XLOC_002072


Basic Information

Item Value
gene id XLOC_002072
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20731614 ~ 20738676 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005875
TGATGGCAGTGTAAGCAGGTTGACCGTGTGAGGGCAGAAATCCTGTTGCTCCTCCATTTGCATTGAGCATTTTGACTGCATCAAGTGCGTCTGACAACTTAAAGATTTACACGGCAATCAGCATGAAATAAATTACTCCAGTGCTAAGATGGGATtgaaagggcatgcgctgcataaaaacatatgccagagtattTGGCGGTTCTTTCCACTTACTGTGGCGATCCCTGGTCTAATCTGAAGGAAAGTGACCTGTAACTGTGAActaattttaagttatttttgtgAAATGCTACTTTTCTGGAATTGCAGAACAACCACCTCATATACTGTAagtgttaaaatgtatttgtgttatatgggatttttttttttttgcaaaattagcATGTTTCCATTGGATGTATTCTAAATTTTCTGTTTCATGTTACACAGTTTAAAGGGTAATCGAAAAGTATTTGATCTCTTGTGATTTCTCTCTCCTCTGTGCTATTATATATCCTTAACACACTTCACATTCCCAcatattaaactattttattaaaaatgtaataaacatgtATTAAATGCTTCTAATGCACACAATGTCTCAAAATCCTGTCTGTAAGCAGCTCACTTGTTTTTGAGCACATATGCGAAAAGTAATGACACATGTGCACATCTCTTTCACATAccaacaaattaaatattaaacatacatTCATCAGAAGAGCAGGTCTTTCTTGGCAAGAGAGTAATCAAAATTGCACCAAGCAGTAGATGTTAGTCTGCCGAGGTTATTGACTGCCTCACGAGGTGTGTAGAAATGATGAAATGGTTCAATGTATGTAGCATTTCAACCATTTCAAGAGCAAAGTAATGACGCAGAGAACATATAAGGCACGCTCTGTGCAAGATCTGAACACCACGGTGAATAGAAACAGAAGAGTTGAATGAGCACTGGGCCGGACTTCCCACAATTACTCCCCATGGGGGCTGCTTGTACGGCAAAACAGCCTGTTAGTTTCTGAAGCACACTAGATTTTATTCCCCAGCCTGACTGCTGGTCTTCCATGGCTGCGAGATCCAACAGTTTACTCAATTTTCAACTTTTACACCAAAGCGTCGCTTCCCTCACTCAGGGAAATGCATGCTTCCTTCATTCAGCAGCGTAAAGAGGACAAAACGGCGACAAATTACAGAGAGGGACATTAACGCTGACGAACACAACATGACAAGAAAATGGTAGTAACTTGCGCCTCCCAGCTCTCTTTCTCGCCCAAAgagatttaaataataaaaaccgtCGGCCTGTGAACAAACAGGATAATTATGGCCTGCAGTCTTCCTGTCGCTGGTCAGGCACGGCAGAGCAGAAAGAAACACGTTATTACCACTCAAAGCTTTCTGCCAAGGAATTAGGCAACATCAATGTTTCATGTAGTCGCCCGGTTTGGAAAGAGACTGAAAAATCGACACATTTTGAccaggcttttctgtgtgctgtttttCTCCCACTGTGAAAGGAAACGTGGGGTCTGAAAATCCCAAATAGACTGGAGAAATTTTTGCACTTGTAAAGAGAGATTACGAGTTGGAGTAAATTGCATGTGAAACTGGCTTGGATTTGTACATGCAAAGCGCTTGAAGTTCACGGCGGGTAAAttgcaataaaagaaaaaaggcaAATATTGATGTCATGAAATTAAAGCAGTCATTCCATACTGTGGTGTGTCTAAGTAGAGAAaaactaaaattataataataaaaaaatgctttaaataaaaaaattaatcgaaACCTACAAATGCCATTTTTTAGAAGTATTTTACTTCAATAAAGCCTTTTTCTTCCTTTATTCTACCCGACAGATGTAATTAAAGTGGCTTTGAGCATCATAATCTATTTCACAACACAAACTTTTTTCCCTCTTAGGCTTTTAATAAGTTATACATTTAGAAAATCCAaatcttaaaataacatttactcacttttttatttatacaccTACAACGTCTCCAAAAATCCAAGCAAATAATTCTGTTCTGTTATTTCTGTCTGTTCTTCCCGccatcggtgaacagcgcttCTATTTCTAAAGCTGATCGCAggcctttctgttgagcaggggaagacaataaccaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005875 True 2124 lncRNA 0.38 3 20731614 20738676

Neighbor

gene id symbol gene type direction distance location
XLOC_002071 BX548043.1 coding upstream 47464 20684036 ~ 20684150 (+)
XLOC_002070 NA coding upstream 63753 20665016 ~ 20667861 (+)
XLOC_002069 NA coding upstream 86155 20643335 ~ 20645459 (+)
XLOC_002068 prnpb coding upstream 98835 20628698 ~ 20632779 (+)
XLOC_002067 letm2 coding upstream 104819 20589969 ~ 20626795 (+)
XLOC_002073 NA coding downstream 365245 21103921 ~ 21106710 (+)
XLOC_002074 NA coding downstream 440808 21179484 ~ 21208200 (+)
XLOC_002075 BX004886.1 coding downstream 497888 21236564 ~ 21236678 (+)
XLOC_002076 trpc7a coding downstream 656622 21395298 ~ 21428998 (+)
XLOC_002077 BX465186.1 coding downstream 658644 21397320 ~ 21404971 (+)
XLOC_002066 NA non-coding upstream 229436 20501776 ~ 20502178 (+)
XLOC_002065 NA non-coding upstream 278984 20448467 ~ 20452630 (+)
XLOC_002081 NA non-coding downstream 803845 21542521 ~ 21543562 (+)

Expression


Co-expression Network