si:ch211-266k8.4 (LOC106561457)


Basic Information

Item Value
gene id si:ch211-266k8.4
gene name LOC106561457
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86973327 ~ 87027553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038628.1
AAGGGTCATTGCACCGCCACTGTTTGCTACAAGATACAAAGGCCCAATTTATTTGATAGTACAGATGCAATGGTTTATGAGATATTGGCCTAATTCGGAGAAAACATTGCTCAGTAGGCCACACACACATCAGAACGTTTGAAGCAGTTGTGGATCTTGAATACACCCCACTTTCATTTGTCAGTTGTGAATGACGTAAACCGAAATAACGGGCGCGGTGTTTGAACGTTGACAGTGTTCCAGAGAAACAAAGTAGCGAACCGTATAACATTTCATGCACAGTCTTTGAAACAGTTACAAAGTAACTAATTTAGAATGGGTAGAAGAAGAAGCAGCACATTCTCAATTAAAAGGCGCGCTACTGAAGGTTTGGTGTTTGACGAATTCGGGTTTGCCCAGACTAAAAGAAAGGACCAAAAACTTCAACACCGATGTCACGATTACAGTTACCCCCAACTCAACGCCCGTAGGGTGAAGGAATTGTGTGAGCTTCTTAGTTACTGGAATGGATCCAGTTTCATCTGCAGAAGCCAGATCGAACGTTTTATGAGAATGGGAATCCCTCCAGCTTTAAGAGGGCGAGTGTGGAAGTGCCTTCTCAACATCGACAAACTAAGAGAATCCAGTGCTTTTAACTATCAGAAATGTTTGGATGAGATCCGAGGGCCCCTGGTTGACCTGGGAGTTAGTGAATACGGAATCATCTCAGCCATAGCTACTTTGAATGACACAGAGAATGACCTGGGGTCCAACCAACTTCCCTCCCGCTGTCCCCCGGACTTGGCCTACTCCAGTGCAGATGTCACCATCTTTCGTCAGATCGCTCTGGATCTGCAAAGATCCTTCCCAACCCATCGCACCCTGATGGGCGAGAGTCCTGAGGCAATAGAAGGCCAAGCCAAGCTCTTCCGAGTCCTCATCGCCTACGCAAAGTACAACCCTAAGATTGGGTATAGCCAAGGAATGTCATACATCGCTGCAGTGCTTCTTATGCACCTAAGTGAAGAGGAGGCCTTCTGGGCCTTGGGAGTTCTTCTAGAGAAGCCTAAATATCTGTCAGAGCTGTTTGACCTCTCCGGGGAGAAGATCCAGCATCAAGCGATGGTGTTTCACCAGTTCTTCAAACACAGGAAACCTCAGCTCTCCAAGCACATAGAGGATGTAAGGGTTTCGTCCATCCATTTTGTTATGCCTTGGTTCCTAACCCTGTTCACCTCCCTGCCCTGCTGGGACTCTGTGCTGGCCATATGGGACCTCATCATGTTGCATGGCCTCTCTGCTGTGTTCCGTACTGGTCTTACCATCATTCAGCTGCTGGAGTCTCGGCTAATGAATCTGACTGACGAGGCTGCCGTGCTACCCCTGCTGCTAAGGGTACCTGTGGATGTCTCTCAGCACTGTGTCCTGCTCCCAGCCCTGTGGAGCACAGAGGTACAGGAGTGGGAGATCAAGTGCATGAACAGCCTGGTGTTGGAAGAGACCGAGGGACACCACTTAGGAAAAATTGAGAAACCTATTCCACCACCACTGCCCACTAAGGTGAAGGAGCAGGAGAAGAGTGTGGATGGACCTAAATTGGAAGCCAAGAACTCAGTAAGGAAGGATTCATCGGTGTCCAGTGTTAAGAACGTGTTCACCCGGCTAGTGAGGATGGCCCAGTGCTACCTGCTGGATAAAGACTGTCAGAGTGGGGACAGTAAGCCTTCCCCATCCCAAGGCAGCTCTGCCAGGCGCCGCTCCTCCAAGGCCAGCAGGACAACTTCCTCAATCACACAGtccagaTCAGAGCCAAGAGGAGTCAAAGGGGCGTGTCCCAGCAGGGAAGTGTGAGTCAGACCAGAGGAGGGACCCTTCCCGGTTCTATCCCAGACTCAGATGGGTCGGTCAAAGACAGCAGGCCAGAGCCAGCAGCGTTTAGGAGAATGGGTTCTGGTCCCGTGGGCAGGGTGGCGCGTAGACGCAGCAGTCTGCCCCCCAGAGTTGAGTCCCTCCGCCTGCTCCGGACCAGGACCCCCCAGTCCCCATCGCCC
>XR_005038629.1
AAGGGTCATTGCACCGCCACTGTTTGCTACAAGATACAAAGGCCCAATTTATTTGATAGTACAGATGCAATGGTTTATGAGATATTGGCCTAATTCGGAGAAAACATTGCTCAGTAGGCCACACACACATCAGAACGTTTGAAGCAGTTGTGGATCTTGAATACACCCCACTTTCATTTGTCAGTTGTGAATGACGTAAACCGAAATAACGGGCGCGGTGTTTGAACGTTGACAGTGTTCCAGAGAAACAAAGTAGCGAACCGTATAACATTTCATGCACAGTCTTTGAAACAGTTACAAAGTAACTAATTTAGAATGGGTAGAAGAAGAAGCAGCACATTCTCAATTAAAAGGCGCGCTACTGAAGGTTTGGTGTTTGACGAATTCGGGTTTGCCCAGACTAAAAGAAAGGACCAAAAACTTCAACACCGATGTCACGATTACAGTTACCCCCAACTCAACGCCCGTAGGGTGAAGGAATTGTGTGAGCTTCTTAGTTACTGGAATGGATCCAGTTTCATCTGCAGAAGCCAGATCGAACGTTTTATGAGAATGGGAATCCCTCCAGCTTTAAGAGGGCGAGTGTGGAAGTGCCTTCTCAACATCGACAAACTAAGAGAATCCAGTGCTTTTAACTATCAGAAATGTTTGGATGAGATCCGAGGGCCCCTGGTTGACCTGGGAGTTAGTGAATACGGAATCATCTCAGCCATAGCTACTTTGAATGACACAGAGAATGACCTGGGGTCCAACCAACTTCCCTCCCGCTGTCCCCCGGACTTGGCCTACTCCAGTGCAGATGTCACCATCTTTCGTCAGATCGCTCTGGATCTGCAAAGATCCTTCCCAACCCATCGCACCCTGATGGGCGAGAGTCCTGAGGCAATAGAAGGCCAAGCCAAGCTCTTCCGAGTCCTCATCGCCTACGCAAAGTACAACCCTAAGATTGGGTATAGCCAAGGAATGTCATACATCGCTGCAGTGCTTCTTATGCACCTAAGTGAAGAGGAGGCCTTCTGGGCCTTGGGAGTTCTTCTAGAGAAGCCTAAATATCTGTCAGAGCTGTTTGACCTCTCCGGGGAGAAGATCCAGCATCAAGCGATGGTGTTTCACCAGTTCTTCAAACACAGGAAACCTCAGCTCTCCAAGCACATAGAGGATGTAAGGGTTTCGTCCATCCATTTTGTTATGCCTTGGTTCCTAACCCTGTTCACCTCCCTGCCCTGCTGGGACTCTGTGCTGGCCATATGGGACCTCATCATGTTGCATGGCCTCTCTGCTGTGTTCCGTACTGGTCTTACCATCATTCAGCTGCTGGAGTCTCGGCTAATGAATCTGACTGACGAGGCTGCCGTGCTACCCCTGCTGCTAAGGGTACCTGTGGATGTCTCTCAGCACTGTGTCCTGCTCCCAGCCCTGTGGAGCACAGAGGTACAGGAGTGGGAGATCAAGTGCATGAACAGCCTGGTGTTGGAAGAGACCGAGGGACACCACTTAGGAAAAATTGAGAAACCTATTCCACCACCACTGCCCACTAAGGTGAAGGAGCAGGAGAAGAGTGTGGATGGACCTAAATTGGAAGCCAAGAACTCAGTAAGGAAGGATTCATCGGTGTCCAGTGTTAAGAACGTGTTCACCCGGCTAGTGAGGATGGCCCAGTGCTACCTGCTGGATAAAGACTGTCAGAGTGGGGACAGTAAGCCTTCCCCATCCCAAGGCAGCTCTGCCAGGCGCCGCTCCTCCAAGGCCAGCAGGACAACTTCCTCAATCACACAGCAGGCCAGAGCCAGCAGCGTTTAGGAGAATGGGTTCTGGTCCCGTGGGCAGGGTGGCGCGTAGACGCAGCAGTCTGCCCCCCAGAGTTGAGTCCCTCCGCCTGCTCCGGACCAGGACCCCCCAGTCCCCATCGCCCTCTCCCTCCAGCCCAGCACAAACACTGGCCCATCAGAGACGGAAAACAGCCCTATCCAGGGAACTGCCATCAAGATGTCACTGCCTGAATAAGACTACCAACCCCTTAAGGAACACTCAGGAGTCCCAACTCATCTGAGGAAAGGAGGACCTGCACTTGATGGTACTCTTGTTTATGCCCTCAAAACCCAACACGGAGGACTACAGAGTAATGTCCCCATGGAAACTTTTTAAACATCACATGCAAGATCCAACCTTCCTGGATGTCTTAGATTAATCACTGCTCATAGTTGTGAATATCATTGTCCTAGGAAGGGCCTTCTGATATGGGGCATTGCTCCATATCCTCTTTCCAATGTTTGTCCTACCACTGCTAGCCAGCGATTTAGCACTCGCTGGGTAGTAAGAACAGTGACTTTTCACTCAGCCCTCTGGTGCGACGACTAGGCTAAAGGTGGGATTTGCTGTGTCATCATATTTTAGCACTCCATGTGGGAGTGTATATTTCGTTGTGAATTCTACCTCCTGAATTTCTGTGACGTCGCTCCAGTGGAGTTGTTTGTTGTTTTAATATATCTTGTACTCGTAGAGACGTCAATGTTTTTATTGTATAGCTGTtttgaaataataaaatattaacCCTTCTAA
>XM_021575388.2
GGGTCATTGCACCGCCACTGTTTGCTACAAGATACAAAGGCCCAATTTATTTGATAGTACAGATGCAATGGTTTATGAGATATTGGCCTAATTCGGAGAAAACATTGCTCAGTAGGCCACACACACATCAGAACGTTTGAAGCAGTTGTGGATCTTGAATACACCCCACTTTCATTTGTCAGTTGTGAATGACGTAAACCGAAATAACGGGCGCGGTGTTTGAACGTTGACAGTGTTCCAGAGAAACAAAGTAGCGAACCGTATAACATTTCATGCACAGTCTTTGAAACAGTTACAAAGTAACTAATTTAGAATGGGTAGAAGAAGAAGCAGCACATTCTCAATTAAAAGGCGCGCTACTGAAGGTTTGGTGTTTGACGAATTCGGGTTTGCCCAGACTAAAAGAAAGGACCAAAAACTTCAACACCGATGTCACGATTACAGTTACCCCCAACTCAACGCCCGTAGGGTGAAGGAATTGTGTGAGCTTCTTAGTTACTGGAATGGATCCAGTTTCATCTGCAGAAGCCAGATCGAACGTTTTATGAGAATGGGAATCCCTCCAGCTTTAAGAGGGCGAGTGTGGAAGTGCCTTCTCAACATCGACAAACTAAGAGAATCCAGTGCTTTTAACTATCAGAAATGTTTGGATGAGATCCGAGGGCCCCTGGTTGACCTGGGAGTTAGTGAATACGGAATCATCTCAGCCATAGCTACTTTGAATGACACAGAGAATGACCTGGGGTCCAACCAACTTCCCTCCCGCTGTCCCCCGGACTTGGCCTACTCCAGTGCAGATGTCACCATCTTTCGTCAGATCGCTCTGGATCTGCAAAGATCCTTCCCAACCCATCGCACCCTGATGGGCGAGAGTCCTGAGGCAATAGAAGGCCAAGCCAAGCTCTTCCGAGTCCTCATCGCCTACGCAAAGTACAACCCTAAGATTGGGTATAGCCAAGGAATGTCATACATCGCTGCAGTGCTTCTTATGCACCTAAGTGAAGAGGAGGCCTTCTGGGCCTTGGGAGTTCTTCTAGAGAAGCCTAAATATCTGTCAGAGCTGTTTGACCTCTCCGGGGAGAAGATCCAGCATCAAGCGATGGTGTTTCACCAGTTCTTCAAACACAGGAAACCTCAGCTCTCCAAGCACATAGAGGATGTAAGGGTTTCGTCCATCCATTTTGTTATGCCTTGGTTCCTAACCCTGTTCACCTCCCTGCCCTGCTGGGACTCTGTGCTGGCCATATGGGACCTCATCATGTTGCATGGCCTCTCTGCTGTGTTCCGTACTGGTCTTACCATCATTCAGCTGCTGGAGTCTCGGCTAATGAATCTGACTGACGAGGCTGCCGTGCTACCCCTGCTGCTAAGGGTACCTGTGGATGTCTCTCAGCACTGTGTCCTGCTCCCAGCCCTGTGGAGCACAGAGGTACAGGAGTGGGAGATCAAGTGCATGAACAGCCTGGTGTTGGAAGAGACCGAGGGACACCACTTAGGAAAAATTGAGAAACCTATTCCACCACCACTGCCCACTAAGGTGAAGGAGCAGGAGAAGAGTGTGGATGGACCTAAATTGGAAGCCAAGAACTCAGTAAGGAAGGATTCATCGGTGTCCAGTGTTAAGAACGTGTTCACCCGGCTAGTGAGGATGGCCCAGTGCTACCTGCTGGATAAAGACTGTCAGAGTGGGGACAGTAAGCCTTCCCCATCCCAAGGCAGCTCTGCCAGGCGCCGCTCCTCCAAGGCCAGCAGGACAACTTCCTCAATCACACAGaTCAGAGCCAAGAGGAGTCAAAGGGGCGTGTCCCAGCAGGGAAGTGTGAGTCAGACCAGAGGAGGGACCCTTCCCGGTTCTATCCCAGACTCAGATGGGTCGGTCAAAGACAGCAGGCCAGAGCCAGCAGCGTTTAGGAGAATGGGTTCTGGTCCCGTGGGCAGGGTGGCGCGTAGACGCAGCAGTCTGCCCCCCAGAGTTGAGTCCCTCCGCCTGCTCCGGACCAGGACCCCCCAGTCCCCATCGCCCTCTCCCTCCAGCCCAGCACAAACACTGGCCCATCAGAGACGGAAAACAGCCCTATCCAGGGAACTGCCATCAAGATGTCACTGCCTGAATAAGACTACCAACCCCTTAAGGAACACTCAGGAGTCCCAACTCATCTGAGGAAAGGAGGACCTGCACTTGATGGTACTCTTGTTTATGCCCTCAAAACCCAACACGGAGGACTACAGAGTAATGTCCCCATGGAAACTTTTTAAACATCACATGCAAGATCCAACCTTCCTGGATGTCTTAGATTAATCACTGCTCATAGTTGTGAATATCATTGTCCTAGGAAGGGCCTTCTGATATGGGGCATTGCTCCATATCCTCTTTCCAATGTTTGTCCTACCACTGCTAGCCAGCGATTTAGCACTCGCTGGGTAGTAAGAACAGTGACTTTTCACTCAGCCCTCTGGTGCGACGACTAGGCTAAAGGTGGGATTTGCTGTGTCATCATATTTTAGCACTCCATGTGGGAGTGTATATTTCGTTGTGAATTCTACCTCCTGAATTTCTGTGACGTCGCTCCAGTGGAGTTGTTTGTTGTTTTAATATATCTTGTACTCGTAGAGACGTCAATGTTTTTATTGTATAGCTGTtttgaaataataaaatattaacCCTTCTAA
>XM_036958123.1
ATCGAACGTTTTATGAGAATGGGAATCCCTCCAGCTTTAAGAGGGCGAGTGTGGAAGTGCCTTCTCAACATCGACAAACTAAGAGAATCCAGTGCTTTTAACTATCAGAAAGATCCTTCCCAACCCATCGCACCCTGATGGGCGAGAGTCCTGAGGCAATAGAAGGCCAAGCCAAGCTCTTCCGAGTCCTCATCGCCTACGCAAAGTACAACCCTAAGATTGGGTATAGCCAAGGAATGTCATACATCGCTGCAGTGCTTCTTATGCACCTAAGTGAAGAGGAGGCCTTCTGGGCCTTGGGAGTTCTTCTAGAGAAGCCTAAATATCTGTCAGAGCTGTTTGACCTCTCCGGGGAGAAGATCCAGCATCAAGCGATGGTGTTTCACCAGTTCTTCAAACACAGGAAACCTCAGCTCTCCAAGCACATAGAGGATGTAAGGGTTTCGTCCATCCATTTTGTTATGCCTTGGTTCCTAACCCTGTTCACCTCCCTGCCCTGCTGGGACTCTGTGCTGGCCATATGGGACCTCATCATGTTGCATGGCCTCTCTGCTGTGTTCCGTACTGGTCTTACCATCATTCAGCTGCTGGAGTCTCGGCTAATGAATCTGACTGACGAGGCTGCCGTGCTACCCCTGCTGCTAAGGGTACCTGTGGATGTCTCTCAGCACTGTGTCCTGCTCCCAGCCCTGTGGAGCACAGAGGTACAGGAGTGGGAGATCAAGTGCATGAACAGCCTGGTGTTGGAAGAGACCGAGGGACACCACTTAGGAAAAATTGAGAAACCTATTCCACCACCACTGCCCACTAAGGTGAAGGAGCAGGAGAAGAGTGTGGATGGACCTAAATTGGAAGCCAAGAACTCAGTAAGGAAGGATTCATCGGTGTCCAGTGTTAAGAACGTGTTCACCCGGCTAGTGAGGATGGCCCAGTGCTACCTGCTGGATAAAGACTGTCAGAGTGGGGACAGTAAGCCTTCCCCATCCCAAGGCAGCTCTGCCAGGCGCCGCTCCTCCAAGGCCAGCAGGACAACTTCCTCAATCACACAGaTCAGAGCCAAGAGGAGTCAAAGGGGCGTGTCCCAGCAGGGAAGTGTGAGTCAGACCAGAGGAGGGACCCTTCCCGGTTCTATCCCAGACTCAGATGGGTCGGTCAAAGACAGCAGGCCAGAGCCAGCAGCGTTTAGGAGAATGGGTTCTGGTCCCGTGGGCAGGGTGGCGCGTAGACGCAGCAGTCTGCCCCCCAGAGTTGAGTCCCTCCGCCTGCTCCGGACCAGGACCCCCCAGTCCCCATCGCCCTCTCCCTCCAGCCCAGCACAAACACTGGCCCATCAGAGACGGAAAACAGCCCTATCCAGGGAACTGCCATCAAGATGTCACTGCCTGAATAAGACTACCAACCCCTTAAGGAACACTCAGGAGTCCCAACTCATCTGAGGAAAGGAGGACCTGCACTTGATGGTACTCTTGTTTATGCCCTCAAAACCCAACACGGAGGACTACAGAGTAATGTCCCCATGGAAACTTTTTAAACATCACATGCAAGATCCAACCTTCCTGGATGTCTTAGATTAATCACTGCTCATAGTTGTGAATATCATTGTCCTAGGAAGGGCCTTCTGATATGGGGCATTGCTCCATATCCTCTTTCCAATGTTTGTCCTACCACTGCTAGCCAGCGATTTAGCACTCGCTGGGTAGTAAGAACAGTGACTTTTCACTCAGCCCTCTGGTGCGACGACTAGGCTAAAGGTGGGATTTGCTGTGTCATCATATTTTAGCACTCCATGTGGGAGTGTATATTTCGTTGTGAATTCTACCTCCTGAATTTCTGTGACGTCGCTCCAGTGGAGTTGTTTGTTGTTTTAATATATCTTGTACTCGTAGAGACGTCAATGTTTTTATTGTATAGCTGTtttgaaataataaaatattaacCCTTCTAA

Function

NR:

description
carabin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038628.1 False 2030 mRNA 0.51 14 86973327 87013424
XR_005038629.1 False 2559 mRNA 0.49 14 86973327 87027553
XM_021575388.2 False 2670 mRNA 0.49 15 86973329 87027553
XM_036958123.1 True 1945 mRNA 0.51 12 86981120 87027553

Neighbor

gene id symbol gene type direction distance location
LOC110498720 LOC106561456 coding upstream 36110 86910470 ~ 86937217 (+)
LOC118942939 NA coding upstream 85301 86887279 ~ 86888026 (+)
zgc:162634 NA coding upstream 87955 86884172 ~ 86898082 (+)
LOC110498682 LOC106561452 coding upstream 100062 86787804 ~ 86873265 (+)
trnag-gcc-9 NA coding upstream 245372 86727885 ~ 86727955 (+)
dkk3b LOC106561478 coding downstream 240381 87267934 ~ 87276184 (+)
far1 LOC106561480 coding downstream 261209 87288762 ~ 87323586 (+)
LOC118937298 ovch2 coding downstream 308244 87335797 ~ 87338557 (+)
LOC118942946 ovch2 coding downstream 313357 87340910 ~ 87341891 (+)
LOC110498866 ovch2 coding downstream 318045 87345598 ~ 87351199 (+)
G198258 NA non-coding upstream 66547 86906483 ~ 86906780 (+)
G198257 NA non-coding upstream 66853 86905951 ~ 86906474 (+)
G198254 NA non-coding upstream 72256 86900870 ~ 86901071 (+)
G198234 NA non-coding upstream 97336 86875703 ~ 86875991 (+)
G198479 NA non-coding downstream 89522 87117075 ~ 87117488 (+)
G198482 NA non-coding downstream 92235 87119788 ~ 87120017 (+)
G198569 NA non-coding downstream 115991 87143544 ~ 87144263 (+)
G198571 NA non-coding downstream 118308 87145861 ~ 87146134 (+)
G198586 NA non-coding downstream 139754 87167307 ~ 87167539 (+)
G197069 NA other upstream 836719 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1953293 85010068 ~ 85054392 (+)
G195155 NA other upstream 2373003 84596410 ~ 84600324 (+)
G194395 NA other upstream 3413729 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3848362 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 9958 87037511 ~ 87039236 (+)
G198575 NA other downstream 122649 87150202 ~ 87150490 (+)
G198784 NA other downstream 466070 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 508383 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 839324 87866877 ~ 87867967 (+)

Expression


Co-expression Network