434800 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 2719498 89606837 ~ 89609890 (-)
G202279 NA other upstream 3490218 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4701873 91589212 ~ 91591049 (-)

Expression


Co-expression Network