LOC110498933 (depdc7)


Basic Information

Item Value
gene id LOC110498933
gene name depdc7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87907499 ~ 87911415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575668.2
CCTTGACAAAACAATCCATGCTGGTTAGTTCTACTATTCACTACATACCACTATTTTAAATCGAAATGAGTAGCCAACTTTTTTGTTACATTCGCTCAATTGATCAAGTTCAATTGATGTAATCAGCAGGGATAATGTCTACTGCGTTCGTATACTATTCTACTTATTATTCTACTGCGTCTTTAACAGCTAATTAAGGTTTCCCTTGCTCACCTGAGGAATGAATAAAAGGGTAACGTTTTGGACAGaacgtttttttcttcttcattacGTCACCACCATCCTTACCAATTGAGGAATGGCCACAGTAAAGGAGAGAGCTGCCGCGCTGAATTTGTCTGGAAAGTTGGGTCTGCGTTCTCCAGGTCATGGCATGGTCCATAAGTCACTCCAGGCCTCTCCTATGTGGAGCAGCATCATTGCCAACCTCAAAATGTCTGTAAAGGTGAAGCGTAGGCGATTTCACCTGAAGTCGCATAATGACTGCTTTCTGGGGTCAGATGCAGTGTCTGTGGTGTTGGCCCATATAGTCCAGAACAAGTTCTTTGAAGGTGCTGACATCTCACGGGACAAGGTGGTGCGTGTTTGTCAGGCCCTCCTGGACTGTAAGGTGTTTGAGACAGTTGGAGCAAAGGTTTTTGGCAAAGATAAGAGGCAAGATGTTTTCCAGGACAGCAATGGTTACCTCTACAGGTTTCTGAACACACAAATGCCTTCTATGGATGAACTTGAAAAAGGAGTCCTTTCTCCTGGTATTCAAAGCACCTTTTGCAGTGCTTCTTGCAGGCAAGAGGAGCAACTCTATTCACATGGTACACCTCTGAGATCCAACCAACTGTTGGAAACTGTCCTGGGAAACCTGAGTCTGAGTCCAAGCAAAGCACACATTGATTCTCCATTACCACAGACCCTGGTTGATGAAGTGTTGCGTGAGGAAACGATGCTGAGACTGCTACAGCTGGTAGAGCTCCCTATGTTGGACAATCTGTTAGAAGGTGGAGAGACCTCTCCCCGTCGCATGGCACAGAGGGACCCAGACTTGATTTACACCAGCAACTACCTGGACCGTGAGATCCTGAGGGCCTTCAAGGACTCACAGGAGGATGATTGGCTTACAGCAGCATTGGACTGTCTGGAGTTCCTGCCTGACCAGCAGGTGGTGGAGGTGAGCCGTGATCTGCCCAGGTGTCCAGACGTGGTGGGTGTCGGCCAGGGTCAGCCCTGTTGTTCAGGCTCAGGCACCCAGCAGTGCAAACTTCTGCTGTATGAAACATTGGTGAAATACTATGGCCAGTCCGACCGTTCACCCCTGCTCGCCAACCACATGTCCGACATCTACACTGGGGTTACTGAATTACTAGTGAATGCAAAGTTTTATAAAGCTCTTGAGGCACTGCAGTTGTGTTTGAAGCTTCTGCACCCTCGTAAGCGGGAGGAACTGCGCACATTGTTGCGCTTCATGGCTATGGCTGCAGACCCGCTGGAAATCAAGCTGGACAAAGAGATTGAGAACAAAATGGTTGTGAAGATGGCTTTTTCCAGAGCCATCATCCACAGCAAATCTTTAGCCAAAGAGAAAGTGGACCTCCTGGTGCTGTTTATGCTGGACAACCTCCATTACATTTTTAAGATACCAGGATCTTTGCACAAGCTGGTCAGTGACAAACTTGCCAGAGTtgtgcaaggggaacaaccagATGTGACAGGGTACACGTTCTGTCAGCAAGTCTCAACAAAGGCTTATTCTGACTGTACTCAAAGAACAACACAAGAAGCGCTGTTGGTGTTACTGAGGAATATTAATGAAGACCCAAAGCACTCTGCCAAAGAGAGGAAACGGCTCCTCAGGCAATTTTACCAAGGCCACCCAGAAATATTTGTTCAGTATTTTGGAGATTCTGTGTCTGCTGTCAGTGTGTAGCCATTGTCAATGTTGTCAAAAGATCACTTTGTACATGTTTGTACATGCCTAGGTCACTTTGTATGCATGTGATTCTGAATTAAATTTAAATAAAGTCTTAATGGACACCATGGTA

Function

symbol description
depdc7 Predicted to be involved in intracellular signal transduction.

NR:

description
DEP domain-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575668.2 True 2036 mRNA 0.46 9 87907499 87911415

Neighbor

gene id symbol gene type direction distance location
LOC110498926 hipk3 coding downstream 7074 87859357 ~ 87900425 (-)
kiaa1549la kiaa1549l coding downstream 52640 87802062 ~ 87854859 (-)
LOC110498902 LOC106561484 coding downstream 217887 87565328 ~ 87689612 (-)
syt9b LOC106561481 coding downstream 363754 87518920 ~ 87543745 (-)
olfml1 LOC106561482 coding downstream 410754 87492601 ~ 87496745 (-)
dnajc24 dnajc24 coding upstream 273613 88185028 ~ 88205473 (-)
LOC110499068 LOC106561495 coding upstream 657936 88569351 ~ 88574203 (-)
LOC110499075 LOC106561496 coding upstream 719064 88630479 ~ 88656952 (-)
znf277 znf277 coding upstream 852143 88763558 ~ 88770972 (-)
LOC110533889 NA coding upstream 894673 88806088 ~ 88807501 (-)
G199329 NA non-coding downstream 76258 87828180 ~ 87831241 (-)
G199267 NA non-coding downstream 185931 87721060 ~ 87721568 (-)
G199093 NA non-coding downstream 201510 87705611 ~ 87705989 (-)
G199092 NA non-coding downstream 202408 87704868 ~ 87705091 (-)
G199086 NA non-coding downstream 208920 87698304 ~ 87698579 (-)
G199369 ccdc73 non-coding upstream 7712 87919127 ~ 87931620 (-)
G199378 NA non-coding upstream 22960 87934375 ~ 87934585 (-)
G199405 NA non-coding upstream 49814 87961229 ~ 87961440 (-)
G199406 NA non-coding upstream 50863 87962278 ~ 87963033 (-)
G199407 NA non-coding upstream 55258 87966673 ~ 87967599 (-)
G198912 NA other downstream 581030 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 1003543 86903036 ~ 86903956 (-)
G197554 NA other downstream 1943834 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 2064006 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 3267743 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 1695422 89606837 ~ 89609890 (-)
G202279 NA other upstream 2466142 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 3677797 91589212 ~ 91591049 (-)
G204024 NA other upstream 3875772 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 4486645 92398054 ~ 92443838 (-)

Expression


Co-expression Network