syt9b (LOC106561481)


Basic Information

Item Value
gene id syt9b
gene name LOC106561481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87518920 ~ 87543745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575590.2
CAAAGCCATTCATTCAAGACCTTGACGAGCGCAGCTCTGTAATTCAGCACCACAGTCTAGTGAACAGCGCACAACGAAGGATAGCGAATGCCAGTGGATGGATTCAAACAGTGGCACAATATTTCCACACTTTATATTCAAACTAAAGTAATATTTCAGAGTAAAACTTAGTTGGATAAAGCTTTTCTCCACTCTCCGCTTGCGTGATGACGGTGTATGCAAAAAGTGCTCTTTGGGATGACTCTCTGCTCCCGGCACCGGGGATCGGGGTCTAGATAGGCGTTAGGAGTGGTGTGGAGCTGCGGAAGAGCCCCTCCATTCAGAAGGATGCTGGTGGGAAAtgcctggagacagagaggacgaGATTTGTCGAAAGGCTCTAGAACTGCTGTCGGATCTATGTTCTAGGGGCGAAGTGCAAAACGACAATTGTGTGGATTTCATATACTATTTTCGAGATCTTGCCAGACCGAGATACTCAGACTCAGATGTCTCGGTGAGCCTGCTGTCACTGTTGGTGACCACCTGTGGCCTGGCTCTTTTCGGGGTCTCACTCTTCTTTTCATGGAAGCTGTGCTGGGTGCCATGGTGCGACCGTGGCCTTCCCGAGGGCTTGAAGGATGGCCACGGGGACCAGCAGCCAGTCCTGATGGAGATGGATGGGGTGGAGAATGAATACAGTGAGGACTGTGTCAAGGAGCCCTCAGGCCTTTTAGCACCAGAGTCAGCCATGAAGATCAGCCACACGTCCCCAGACATCCCCCTGGAGGTCCAGTCCAAGCCCAAGGAGAACCACATCCGCCACATTGCCCGGGTGCAGCGCCAGATCACTGAACCCACCTCCTCTGTTCGGCACAACTCATTCCGTCGCCAGATGAACCTGTCCAACCCAGACTTCAACATGGGCCAGTTCCAGAGACAGGAGTCCCTGGCCACTCTGGGCCGGATCAAACCTGAGCTCTATAAGCAGCACTCCGTGGACACGGACGACGGCAGGAGGGCCGACAGCTGCGGCCGGATACACTTCATCCTCAAGTTCGACTGTGACCTGGAGCAGCTCATCATCAAGATCCACAAGGCCCAGGATTTACCGGCCAAGGACTTCACAGGAACCTCTGACCCTTATATCAAAATCTACCTGCTCCCCGACCGCAAGACCAAGCACCAGACCAAGGTTCACCGCAAGACCCTCAACCCCGTGTTCGATGAGGTCTTCCTGTTCCCTGTGGCCTACACTGAGCTGCCCACACGCAAACTGCACTTCAGTGTCTACGACTTTGACCGCTTCTCCCGCCACGACATCATTGGCCAGGTGGTGGTGGATAACTTCCTGGACCTAGCAGACTTCCCCAGAGAGACTAAACTCTGTAGGGACATCCAGTACGTCACCTCGGACAATGTGGACTTGGGCGATCTCATGTTCTCCCTGTGTTACCTACCAACGGCTGGAAGGCTGACCATCACAATGATCAAGGCTAGGAACCTCAAAGCCATGGACATCACTGGAGCCTcagATCCCTATGTGAAGGTGTCTTTGATGTGTGAGGGACGGAGGTTGAAGAAGAGGAAAACGTCCACCAAGCGAAACACTCTGAATCCAGTCTACAACGAAGCCATAGTATTTGATGTCCCTCCTGAGAACATTGATCAGATCAGTCTCCTAATAGCAGTGATGGACTACGATcgTGTAGGTCACAACGAGATCATTGGAGTGTGTAGGGTGGGCAACGAGGCAGAGAGCCTGGGTCGAGGCCACTGGAACGAGATGCTGTCGTACCCCCGCAAGCCCATCGCTCACTGGCACCCCCTAGTAGAgTGGGTGGGCCAGGGGACTGCAGGTGGAAGTCAGGGCGGTTCCACCAACTCTCTGAAGACTCCTCCCTCAccatgatattattattattattattattatgtggaGAACACAGGGTGGTGAAGAAGAGGATCAACAGAGAGCCTCAGCATCAAAAGAGTAGGAGAGCGCATTAAGCTGATGGTAGATGTTACACTCAGTTTCCCCGACTTAGTCCTGTACTAAGAAACATGCTACATAGAGAATCTCCATTTAACAGTGCTTTTGATCCAGGACCAGGCTTAAACCATGTCCGAGAAACCAGCCCTATGTGCTCCCACCGCAGAGTCTGTGCCTCCATGACATTCTTGCATGGAGGACCATATTTAGTAAACTGCATGTCCAGTGGCCATTCATTAGTACTATTTGTTTAAAACGCAACAAAGTGTTCCAGTTTCAATTGGGAGGTAACTGTATAGTCTTGTTTATGTCTTGTTTATAACACATTGTTACAATGAATTGGTATTTGTTCTTTGGGTACAGTGCATGGGTTCTTTCTTTTTCCCTGTAATATTGTCATTTCTAATGACCTTTGATTGATTACATGTGAAATACTAGCATACTGTAAACACAAAATGTACCATGAAACTAAGACCTAGTATGTAAATTGTCCATTCAGATGTTACTAAATAAATATTTCTATAGTAGTTCCAGTGA

Function

NR:

description
synaptotagmin-9-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19909 SYT9; synaptotagmin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575590.2 True 2509 mRNA 0.50 7 87518920 87543745

Neighbor

gene id symbol gene type direction distance location
olfml1 LOC106561482 coding downstream 22175 87492601 ~ 87496745 (-)
ppfibp2b LOC100380737 coding downstream 26336 87366163 ~ 87492584 (-)
LOC110498882 NA coding downstream 152621 87364250 ~ 87366299 (-)
mical2b LOC106573205 coding downstream 259317 87170110 ~ 87259603 (-)
LOC110498811 NA coding downstream 368813 87144723 ~ 87150107 (-)
LOC110498902 LOC106561484 coding upstream 21583 87565328 ~ 87689612 (-)
kiaa1549la kiaa1549l coding upstream 258317 87802062 ~ 87854859 (-)
LOC110498926 hipk3 coding upstream 315612 87859357 ~ 87900425 (-)
LOC110498933 depdc7 coding upstream 363754 87907499 ~ 87911415 (-)
dnajc24 dnajc24 coding upstream 641283 88185028 ~ 88205473 (-)
G198974 NA non-coding downstream 18640 87499554 ~ 87500280 (-)
G198975 NA non-coding downstream 20330 87497115 ~ 87498590 (-)
G198913 NA non-coding downstream 155614 87362386 ~ 87363306 (-)
G198915 NA non-coding downstream 157763 87360648 ~ 87361157 (-)
G198914 NA non-coding downstream 158775 87358948 ~ 87360145 (-)
G199004 NA non-coding upstream 4371 87548116 ~ 87548338 (-)
G199005 NA non-coding upstream 4827 87548572 ~ 87548793 (-)
G199006 NA non-coding upstream 7910 87551655 ~ 87551883 (-)
G199063 NA non-coding upstream 120041 87663786 ~ 87664315 (-)
G199086 NA non-coding upstream 154559 87698304 ~ 87698579 (-)
G198912 NA other downstream 192451 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 614964 86903036 ~ 86903956 (-)
G197554 NA other downstream 1555255 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1675427 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2879164 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 2063092 89606837 ~ 89609890 (-)
G202279 NA other upstream 2833812 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4045467 91589212 ~ 91591049 (-)
G204024 NA other upstream 4243442 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 4854315 92398054 ~ 92443838 (-)

Expression


Co-expression Network