LOC110499113 (LOC106561499)


Basic Information

Item Value
gene id LOC110499113
gene name LOC106561499
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88661913 ~ 88667515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576031.2
AGTGTTGCTGAAAGAAAATGTACGACATTTTTGACTTGTGTTAGCAGCAGTATTTTGACTTGTGTTTGCAGCAGTTTTGTGAAAATTTACGAAATGTCGTGACCAGGAAGTACTTTTTTAGTGTTGCTGACGAGACGCTGATTTTTGTGCCGTTGTTTTTGTCCAAAAACGAACATAGCGAAAGACAGAAAATTAGACTGCACCCCTTCCCTCCGTCCATCAAGATGGATAACTTGATTAATGAACACCAAAGCCGCAATGATCCAGAGAacaaggcaaataacactgattCACCTGAAATAAAGATTGAAATAGATGAGGTGCGCATTGAGTACACTCAACAGATGAACACACTGGAAGAAGAGAATCTAAGTGATCAGCCAGCAAACCAAGCAGACAGTTCTGATTTATCACAGGAGGATTCTGAGTCTGATTCAGAGTCTTtctcttgtacacagtgtgacaAGAGCTTCCGTACCGCCTTACATTTGAAAAAACACCAGATTAGGCACACTGATAAAACCCTACACTATTGCATAACTTGTGAGAAGAGCTTCCCTTATGCATCGCTCTTAAAGCAGCACCTAACAATGCATGATGCTGACAGAACATACTGTTGCACGAAATGCGAAAAGAGCTTCCGATCTGCACCGTGCCTAAGGAAGCACCTGACAACGCACGGTGAGAAGAATCACGGTTGCACCGAGTGCGATAGGAAATTCTGTTCAGCATCTCGcttaaaaaggcacatgacgacACATAGCGGGGAAAGACCACATGTTTGCACCgcctgtgggaagagttttacccGACCAGAGAGCTTAAAGAATCATCAGCTAAATCACCAAGGGGAGAAGCTGCACACCTGCCACAACTGTGGAAAGAGCTACAGTGTGCTGAAGTTCCTTAAAGAACATATGAAAGTCCACGAGGGTCCCCACATctgctctcagtgtgggaagagctacACACTCCTCTACAACTTGAAAATGCATATGTCAGCAGCGCATGGAGAGGAAAAAGCATTGCCTTGCTCTGAATGTGGGAAAAGTTTTGTTTCAGAGTACCGCCTGCGAAAGCATCAGAAGCAAGTACACAGAACAGCCTTCCCCTGCCCTGAATGTGGGCGAAGCTTCTCCACACTGTCCATATTGCAAGAGCATCAGTCAAACCATACTGGTATCAAACCGCATTCTTGTGAggagtgtgggaagagctttggccttctggatggtcttcagaggcACCAGTACACACACCGGCCCAAACCAGAAAAATCCTGCCTCTGTGAGGAGTGTGGAAAAAGCTTTCTTAACCTCACCCAACTGGCCAGACATAAACAAGTTCATTCCAATGTTAAATCCCACACTTGTGAGGAGTGTGGTAAAAAATTCAAACAGATCGGAGGTTTGAGAATACACCGCCGCACTCACACAGGGGAGACACCGTTCTCTTGCAAAGAGTGCAGTAAAACATTTACGCAGGCCAGCTCCTTGAAGGTTCATATGTTAACCCACACAGGAGAGAGGTCATTCTCTTGTAAGGAGTGTGGCAAGACATTCAACATTGCAAAGACATTACGGCTTCATATGcgcattcacacaggagagaaaccacaTAAATGCCCTGATTGTGGGAAGGGATACCATCACGCTCAAGGACTCAGAATGCACCTGCTATTTCACAAGGGGGAACGACGGCACACATGTACTTACTGTGACAAGAGTTTCTTTCTGCCAGGACATTTAAGAGCACACATCCGactacacactggagagaaaccttacctCTGCTCTaattgtgggaagagtttcaatCGGGCTTGGAATTTAAAGCAACACAAGAAAATATGTCAGTGATTCATTTCACCACAAACTGAACTTTCCACAGCATGTTATTGTGGGGCTCCTTTTTTGTAATATTCTGCCTATGATACATTGTGCTCTATGCCAAACTAGTCTAATAATACATCAAATAAAGTTGGTGACTTATTTACATTTGCTTTATCCATTTATAatctgtatgttgttgtggcaACAAAGTAGATGACATGCTCTATGTAGCCTACTTTGGCTGAGCCATATTGTGTGATGGGGATACTTGTACTGTATGACAAACTTTCAGTGAAGAATGATTGATTTGAATGTAAACATGTGGTGTCCAAAATGAACCCTAGAGGGTAGAACTAACCCAAGGATCTGGATATTATCATATCACTCTAGCAGAGAAACCTCCAGCTTTATTCAATGCCTTGATATGTACATTCTCAAAATCTACTTAGAAAGAATATACAGCTACGTTATTTCTGTCAATatgctatactgtatatacactcagtggccagctTATTAGGAACACCCATCTAGTATCGCGTcagacccccctttgcctccagaataTAATTCTTCAGGCATGaaatgttgctcaattggtatcaagggacctaacgtgtgccagaaaacattccccacaccattacaccaccgccaccagcctgtaccattgacaccaggcaggatggggccatggactcatgttGCTTACGCCAAATTCTGACTCTGCCATcacatgacgcaacaggaaccaggattcgtcggaccaggcaacttttttccactcctcaattgtccagtgttggtgatcatgtgcccactggagccggttcttcttgtttttagctgataagagtggaacccggtgtggtcgtctgctgtaatagcccatccgtgacaaggaccaaAGAGTTGTGCGTTCACAagatgccattctgcacaccactgttgtactgcgttgttatttgcctgtttgtgaccCACCTGTTAGCTTAcatgattcttgccattctccttcgacctcttaTCAATGAACTGTTTTCGTCCACAGAACTggcgctgactggatgttttttgtttgtcgcaccattctcggtaaaccctagacactgtcgtgcgtgagAAGCAcgtgtttctgagatactggaaccggcacGCCTGGCACCGACAATCATACCACGTTCAAAGctgcttaggtcactcgttttgcccattataacgttcaattgaacagtaactgaatgcctcgatgcctgtctgccagCTTTATATAGCAGGCCacttgactcactgtctgtaggagcaaaccATTTTTGTTGGTGTACCTAATATACTGGCCTCTTCGTGTATATTGCTTTGTAAAATAAGAAGAAAATAATCCTGAATATGCCTTGTATAATCTCGAACATCCCTCTGTAGCATGGCTTAAACTAGCCATTTTCACTGTTTATTTCTACCATTTGAATACATGTATTCCAAAAAAAATGACTGCTCTGTGTTATTTTTCTTTGCTGCAACTGTATTAGTATTTAGAGACAATGCACTAGTAGAGGCCACACTATGAGTTACATTTCTATGTTTGAATCATATCCACTTCACACAGGACATGGCTAACATAACGGAGAGAACATCAGTGTATTCAATGTTTCTAAGGTAAACCCCTGTCTtgtactgttctactgtacaccCAGGCAAGGTGGGCATACCTCAGTAACTAGTctgtgttccatgtctatgtccAGGTAAATTCCTCCCTTTTACTGTACTGCACTTCGGGTATCAATCAGAGGGAGACGGGAATGTGTCCGCTTTGAATGAAATCTAATCCTCCTTCACTTACATCCTCTGGGTCTGCGTTTTggcctgctctctctgtgtggtgctCAGTGCACTGTGCACTTACAGGCTGAGACTCAGTGTCATTACCGCTCTAATCACATTCGGGCTCCGGAGCAGGTAGGCACTAATTTCTGGAAGCATACAGGGAAGACTGTTTGTACTGTGCTACTTTTGTGTTATGAGAAAGTGTTGCTGCTCTGATCTTGTGATATGGTCTGTAAACAGCTTTGAATGGAACATGTTCGCTTTTTTTGTTCTTCAATTCTTCTTCAATTGATTCTGCAGCACATTTGTTGGAAGATGCGCCAACAGCAAGGAGAAGATCGTTGCTGGTGTTTCTCCCATCTAAAGTACAGAGGTCATCTTCTGCTTTAATGCAATTAGTGATAACTTGATGCCAAGAAAATATGGTTTAAATACTTGGTTCACATCTCTCTGTCATTACAGTGTCAAGTATACTGTCCATTAACTTACATTATTGCCAACTCTGTCTAAGTTATAGATTATACTAAATGACTGATGTTCATTCAGGCAATGTGCAGCTACAGTATTTTGGTTAGCTTACTGTATATTCAATGCTAGCTATTGTTTTTCACCTGGTATTTGAGTTACTGTTTGTATTGGTTTCATGATGCAAGTCGAAGCTAAGCCTAGAGTAAATCCCCAAACAAGTATCTCTTGGGACCCATACATTCGCAATAAAGTTCATTCCTCCCTTGAGCTTTCACTTTAGTTTGGAAAAGTGCTATACGGCACTGTACATTCCAATGTTGTTTCTTGGGCGTATTATTTTGCTGTCATGCATTTACTTCTCCCATTGTGAATAGGCTATACGACCCACAATGTGAGAAAGGTAGCCCACACACACTTAGGAAGACGGTAAATTAGAGTCCCATCACCAGAATGATGGGAATATTTACTGATGAAGTGAATGGCTTCTGTGGTGTGTGTAAGCTTTGAATTCAAAAAGCATTGCCTAAACATGCCTTCTGTATGTAAACATTGTACGGTGGCTTGGGAACAgacaaatcaacgtttattggttgcatacacagtTGCAGACATAGCAGATGTTATACAGGgtcaatggaacggagtcaaacatgggGTTTCCAAATGTTTCATCTGTTTGATACTTtctatttattccattccagccattacaatgagcccatcttcctatagctcctcccaccatccTCCAATGGTATgtacaataaaaataaatactatGAATGAAATGTACAGATATTACAGTGAGCTTtcaagaatccagtatataaaCAGTAACAAAATGCAATGTACAGTTGTAAATATATTAAAATGAGTTATGAGAAGAATACAGTACATGAATACATAATGTGAAAAACAGTCAAAAATAAACGGTCCTGTGTTTGATGTCCTTATGTTCATGCGACAGCAgcttttcctgtgtgtgtgtttgtgagtattTGCGAATGCTTGTGTGGGAGTGTATCTGAGTACagacagggttgggtaggttacttgtAAATGTAATtagttacagttactagttaccttgTCCAAACTCAATAACGTaatgattactttcagttacttttggattcCTTTCCCCT

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF26.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576031.2 True 5269 mRNA 0.42 2 88661913 88667515

Neighbor

gene id symbol gene type direction distance location
LOC110499106 LOC106561497 coding upstream 31556 88623369 ~ 88630357 (+)
LOC110499041 LOC106561493 coding upstream 94848 88398637 ~ 88567065 (+)
mpped2 mppd2 coding upstream 272418 88363311 ~ 88389495 (+)
LOC110498955 LOC105030318 coding upstream 591018 88050098 ~ 88070895 (+)
wt-t1b wt1 coding upstream 695636 87946473 ~ 87966277 (+)
LOC110499119 LOC106573246 coding downstream 23912 88691427 ~ 88726701 (+)
bmt2 bmt2 coding downstream 71380 88738895 ~ 88750469 (+)
tmem168b LOC106561512 coding downstream 83253 88750768 ~ 88758734 (+)
LOC110502274 immp2l coding downstream 148288 88815803 ~ 88980439 (+)
tdrd12 tdrd12 coding downstream 465418 89132933 ~ 89162092 (+)
G200162 NA non-coding upstream 29427 88630484 ~ 88632486 (+)
G200146 NA non-coding upstream 54868 88606630 ~ 88607045 (+)
G200117 NA non-coding upstream 76009 88585661 ~ 88585904 (+)
G199891 NA non-coding upstream 187207 88474496 ~ 88474706 (+)
G199883 NA non-coding upstream 187880 88462591 ~ 88474033 (+)
G200218 NA non-coding downstream 61857 88729372 ~ 88729663 (+)
G200219 NA non-coding downstream 62711 88730226 ~ 88730445 (+)
G200331 NA non-coding downstream 111449 88778964 ~ 88781586 (+)
G200335 NA non-coding downstream 116747 88784262 ~ 88784585 (+)
G200351 NA non-coding downstream 140330 88807845 ~ 88808071 (+)
G199223 hipk3 other upstream 793946 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1124985 87535936 ~ 87536928 (+)
G198784 NA other upstream 1165178 87493623 ~ 87496735 (+)
G198575 NA other upstream 1511423 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 1622677 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 752254 89395057 ~ 89422438 (+)
G202039 NA other downstream 1779603 90447118 ~ 90447573 (+)
G202185 NA other downstream 2049427 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2569510 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2698822 91366282 ~ 91543765 (+)

Expression


Co-expression Network