LOC110499106 (LOC106561497)


Basic Information

Item Value
gene id LOC110499106
gene name LOC106561497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88623369 ~ 88630357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576018.2
ACTATTTTCTTTCGTCATCATTCTACGACAGGCTTGCCAGCACACAAAAACCACAACACagacactcaaacaaaataaacgTTGCTGATTGCATGTGGTTTGCGAAATATCGATGTTGACACGTAGCAATACCAGGCCCCCCTGCACCGTCTTCTCATAGTGCTTTTGTGTGAGCGCGGTCGGGATGGGCCAGCAGATCTCAGGCCAGGCGGTGATGACCAGTCTACCTGAGAAGCTGATGAAACACGCCAGGCTGGTAACAGACAGCGGTTACCTCAACTACGAGGAGTTCCTGGGCAGGGTGGCAGAGCTCAATGACATGACAGCTAAGCTTGCAGCTGGACAGCAAAAACACCTGCTCTTTGAAGTCCAGACTGGCTCGGACGCCTCTGCTCTGTGGAAAGTGGCTGTGAGGATAGTTTGTACCAAGATCAACAAAGAGAATGGGATGGTGGAGGCGTCTCGCATCATGAACCTGTACCAGTTCATTCAGCTGTACCGTGACATTACCAGCCAGGCAGCAGAGGTGCTGTCAGCAGAGGGCGCCAGGCTCCCGTCTGGAAACCTCCCATCAGGGGACTCCTGTCAGGCCAGCATGTGGATGGGCAGGGTAAAGCAGTTGACTGATGAGGAAGAGTGCTGTATCTGCATGGATGGGAAATCTGACCTCATCCTGCCTTGTGCTCATAGCTTCTGTCAGAAGTGCATTGACAAGTGGAGTGGGCAGAGCAGGAATTGTCCGATATGCCGCTTGCAAGTGACCGCTGCTAATGAGTCGTGGGTGATGCCTGATGCCCCTACAGAGGAGGACATAGCTGGCTATATCCTCAACCTGGCTGATGAGGCAGGCCATCCACACAGACCTTAAACTGCTCAACACTAAGACACTTTGATAAACTAGTGACAGACAAACTGACATCGGGAATAGTTTGGGGTTTTTCCTGACTTGTGTAGGGCCTGTAGTTTTCCTCATCAGGAAAAAACCTTGGCCTAGTTTTGGGGTATGTAGATAGTCACATTTAGCAATTTTAACCACTGGTTCTATTTATTTTATGTTCTCTTTTTTACTTTTCCATATTTTTACATGATTGCTCTCCAAAGTGGATGTGTATATAAGATTTAAAGGTGTGTATATACACTTGGTGGCCAGCTTATTAGGTACACTACCCCATTCATGAAAATGGTTTGtttctacagacagtgagtcacgtggccgtaGCTTGccatataaagcaggcagacaggcatcgaggcattctgTTCGATTGAATGTTAGGATGTGCAAAACGACTGACCTATGCGACTTTACGCATGGTTTGCTCATCGGTGCCAGGCacgccggttccagtatctcagaggcccggcctcctgggctttccAGGCATGACAGAGTCTAGGGTTGATCAAGAATTGTGCGATAAACAACAAAACATCCATTTAGTCCTATGGtcaaaaacagctcgttgatgagaggtcgaaggagaatggcaagaatcttGCAAGCTAAAAGGCGGGCCACAAACGGGTAAATATTGACGCAGTACAACAATGGTGTGCAGAACAGCATCTCAGAACACACAACTCACTGgtccttgtcacagatgggctattACAGCaaacgaccacaccgggttccactcttatcagctaaaaacaagaagaattgGTTCCAGTGGGCACATGATGACCAatactggacaattgaggagtggaaaaacactgGCTGGTCCAACGAATCCTGGTTTGTGTTGCGTCATGCTGGTGGTAGAGTCAGGGTTTggcataagcagcatgagtctatggccccatcctgcctttTTTCAACAGTACAagctggtggtgtaatggtgtggggaatgctTTCCTGGCTCACTTTAGGTCCCTTAATATcaattgagcaacgtttccatgccctttaaaattcaggctgttctCGAGGCAAATGAGGGTCCGACCTGGTACTAGATGTGTACCTAATAAGTTGGCCACATTGTTTCCGTTCAGCTTGGTTATACCTACTCTTAGAATTGCGCTTTGAATCCTGGATAATAGTAGATGTTTTAGTATTAACTGTTATAGGCAGCTCTGTAACTGCTGTTGAACTTTGCATAAATCACTGTAGTCACATGAATACTTTAATTTTGAAATCCACACACTGTGGGAATGGTTTGTAATTTCATGAAATGTGAAAATAAGTACAATAATCTCATGGATGTTTTAGCCAGGATAAAGCTTTCTATTTTCTCTTTAATCAACATGTTAGGGTGAGATGATTTCTATCAACTATTTTGAGCTTTTAGTCTAAATGACTGTTTAACATAATTAAAACAAAACTTCTgcattattatttacaataattATTTATTATATCACTGATACCCAGGCAAGTGCATTGGATGTtataaataatgtactttttattaaGTGTGAGAGACTGAGTGAATGTTAAaagaatacatatatatatttttattcccATTAGATAACTAAAGATTGAAGCTGTTTTGTATATGCACTTTATTCACTGTTAGTTCAACAATGATTTAACATGTTTTAAAACAAATATTAGTCCACAGAACATTTTTAACCAAATCTGACAAAGTATTTTGGGTTTGTAATGTTGACCAATTGCACTTTTGAACACTTTTGTATTTCGCTGTGACAATCGTATTATTATTGTGCGTCTTTGAGTAAAGCTATATCCACCACAACATAATTGATGTCCTTTAGAAGTGTAGCAGGGCTCTACACTTACAAGATGAGGAACTTTGCCTGAGGACTTGTGTTAGCAACCAGAGCTAACaactaggctttagctcagtgggctaacgcAGTCTTCAGTTACATCAATATCCTGTGTTCAACCTGGTTGTTTACAGAAGCGCACAGCCTAGTAATTTTATGAAAGACAAACTGCATTTAGCATTTGAGTGCAATGTTCTATGGTGGCCTATAGGTGGTAGCATGTACTCTGTAACTGCACCTGTAGTTGGCTGGAGTACTTTAGAAGGACTAATTCAGGATGTTTAGGACGCAACTTGATAGTTAACTATGATTATGGTCTTTTCTTGTTAATTGATAAACTGAACTGTCTCTGAACATTCAACATTCATAAACCAACAACAGGCTAATAAAGAG

Function

NR:

description
RING finger protein 141-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576018.2 True 3138 mRNA 0.43 6 88623369 88630357

Neighbor

gene id symbol gene type direction distance location
LOC110499041 LOC106561493 coding upstream 56304 88398637 ~ 88567065 (+)
mpped2 mppd2 coding upstream 233874 88363311 ~ 88389495 (+)
LOC110498955 LOC105030318 coding upstream 552474 88050098 ~ 88070895 (+)
wt-t1b wt1 coding upstream 657092 87946473 ~ 87966277 (+)
LOC110498941 ccdc73 coding upstream 691730 87912532 ~ 87931639 (+)
LOC110499113 LOC106561499 coding downstream 31556 88661913 ~ 88667515 (+)
LOC110499119 LOC106573246 coding downstream 61070 88691427 ~ 88726701 (+)
bmt2 bmt2 coding downstream 108538 88738895 ~ 88750469 (+)
tmem168b LOC106561512 coding downstream 120411 88750768 ~ 88758734 (+)
LOC110502274 immp2l coding downstream 185446 88815803 ~ 88980439 (+)
G200146 NA non-coding upstream 16324 88606630 ~ 88607045 (+)
G200117 NA non-coding upstream 37465 88585661 ~ 88585904 (+)
G199891 NA non-coding upstream 148663 88474496 ~ 88474706 (+)
G199883 NA non-coding upstream 149336 88462591 ~ 88474033 (+)
G199871 NA non-coding upstream 192760 88430295 ~ 88430609 (+)
G200162 NA non-coding downstream 127 88630484 ~ 88632486 (+)
G200218 NA non-coding downstream 99015 88729372 ~ 88729663 (+)
G200219 NA non-coding downstream 99869 88730226 ~ 88730445 (+)
G200331 NA non-coding downstream 148607 88778964 ~ 88781586 (+)
G200335 NA non-coding downstream 153905 88784262 ~ 88784585 (+)
G199223 hipk3 other upstream 755402 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1086441 87535936 ~ 87536928 (+)
G198784 NA other upstream 1126634 87493623 ~ 87496735 (+)
G198575 NA other upstream 1472879 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 1584133 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 789412 89395057 ~ 89422438 (+)
G202039 NA other downstream 1816761 90447118 ~ 90447573 (+)
G202185 NA other downstream 2086585 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2606668 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2735980 91366282 ~ 91543765 (+)

Expression


Co-expression Network