LOC110498902 (LOC106561484)


Basic Information

Item Value
gene id LOC110498902
gene name LOC106561484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87565328 ~ 87689612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958296.1
GTGACAAACATTGATTTCCTTGTTTCCATTCGTCCACATGGCTGTGCTTTGCTTACACCGAAAATATCGTGAAGATTgcccatttattttatttttgtaaggACCCAAAAAATAGAGGCAGTGGGAtaacctattcaaTGACTCTGCACGCCTCCAGTCCCTCCTATTTCAGAGGCTTTACCCTTATCGCTctgaaggaggggaaggaaggaacCACAGATGACCACTACGCTGGCAAATTCCAGATCATAGATGAGGAAGACACCCAGTTCATGACCAACTGTCCCCCGGCTGTGACGGAGAGCACCCCCCGCAGGAGGACCAGGATACAAGTGTTCTGGACAGCACCCTCTTCTGGTAGCGGCTGTGTCATCCTCAAGGCCAGCATTGTGCAGAAGAGGATCATATACTTCCAGGATGAAGGCTCCCTCACCGTCAGATTGTGTGAGAAAGaggctGTGTTTGGAGAGACCACAGAAAAGCCCCCTCTGGAATGCTGTGCCTGTGGGACGGCCAAGTACAGAGTCACCTTCTTTGGGAACTGGTCGGAGAAGATTCACCCTAAAGACTACCCCAGACGTGCCAATCATTGGTCAGCCCTCATCGGGGCATCCCACTCCAGGAGCTACGTCCTGTGGGAGTACAGGGGCTTCGCCAGTGAAGGGGTGAAACAGGTGGCAGAGCTGGGGTCTCCAGTTAAGATGGAGGAAGAGATTAGACAGAAGggtGATGAAGTTCTGACTGTTATCAAAACCAAGGCGCAGTGGCCAGCATGGCAGCCCCTGAACGTGCGGGCAGCTCCCTCGGCTGAGTTCTCAGTAGACCGTACGCGTCACCTCATGTCCTTTCTGAGCATGCTGGGGCCCAGCCCTGACTGGAACGTGGGGCTGTCTGCAGAGGACCTCTGCACCAAGGAGTGTGGCTGGATCCAGAGGCTGGACCAAGACCTCATCCCCTGGGACGCAGGCACTGACAGTGGAGTCACCTATGAGTCTCCCAACAAGCCCACAATACCTCAGGAGAGGATCCGGTCCCTGACCAGCCTGGACCACCCCCAGAGCCCCTTCTATGACACAGAGGGAGGCCCTATCACAGCCTTGGCCcgggtagtggtggagaggataGCCCGAAAGGGAGAGCAGTGCAATATTGTCCCGGACACGGTGGACGATATCGTGGCAGATATTGgccaggaggagaaggaggaagACGACACTCCAGAGACGTGCATCTACTCCAACTGGTCTCCGTGGTCAGCCTGCAGCTCAGCCAGCTGTGACAAGGGCCGGAGGATGAGACAGAGGATGCTGAAGGCCCAGCTGGACCTCAGTGTGCCCTGCCCTCATACCCAGGACTTCAAGCCCTGCATGGGGCCTGGCTGCAGCGAGGAGGAAGTGTCTACCTGTATGATGTCAGAGTGGATCAGCTGGTCTCCATGCAGTGAGTCCTGTGGGATGGGGATGAGGTATCGGGAGCGCTACATCAAACAGTTCCCCGAAGATGGATCCATCTGCTCTCTGAACACTGAGGAGACAGAAAAGTGTGTGGTCAACGACGACTGCTCCCCTAGTAGCTGTGTGGTGACAGAGTGGGGCGAGTGGGATCCCTGCAGCACCACCTGTGGGCTGGGTATGAAGCGGCGTGAGCGCATGGTGAAGATGCCCCCCTCAGACGGTTCCATGTGCAAGGCGGAGTTGGCAGAGGTGGAGAAGTGCATGACGCCTGAGTGCAACACCATCCTGTGCATGCTGTCTCCGTGGTCGGACTGGAGCGTCTGTAGTGTAACGTGTGGGAAGGGCGTGAGGGCACGCCAGCGAATGCTCAAGTCTCCGGACCTAGGGGAGTGTACAGAGGAGCTGGAACAGGTGGAGCGGTGTATGCAGCCTGAGTGTCCTATGGACTGCATGGTGTCAGAGTGGACGGAGTGGTCCGAGTGTAATAAGTCCTGCGGCAAAGGCCACACCATCAGGACGCGCATGGTGAAGCTAGAGCCCCAGTTTGGAGGGGAGCCCTGCTCTGAGACGGTCCAGAGGAAGAAGTGTAAGATCAGGAAGTGCAAACGGGGCTCCAGGGCCAGCGAGGAGAAGAAGAGACGGCGGGGGGGAGAGGTGGGCGgcgggaaggagaagaggaggggaaaacAGCAAGGACGGGACGCAGCAGTGGAGGAACAGCCAGGTTGTAAGATGAAGCCCTGGTCCAGTTGGACGGACTGTTCCAAGTACTGCGGTGGGGGGATCCAGGAGCGCTTAATGGCTGTGAAGAAGAGAGCCAAGAGTGCCCCTGCACAGGTCACCAGCTGCAAGGACAGGAAGGAGATCCGTGCCTGTAATGTCCAGCCCTGCTAGGGGGCTCTGCTGTCTATCTGTGTTTATCTTTGTTAGGgctggggggaggaaggagaagcAGACTGTCAGTGTTGATTTAGCCTGGGTTGGCAGTCAGTGTGATGGATACAGCACCTGTGTGttggagggagatgagagattCTCCAGAGACTCCATTACTGTGGATCACTGGGCTGAGGACGAGACCAGCGTCAGTCATTAGTCTTATAGTAGCCTCCTCACTCAGCAGGCCAATGTATTACTATGTAACCAACACTATACAGTACACCACAACTTCACAATCACACACATGTTTTTTTACAATGTTGTTTTTGTCTTTATACTACAGTTGTATTGGCTTTACTAGCTAGCACTGGTAACACTCTTTCACTCTTGCATGTCTAACATTTCTCAGTCAGAAGACTTCACTGGTAGTGACCCTAGACTTCAAAATGTGGCCAAACGATGATGATAAAGGGCACTTGCAGATCTTAGAAAGAGACACTTCAGTCCAGGCCTCCAGTCTAGGGCATCAAAAGGAATTTGCATTTGGCATTTTTCCTGCCCCCAATTTCTTTATCCGCATCAGAGAGTTGAGTTTCACTCCAGCATTCATGTATCATTAAGGCAGGTCTCCAAACTTCACTGTCCGGTTGATTTGAGCATTGTAATCCTGCTGGTTGAACcacaatactccatacaggtTGTACAAGGTAGCTCCGTATACACAGTAAGACTTTTTTGGAAAATCAGTGTTGATTGttttgaaacattattgaatgaAAATACCAACCAAGTAATTTATAGAAAATATTTTATCCCGTGCTTAGTTTGTTAATTTGACAATTATATTCCAAGACAAAGCACAGGTGAACAATCATTCCAATTTTTGTATGCCTcaatacattattattttcaagACACGAATCTATTGTGACTTTTTATTCCATTGTAAGACATGTAGAGTCTTAAACACGCCTCGTTGAGTGTGCATAATtacatattttgtttattttgttgttgtattttgatAAGAATGTGAGACAAGACTCTTTCCAAAGTCATATGTAGATGTTCTCTCTGTCATTTTATcagtcctctctctttcttcttttgCCTCTACAACATATTACTATTTTGGAATAAATCACCTTTACCATAAAAGTAAACGTGATAAATCA
>XM_036958288.1
ATGTCAAATGCACCTCTCGGTCACAGGGGTGATTAGGAATGTCTGGGTTTTGTTTATACTCTGCTGCCTTCATCGCTACAATCTAGTTATTCCCTCGTTGTCGGGGACAGCTGTGCTGCTGCTCTTCGCTATTTCCCGGACCCTGAGAATTACTCCGTTAACTCAACACTCAAGCTACCTATCACCGCTTTCCTCTCAGATCAGTGTAACTGTATGCTGAAGCAGTGCCATCGAACTTCGAAACCCGCTCTGTCTGGGATGGATTCACCGCGGTTTCTCTCACCATTTATTACCAAGTGTCAGGGCTAATAGTTTGCAGGAATTCCGTAGTTGGGAACTGTAGGGAGATAATACATCCTCTATTTTGTTTCCTTTGTAGAGGTGGAATAAATAACTTCCCACCACACCATCAATAATGGGAATATATTTGAATTTTCTGCTTTTGCAGTATTTTGTCTCCAATTGTGTGTGCAATGCTCTCACGTTCGTCGAGGAACCAACAGATAAGCAAGCGAAGTCGGATGGATATTGCGGCAGGATTTTACGGGCACAGACACAGGGTACACGGAGAGATGGCTACAATGAGTTTCGGCTAAGAGTCGAGGGGGACCCAGAAAATTACCAACCTGCAAGCACATACAGAGTGACTCTGCACGCCTCCAGTCCCTCCTATTTCAGAGGCTTTACCCTTATCGCTctgaaggaggggaaggaaggaacCACAGATGACCACTACGCTGGCAAATTCCAGATCATAGATGAGGAAGACACCCAGTTCATGACCAACTGTCCCCCGGCTGTGACGGAGAGCACCCCCCGCAGGAGGACCAGGATACAAGTGTTCTGGACAGCACCCTCTTCTGGTAGCGGCTGTGTCATCCTCAAGGCCAGCATTGTGCAGAAGAGGATCATATACTTCCAGGATGAAGGCTCCCTCACCGTCAGATTGTGTGAGAAAGaggctGTGTTTGGAGAGACCACAGAAAAGCCCCCTCTGGAATGCTGTGCCTGTGGGACGGCCAAGTACAGAGTCACCTTCTTTGGGAACTGGTCGGAGAAGATTCACCCTAAAGACTACCCCAGACGTGCCAATCATTGGTCAGCCCTCATCGGGGCATCCCACTCCAGGAGCTACGTCCTGTGGGAGTACAGGGGCTTCGCCAGTGAAGGGGTGAAACAGGTGGCAGAGCTGGGGTCTCCAGTTAAGATGGAGGAAGAGATTAGACAGAAGggtGATGAAGTTCTGACTGTTATCAAAACCAAGGCGCAGTGGCCAGCATGGCAGCCCCTGAACGTGCGGGCAGCTCCCTCGGCTGAGTTCTCAGTAGACCGTACGCGTCACCTCATGTCCTTTCTGAGCATGCTGGGGCCCAGCCCTGACTGGAACGTGGGGCTGTCTGCAGAGGACCTCTGCACCAAGGAGTGTGGCTGGATCCAGAGGCTGGACCAAGACCTCATCCCCTGGGACGCAGGCACTGACAGTGGAGTCACCTATGAGTCTCCCAACAAGCCCACAATACCTCAGGAGAGGATCCGGTCCCTGACCAGCCTGGACCACCCCCAGAGCCCCTTCTATGACACAGAGGGAGGCCCTATCACAGCCTTGGCCcgggtagtggtggagaggataGCCCGAAAGGGAGAGCAGTGCAATATTGTCCCGGACACGGTGGACGATATCGTGGCAGATATTGgccaggaggagaaggaggaagACGACACTCCAGAGACGTGCATCTACTCCAACTGGTCTCCGTGGTCAGCCTGCAGCTCAGCCAGCTGTGACAAGGGCCGGAGGATGAGACAGAGGATGCTGAAGGCCCAGCTGGACCTCAGTGTGCCCTGCCCTCATACCCAGGACTTCAAGCCCTGCATGGGGCCTGGCTGCAGCGAGGAGGAAGTGTCTACCTGTATGATGTCAGAGTGGATCAGCTGGTCTCCATGCAGTGAGTCCTGTGGGATGGGGATGAGGTATCGGGAGCGCTACATCAAACAGTTCCCCGAAGATGGATCCATCTGCTCTCTGAACACTGAGGAGACAGAAAAGTGTGTGGTCAACGACGACTGCTCCCCTAGTAGCTGTGTGGTGACAGAGTGGGGCGAGTGGGATCCCTGCAGCACCACCTGTGGGCTGGGTATGAAGCGGCGTGAGCGCATGGTGAAGATGCCCCCCTCAGACGGTTCCATGTGCAAGGCGGAGTTGGCAGAGGTGGAGAAGTGCATGACGCCTGAGTGCAACACCATCCTGTGCATGCTGTCTCCGTGGTCGGACTGGAGCGTCTGTAGTGTAACGTGTGGGAAGGGCGTGAGGGCACGCCAGCGAATGCTCAAGTCTCCGGACCTAGGGGAGTGTACAGAGGAGCTGGAACAGGTGGAGCGGTGTATGCAGCCTGAGTGTCCTATGGACTGCATGGTGTCAGAGTGGACGGAGTGGTCCGAGTGTAATAAGTCCTGCGGCAAAGGCCACACCATCAGGACGCGCATGGTGAAGCTAGAGCCCCAGTTTGGAGGGGAGCCCTGCTCTGAGACGGTCCAGAGGAAGAAGTGTAAGATCAGGAAGTGCAAACGGGGCTCCAGGGCCAGCGAGGAGAAGAAGAGACGGCGGGGGGGAGAGGTGGGCGgcgggaaggagaagaggaggggaaaacAGCAAGGACGGGACGCAGCAGTGGAGGAACAGCCAGGTTGTAAGATGAAGCCCTGGTCCAGTTGGACGGACTGTTCCAAGTACTGCGGTGGGGGGATCCAGGAGCGCTTAATGGCTGTGAAGAAGAGAGCCAAGAGTGCCCCTGCACAGGTCACCAGCTGCAAGGACAGGAAGGAGATCCGTGCCTGTAATGTCCAGCCCTGCTAGGGGGCTCTGCTGTCTATCTGTGTTTATCTTTGTTAGGgctggggggaggaaggagaagcAGACTGTCAGTGTTGATTTAGCCTGGGTTGGCAGTCAGTGTGATGGATACAGCACCTGTGTGttggagggagatgagagattCTCCAGAGACTCCATTACTGTGGATCACTGGGCTGAGGACGAGACCAGCGTCAGTCATTAGTCTTATAGTAGCCTCCTCACTCAGCAGGCCAATGTATTACTATGTAACCAACACTATACAGTACACCACAACTTCACAATCACACACATGTTTTTTTACAATGTTGTTTTTGTCTTTATACTACAGTTGTATTGGCTTTACTAGCTAGCACTGGTAACACTCTTTCACTCTTGCATGTCTAACATTTCTCAGTCAGAAGACTTCACTGGTAGTGACCCTAGACTTCAAAATGTGGCCAAACGATGATGATAAAGGGCACTTGCAGATCTTAGAAAGAGACACTTCAGTCCAGGCCTCCAGTCTAGGGCATCAAAAGGAATTTGCATTTGGCATTTTTCCTGCCCCCAATTTCTTTATCCGCATCAGAGAGTTGAGTTTCACTCCAGCATTCATGTATCATTAAGGCAGGTCTCCAAACTTCACTGTCCGGTTGATTTGAGCATTGTAATCCTGCTGGTTGAACcacaatactccatacaggtTGTACAAGGTAGCTCCGTATACACAGTAAGACTTTTTTGGAAAATCAGTGTTGATTGttttgaaacattattgaatgaAAATACCAACCAAGTAATTTATAGAAAATATTTTATCCCGTGCTTAGTTTGTTAATTTGACAATTATATTCCAAGACAAAGCACAGGTGAACAATCATTCCAATTTTTGTATGCCTcaatacattattattttcaagACACGAATCTATTGTGACTTTTTATTCCATTGTAAGACATGTAGAGTCTTAAACACGCCTCGTTGAGTGTGCATAATtacatattttgtttattttgttgttgtattttgatAAGAATGTGAGACAAGACTCTTTCCAAAGTCATATGTAGATGTTCTCTCTGTCATTTTATcagtcctctctctttcttcttttgCCTCTACAACATATTACTATTTTGGAATAAATCACCTTTACCATAAAAGTAAACGTGATAAATCA

Function

NR:

description
LOW QUALITY PROTEIN: spondin-1-like

GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958296.1 False 3508 mRNA 0.51 16 87565328 87688247
XM_036958288.1 True 4014 mRNA 0.51 16 87565328 87689612

Neighbor

gene id symbol gene type direction distance location
syt9b LOC106561481 coding downstream 21583 87518920 ~ 87543745 (-)
olfml1 LOC106561482 coding downstream 68583 87492601 ~ 87496745 (-)
ppfibp2b LOC100380737 coding downstream 72744 87366163 ~ 87492584 (-)
LOC110498882 NA coding downstream 199029 87364250 ~ 87366299 (-)
mical2b LOC106573205 coding downstream 305725 87170110 ~ 87259603 (-)
kiaa1549la kiaa1549l coding upstream 112450 87802062 ~ 87854859 (-)
LOC110498926 hipk3 coding upstream 169745 87859357 ~ 87900425 (-)
LOC110498933 depdc7 coding upstream 217887 87907499 ~ 87911415 (-)
dnajc24 dnajc24 coding upstream 495416 88185028 ~ 88205473 (-)
LOC110499068 LOC106561495 coding upstream 879739 88569351 ~ 88574203 (-)
G199006 NA non-coding downstream 13445 87551655 ~ 87551883 (-)
G199005 NA non-coding downstream 16535 87548572 ~ 87548793 (-)
G199004 NA non-coding downstream 16990 87548116 ~ 87548338 (-)
G198974 NA non-coding downstream 65048 87499554 ~ 87500280 (-)
G198975 NA non-coding downstream 66738 87497115 ~ 87498590 (-)
G199086 NA non-coding upstream 8692 87698304 ~ 87698579 (-)
G199092 NA non-coding upstream 15256 87704868 ~ 87705091 (-)
G199093 NA non-coding upstream 15999 87705611 ~ 87705989 (-)
G199267 NA non-coding upstream 31448 87721060 ~ 87721568 (-)
G199329 NA non-coding upstream 138568 87828180 ~ 87831241 (-)
G198912 NA other downstream 238859 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 661372 86903036 ~ 86903956 (-)
G197554 NA other downstream 1601663 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1721835 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2925572 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 1917225 89606837 ~ 89609890 (-)
G202279 NA other upstream 2687945 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 3899600 91589212 ~ 91591049 (-)
G204024 NA other upstream 4097575 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 4708448 92398054 ~ 92443838 (-)

Expression


Co-expression Network