XLOC_020718


Basic Information

Item Value
gene id XLOC_020718
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2233989 ~ 2275936 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042276
GTCAGATGTTTCCTCAGCTCTGCAGGCCTCAAAAACGTTTTGCCGCACTGATCACATTTatgcggtttctctccagtgtggagcATCATGTGTTCATTGCGGGACGATGAAactctgaaactcttcccacactgagcacACGagtacggcttctctccggtgtggatcctctCGTGCGCTACCAGATGTCCCGAATGTCTGAATGTTttgttgcagtgtgaacacacgaacggcctctctccagtgtggatcatctggTGCTGCTTCAGGTCTGTAGCCCTAACAAAAGTCTTCTCGCACTCGAAGCATGCGTGCGCTCTCACACCAGCGTGGATCTTCTGATGGGCGTTTAAAACTTGTAAACGTGCAAAACTCTTCCCGCACACAGGACACGAATAAGGCTTCTCCTGTGTATGATATCTAAGATGGTCCTTCAGCTGAGAAGCTCTCGAAAAAGCTTTGTCGCATTGGTCACATTTGtgcgGTTTTCTCCAAAAATAAatcttgtatcagagctgcagcaatgttttgtcagcttgtcatcctctgagaatcCGGTTGATGGTCAACTAGCAACATACGAACCCCATTCTCCTCCTGTGTATGAGCTAGAAAATGTTTCCTCAGCTCTATAGCCCTGAAAAATGTTTTGTCGCATTGGTCACATTTatgcggtttctctccagtgtggcgcAGCATGTGTACGTTAAGGGAAGACGAAGctctgaaactcatcccacattgAGTAcacgtgtacggtttctctccagtgtgaacacTCTCATGTACTCTCAGATTTCCTGATTGACTGAatgtcttgtcgcagtgtgaacacttgaagggtttctctccagtgtggatcctctggTGTCGTTTCAAGCCGCTAGCTGTAATGAAACTCTTCTCGCACTCAAGGCACACAAACTCCTTCAGACCAGTGTGGATCTGCTCATGTGCATTTAACTCTCGTAAACgtttaaaactcttcccacactcagagCACGGATAAGGCCTCTCGTTTGTGTAAACTCTAAGATGCTCCTTCAGCTCTGAAgccctcaaaaatgttttgccgcactgatcacacttgtgtgttctctctccagtgtggatcatctcaTGTGTTGTCATGAGTCTTAACTggctgaatctcttgtcgcagtgtgaacacttgtaaggctTCTCTACAAGGTgtatcatcatgtgttgattaaggtttgatggTTGCTTACAACTCTTTCCACAAGGACTCTGTGTGTATATCTTCTTTCCCGTGTGAATCCTTATCTGATGGTCTTTTAAATTTGACAGACGACTAAAATTCTTTCCACACTCAGAACAGGAATGAGGCTTCACGATTGTATGAACTCGAAGATGCTCCTTCAGATCTGAAGCCTTCAAAAATGTTTTACCGCACTGATCACAGTCgtgtgttttctctctagtgtggatcatCTCATGTGCTTTCATGTGTCTTAACTggctgaatctcttgtcgcagtgtgaacacttgtaaggctTCTCTACAATGTGGATCAGCATGTGTTTATTAAGAGTTACCGATTGTTTAAAACTCATCCCACACACAGTACATGTGAAGGGTCTCTCTTCAGTGTGGACTATCTGGTGTCGTTTCAAGTCTCCAGTTTtaataaaactcttcccacagtcGATGCACACAtgctctctcacaccagtgtggaacTTCTGATGCTCATTCAAAATTGACCGCTGagaaaaactctttccacactcagcgCACGAataaggcttctcctttgtatgaACTCTAAGATGTCTCTTCAAAGTTGAAGACCTTGAAAAGAGTTTGTCGCACTGATCACACTTgtgtggtttctctccagtgtgggtcttctcATGCCTCTTCAGGTGGGCTGAACAAtggaatctcttgtcgcagtgggaacacttgtaaggtttctctccagtgtggattctcatgtgaaCGTTGAGGTCGTATTTCTggttaaaactctttccacactgagtgcagGTGAaatcttttcttttc
>TCONS_00042277
atctctgggttttgttcaggagtgagggaaggatggaatgtgagattgaccggcggattggtgcagcagcagcagtaatgcggtcgatgtgccggtccgttgtggtgaagatgagccaaaaggcaaagctctcaatttgctgatcaatctacgttcctactctcacccatggtcatgaccgaaaggacaagatctcggatacaagaggctgaaatgagtttccttcaggGGTGGCAGGGATTAAAgatgctgctcctccacattgagagaagtcagctgaggtggctcgggcatctgtttcggatgcctcctggacgcctacctagggaggtgttccaggcatgtcccaccggatggaggcctcggggaagacccaggacacgctggaaggactatgtctctcggctggtctGGGAATGCCTTGGGATCCCCTCGGAGGAGCAGGAGGacgtgtctggggagagggaagtctggggttctctcctaagactgctgcccccactaCCCAGCCCCAGAAAAGAggcagaaaatgaattaatggatgaataCATTTTCTGGAAGAAATAACAAAAACGAGAGGATTGTGGGATATGGGTCTGAAATAAGTATAATGGGCGTGACGCACTTGCGCCTTCCAGGCACACCAAGTTGAATGAATGCCACAAGTGCACTGAGAGTCACATGACAATaactgactgatcagctttatactttataacagGGGTGACCAAACTTGATCCTGCatgtccggtgtcctgcaggttttagctccaatcctaatcaaacacacctgaacgagctaatcaaagtcttactaggtatacttgaaacacctaggcaggtgtgttgaggcaagttggagctaaaacctgcagggcaccagacctccaggagtgagattggtgacccctgctttataaggtatatacacatttcggtaagaCTAATTACCTCTAGACtgacacagaacacccaaacactgcagttctTTTAGGTTTTCTCCAAAAATAAatcttgtatcagagctgcagcaatgttttgtcagcttgtcatcctctgagaatcCGGTTGATGGTCAACTAGCAACATACGAACCCCATTCTCCTCCTGTGTATGAGCTAGAAAATGTTTCCTCAGCTCTATAGCCCTGAAAAATGTTTTGTCGCATTGGTCACATTTatgcggtttctctccagtgtggcgcAGCATGTGTACGTTAAGGGAAGACGAAGctctgaaactcatcccacattgAGTAcacgtgtacggtttctctccagtgtgaacacTCTCATGTACTCTCAGATTTCCTGATTGACTGAatgtcttgtcgcagtgtgaacacttgaagggtttctctccagtgtggatcctctggTGTCGTTTCAAGCCGCTAGCTGTAATGAAACTCTTCTCGCACTCAAGGCACACAAACTCCTTCAGACCAGTGTGGATCTGCTCATGTGCATTTAACTCTCGTAAACgtttaaaactcttcccacactcagagCACGGATAAGGCCTCTCGTTTGTGTAAACTCTAAGATGCTCCTTCAGCTCTGAAgccctcaaaaatgttttgccgcactgatcacacttgtgtgttctctctccagtgtggatcatctcaTGTGTTGTCATGAGTCTTAACTggctgaatctcttgtcgcagtgtgaacacttgtaaggctTCTCTACAAGGTgtatcatcatgtgttgattaaggtttgatggTTGCTTACAACTCTTTCCACAAGGACTCTGTGTGTATATCTTCTTTCCCGTGTGAATCCTTATCTGATGGTCTTTTAAATTTGACAGACGACTAAAATTCTTTCCACACTCAGAACAGGAATGAGGCTTCACGATTGTATGAACTCGAAGATGCTCCTTCAGATCTGAAGCCTTCAAAAATGTTTTACCGCACTGATCACAGTCgtgtgttttctctctagtgtggatcatCTCATGTGCTTTCATGTGTCTTAACTggctgaatctcttgtcgcagtgtgaacacttgtaaggctTCTCTACAATGTGGATCAGCATGTGTTTATTAAGAGTTACCGATTGTTTAAAACTCATCCCACACACAGTACATGTGAAGGGTCTCTCTTCAGTGTGGACTATCTGGTGTCGTTTCAAGTCTCCAGTTTtaataaaactcttcccacagtcGATGCACACAtgctctctcacaccagtgtggaacTTCTGATGCTCATTCAAAATTGACCGCTGagaaaaactctttccacactcagcgCACGAataaggcttctcctttgtatgaACTCTAAGATGTCTCTTCAAAGTTGAAGACCTTGAAAAGAGTTTGTCGCACTGATCACACTTgtgtggtttctctccagtgtgggtcttctcATGCCTCTTCAGGTGGGCTGAACAAtggaatctcttgtcgcagtgggaacacttgtaaggtttctctccagtgtggattctcatgtgaaCGTTGAGGTCGTATTTCTggttaaaactctttccacactgagtgcaggtgaaacctTTCCTTTTCTTTAGAAAATTGTGTTCGTCCTCTGCGTGAGTTTCTTCTTCACtcttgacatgatgtttctcctc

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0019371 cyclooxygenase pathway biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0043034 costamere cellular_component
GO:0004666 prostaglandin-endoperoxide synthase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042276 False 2032 lncRNA 0.45 3 2233989 2275936
TCONS_00042277 True 2607 lncRNA 0.46 2 2241507 2245087

Neighbor

gene id symbol gene type direction distance location
XLOC_020717 NA coding downstream 5737 2224761 ~ 2228252 (-)
XLOC_020711 NA coding downstream 10002 2061685 ~ 2223987 (-)
XLOC_020714 NA coding downstream 60648 2124609 ~ 2173341 (-)
XLOC_020713 NA coding downstream 108837 2096780 ~ 2125152 (-)
XLOC_020712 NA coding downstream 146139 2078625 ~ 2087850 (-)
XLOC_020722 NA coding upstream 190337 2466273 ~ 2482489 (-)
XLOC_020723 NA coding upstream 190403 2466339 ~ 2496857 (-)
XLOC_020724 NA coding upstream 195328 2471264 ~ 2524501 (-)
XLOC_020725 NA coding upstream 244996 2520932 ~ 2539642 (-)
XLOC_020726 NA coding upstream 252847 2528783 ~ 2538625 (-)

Expression


Co-expression Network