LOC110498882


Basic Information

Item Value
gene id LOC110498882
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87364250 ~ 87366299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575564.2
AAGGGAAACCACCCTCTGACCTAGTCCTGTAGACATGGGGAAGATAGAGAGCAAACAACCAGCCCCGGACATTCCCAAGAAAATCTCAACCTGGTGGGAGAGGCTACAGAAGAAGCCACCAGCTCCAACCATGACCATTCCAAACATGAACTTTAACTTCCCAACCctgtggggaaggagagagagcaagctACCAGACCCAGACATACCCAGTATATTCTCCACTCTGTGGAGAACCCCCAACAACCCCAACGATTTTGTCCCTCTATTCACCGACTGTGTGGGGATAGCTGCAGCTAGGACCCAGGAGTACCTCCTGTTCCTGGACCCAGAGGACAAGTTCCAGCCTAGCCCGTCAGCCCTCAATGATATCTTTCTAATGACCTACATCACCCAGAGCAGCCACCTCCACATGACCGACTCCTTCAACTGCACCACCATGACCAAGCAGCAGCGCATCCTCCTGGGTGCTGACTGGGTGTGGGCTGTGCTGGAGAGGCCCACCAAGAACCCCCGCATCCAGATCGCCGTGCAGATCCTGCACCTGCCCGAGAGGGGGGGAGGGCCAGCCGAGGACATTCCCCCAGAGGTATACACTGAATCCATGCAGATGGCCAAGATGGAGTCTGCTCATAAGAACAAGGCAGAGAGGATGGTGGATTTCTGTGCCTCCATCGGTAATGACTGCTacgccctctttctcctctttggCCGCAAGGGCGACCCGGGCAACATCTACGGAGTGCTGAGCAACAACTTTCACGCTGCTATAGGGAAGACTAAGATCAACCGTGCACTCATTGAGAATTTCTTTAAAGGATCCAGGTACTTACACACACCCACTGGAATGCTACAGGCTATTGTCACCAAGAGAGATTCTGACCCTTTAACTTTGCTCATCAAGTTTACCTGACCAGTGTGATCGATGACAGAGCAGCCATATGGGACCTTTCAGATTACtctgtttactgtagtgtttcaCATGGGACTGTTGTGATTGGTGGGTTTATGCTTGCCTGGGACTTGGGGACCCAGTGTGCTGAAATTGGCCTGTGTCCATATCTCATTTGTGGACTACTGACCCATGCCTGCTGACAGCTGCTCACACCCCTGTGGTTAGTATTTCTGTTAGagctctattcaatcagatccgctttagccgACATCCACATAGCGGTTCTTTTGGCAGTGTCGGAGATTAaactgtgttagagctgtcaaatccaaaAGCGGCTCCTGACATTATACCTAAAGCGAACATTGCTATTGGCTGCGCAGAGTCACATTaacagaaatcccatgcagccttgtttacaagttggaacactggaatgtgagatggaaTCTACATCTCCATTAAGATGATAGAAACCCTCATTATTTAGtttaatgattttcaatttgagcgtcattatttctatatagcctacactttctcctTCTGAACTTCTAACGAAAGTGGGACGGGTGGGGCTTTGTGACAAAgatcaagagcagctgctcaccgatttgacagctccaatgcAGTTACACCTCTGACACagccaaaacatcagctatgcaGGTGTCAGTTAATGCCAGTTAACGcatgatctgattgaatctaggccttaatGGACTTAACACTTCACTGGCATTGCACTTATGTGGAAATTCACACAAACGACCTATCTGCTATCACTACTCATTGACATTAAAACCTCTGTACAGCTTATGTTGACATGGAAACTATGATTTGCCACAAAATATGTTTGTATTTTCAAGGATGGACTTTATGACTGAACACATTGTGATAGCTTCACCCAAAACCGAATTCTAAATTCATTTGATTAAGGTGGATTATTCTCTTAAAGTTGAGTCAAAGTAGAAAATAACAGGATGGGGAGTTAAAAAATAAATTCATATATATTTCTGGATGTCTTGAGTTATCTTGTTTAGAAGAGGATTATTTATGTTGAGGATTATGCTCAGTGGTAAGTAGCAAAATGTAAATGAAGGGATTTGTGTTTCAATATGCAGGTTTGCTAAGGCCTCAtgttatatatacaca

Function

NR:

description
rab15 effector protein

GO: NA

KEGG:

id description
K20243 REP15; Rab15 effector protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575564.2 True 2050 mRNA 0.46 1 87364250 87366299

Neighbor

gene id symbol gene type direction distance location
mical2b LOC106573205 coding downstream 104647 87170110 ~ 87259603 (-)
LOC110498811 NA coding downstream 214143 87144723 ~ 87150107 (-)
LOC110498779 LOC106561460 coding downstream 225481 87043889 ~ 87138769 (-)
rassf10a LOC106561459 coding downstream 324734 87037294 ~ 87039516 (-)
LOC110498693 LOC106561455 coding downstream 396745 86938295 ~ 86967505 (-)
olfml1 LOC106561482 coding upstream 126302 87492601 ~ 87496745 (-)
syt9b LOC106561481 coding upstream 152621 87518920 ~ 87543745 (-)
LOC110498902 LOC106561484 coding upstream 199029 87565328 ~ 87689612 (-)
kiaa1549la kiaa1549l coding upstream 435763 87802062 ~ 87854859 (-)
LOC110498926 hipk3 coding upstream 493058 87859357 ~ 87900425 (-)
G198913 NA non-coding downstream 944 87362386 ~ 87363306 (-)
G198915 NA non-coding downstream 3093 87360648 ~ 87361157 (-)
G198914 NA non-coding downstream 4105 87358948 ~ 87360145 (-)
G198942 NA non-coding downstream 24644 87339254 ~ 87339606 (-)
G198936 LOC106561584 non-coding downstream 32916 87331056 ~ 87331334 (-)
G198975 NA non-coding upstream 130816 87497115 ~ 87498590 (-)
G198974 NA non-coding upstream 133255 87499554 ~ 87500280 (-)
G199004 NA non-coding upstream 181817 87548116 ~ 87548338 (-)
G199005 NA non-coding upstream 182273 87548572 ~ 87548793 (-)
G199006 NA non-coding upstream 185356 87551655 ~ 87551883 (-)
G198912 NA other downstream 37781 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 460294 86903036 ~ 86903956 (-)
G197554 NA other downstream 1400585 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1520757 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2724494 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 2240538 89606837 ~ 89609890 (-)
G202279 NA other upstream 3011258 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4222913 91589212 ~ 91591049 (-)
G204024 NA other upstream 4420888 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 5031761 92398054 ~ 92443838 (-)

Expression


Co-expression Network