LOC110499119 (LOC106573246)


Basic Information

Item Value
gene id LOC110499119
gene name LOC106573246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88691427 ~ 88726701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958483.1
TACGTTTGAACGTTCTCTCAATGTGAACATAATGAGATGCTGTCAACATGATCCTTCTGCTCCAAATGATGTGCCACATTTCAGATAGCCCACAGGTAATGATTTATCTATTATGTAATTGGTCGTCAAGCTATACAAGTTAGTTGATGAGCATTTGTAGCTGCTGGTTATAGGACTTCACTGGATTTATCGAATAGACTCTTTGGCGAGTTACACCCTGTGCGCATGCTTGAGGCGAGGGGGACAGAACAATTACTCAATTTTCTCAGTGGTGATTTGAGGAGTAGCGGGACAAGAAACGCGTGAGGGCAAAACCCTACCATAAGGAACCACACACAGTCTCGCGGAGAGGAAGCACACCAAAAATGTTGATAATTCAAATTGCGACCCTGCTATCCGCAGGGGCGTGCGTCCTTGCCCAGGTACCGGAGTTCAGCGATGTGTGCACAGAGGGGAGCTGCTACCCCGCCACCGGAGACCTTCTCATCGGCAGAGCCCACCAACTCTCCTCCAACTCCACATGCGGCCTCCACCGGCCCGAGCCGTTCTGTATCGTCAGTCATTTACAGGAAGAGAAGAAATGCTTTGTGTGTGACTCCACCGACGTCTATGTCAAAAGCGTAGTTAACGCCACCACCGGCCACCGGGTGGAGAATGTCGTGACCACATTCGCCCCCAACCGCCTGAAAACCTGGTGGCAGTCAGAGAATGGTCTTGAGAAAGTGACCATCCAGCTGAACTTGGAGGCAGAGTTTCATTTCACCCACCTCATCATGACCTTCAAGACCTTCCGGCCTGCTGCCATGGTGATTGAGCGGTCGGCCGACTTTGGGAAGAACTGGCAGGTGTACCGCTACTTCGCCTACGACTGTGAGTCAGCATTCCCTGCCATATCCTCGGGGCCCATGCAGAAAGTGGATGACGTCATCTGTGATTCACATTACTCCGACATCGAACCATCgacagagggagagGTCATCTTCCGAGTTTTGGATCCAGTTTTCCGTATTGAAGATCCCTACAGCCCCAGAATCCAAAACATGTTGAAGATCACCAACCTAAGGGTGAAGTTCACCAAGCTGCACACACTGGGAGACAACCTGTTGGACTCCCGCATGGAGATCAAGGAGAAGTACTACTACGCTGTCTACGACTTGGTGGTACGGGGTAACTGCTTCTGCTACGGACATGCCTCAGAGTGCGCGCCCGTCGATGGGTCTGGGGATGTTGTTGAGGGAATGGTCCATGGCCACTGTATGTGCAACCACAACACCATGGGGCTGAACTGTGAGAAATGTCAGGACTTCTACCATGACCTGCCATGGAGACCAGCCGAGGGACGCAATACCAACGCCTGTAAAAAATGTAACTGTAACCAGCACTCAGACTCGTGTCACTTCGACATGGCAGTATACGTCTCCACGGGTAACGTGAGCGGTGGTGTGTGTAATGAGTGCCAGCACAACACTATGGGACACAACTGTGAACAGTGCAAACCCTTCTACTTCCAGCACCCAGAGAGGGACATCCGTCACCCCAGTATCTGTGAACCGTGTAACTGTGATCCGGTGGGCTCTCTGAACGGTGGGATCTGTGACAGGATGACTGATGTGTCGTCTGGACTGATCGCTGGCCAGTGTCGCTGCAAGCCCAATGTGGAGGGAGAGCAATGTGACCAGTGCAAACAGGCCCACTACGGCTTGGGAGACCACCTTCTGGGCTGCATGGCCTGCACCTGTAATGGCCTGGGGACAGTTCCTGGAGGGAGCCCATGTGATACAGACTCAGGAGTCTGTTACTGCAAACGCCTGGTCACCGGGAGGGACTGTGACCAATGTATGCCTCAGCACTGGGGGCTAAGCAATGACATGGATGGCTGCAGACCATGTGACTGTGACCTGGGTGGAGCCATCAATAACGAttGTTCCCAGGAgactggtcagtgtgtgtgtcgagAACACATGTTTGGCCGGCGCTGTGACCAGGTGGAGTCAGGCTTCTACTTCATCGCCCTGGACCACTACACCTACGAGGCAGAGGACGCAAAATTTGGACCTggTGTGACAGTAGTGCAGAGACCCCACCCTCAGGACCGTAGCCCCACCTGGACAGGGATAGGTTTCGTCAATGTTCCCGAGGGGGCCTACCTGGAGTTCTCCATTGACAACATCCCCCACTCCATGGAGTACGACATCCTCATCCGCTACGAGCCTCAGTTACCAGACCAGTGGGAGGAGGTGTTGATGACGGTGATGCGGCCCAGTGTGATTTCAGCTGACAGTCGCTGTGCCAACACCATGCCTGACGACGACAACCAGATGATATCCCTCCACCCCGGATCACGATATGCAGTGCTCCCCAGACCAGTGTGTTTCGAGGCAGGGATGAACTACACTGTTCGTCTGAGTCTGCCCCTCTACTCCGCACTCAGTGACGTCCAGTCCCCATATACACTCATCGACTCGATTGTGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGGCTCTGAGGGCGGTGACTTGGCCACCAGCAGTGCCTGGGATACCTTCCTGCGCTACCGCTGTCTGGAGAACAGTCAGAGTGTCGTGAAGACCCCGTCCACAGACATCTGCCGCAACTTTATCTTCAGCGTATCCGCTCTGCTGCACCAGGGAGCTAAAGCATGCCAGTGTGACCCGCAGGGCTCTCTCAGCACGGTGTGTGATGCCAGCGGCGGGCAATGCCAGTGTCGCCCCAATGTAGTAGGCAGGAACTGTGACAAATGTTCCCCTGCCACCTACCTGTTTGGACCCAGTGGCTGCAGATCCTGTGATTGCAATCCCCAGGGATCGGAGCATGCATTCTGCCATGAGGCTACTGGCCAGTGTGCTTGTATCCACGGGGTGTACGGCCGTCAGTGTGACCACTGTTTGCCGGGACACTGGGGCTTCCCCAACTGTCGCCCCTGCACCTGCAATGGCCACACTGAGCAGTGTGACCCCTACTCTGGAGAATGCCTGGACTGCCGAGAACAGACCACCGGGCACAACTGTGAGAGGTGTCTGGAAGGTTACTACGGCGACCCTGTCCTGGGTTCAGGGGACCACTGTCGTCCCTGCATGTGTCCGGACGGGCCAGGTAGTGGGCGGCAGTTTGCCGGTGGATGTTACCACGGTCTGGACTCTCACTACCAGGTGTTTTGTATCTGCAACCCTGGATACAGAGGTGCCAGATGTGAGGAGTGTGCCCCAGGTTACTATGGAAATCCCCATGAGAACGGTGGGCAGTGCCAACCATGCCAgtgcaacaacaacattgacatgCTGGaccaggagtcctgtgatgccAGGACGGGTGAATGTCTCAAATGTCTCTACCACACTGAGGGTCGAGGCTGCCACAGCTGCAAGCTGGGTTACTATGGAGATGCCCTCACACAAAATTGCAGAAagtgtgtgtgtaaccaCCTGGGTACCAACCCAGCCACGTGCCCGGTAGTGGGTGACTGCCACTGTGATCTGGGCAGCGGGCAGTGCCAGTGTCTACCAAATGTGGTGGGTCAGCACTGTGACCAGTGTGCCCCCGACACCTGGAACATGGCCAGCAAGAGGGGCTGCGAATCTTGCGACTGTGACCCCAACCACTCATTTGGAACGTCCTGCAACGAGCTGAGTGGCCAGTGCTCCTGTAAACCTGGCTTTGGGGGTAAAATGTGTCAGGAGTGCCGAGAGCTGTTCTGGGGAGACCCTGAAGTCAAATGCAATGCATGCGACTGTGACCCACAAGGCATTGCCGAGCCGCAGTGCAACAAGGCCAATGGTCACTGTGTGTGCTTGGAGGGCGTGTCTGGTCCCCGCTGTAATCTCTGCGCCCGGGGCTCCTCTGGCACCTTCCCCTACTGCGAACGCTGCCACCAGTGCTTCGCCGACTGGGACGTGATCGTAGGTCAGCTGACCAACCAGACCCACAGGCTGGTCAACAAGGTGAACACCATTAAGGCCAGCGGCATCACCGGACCATACAAACACGCCATAGATAACATGGAGCAGAGCGCCAGGTCCATAAGAACTATCCTGGCCCAGAACCTGGCTACACAGCCACTGTCAGAGATACAGCAGCTACTGGAGCAAGCCACAGATCTAATGGAAGAGATGAGCAACAAGCTGAACCTCACTGAGGAGGCGTTGGCCCAAGTATCATCTGATGACAACAGCACCAACACCAAACTGGACTCTCTCAAAGAGGACGCCCAGAAACTGGATCGCACCGTCAAGGAGCTGCTGGACCAAGTGGAGCTCATCAAGAACTCTGATGTTCGGGGAGCGACAGACAGTGTCACAAAGTACTACCTGCAGTCTCTGGCTGCTGGGGCCCAGGCCAACGCCTCCACCACCGACCCAGGCAACCCGGTGGAGAGCTCTTTCGTTCTACGACAAGCTACGGAGGACAAGATGAACGACACCAGGGATGAGTTCCATAGGAGGCAGGAAGAACACTCCAAGAGACTGGACGACCTGGCGGATCAGCTGGAGACATTGGACCTATCAGAACTCAGCGAGAAGACGTGCGGCAGCCCAGCTGGTGAGGCGTGTGCAGACTCTCCGTGCGGGGGTCTGAGTTGTGTGGACTCTGAGGGGAACAGGAGGtgtgggggtgaggggtgtaACGGTCTGGTCACCCTGGCCAACAATGCCTGGCATAAGGCCAAGGACTTTGACCAGGAGATCCTCACGGCCATGGAGGAGGTGGACAAGCTCTCCAAGATGGTGTCAGAGGCCAAGGTGAAGGCAGACGAGGCCAAGCTGAGTGCCCAGGACGTGCTGCTGAAGACAAACGAGACCAAGCAGCGCGTGGACCAGAGCAATGAGGAGCTGCGCAGCCTCATCCGACAGATCAGAGACTTCCTCACACAGGATGCAGCAGACATGGAGAGCATCGAGGCAGTGGCCAACGAGGTGCTGGCCATGCAGATGCCCAGCACGCCAGCCCAGCTCCAGAATCTGACAGATGAGATCAGGGAGAGGGTGCGAGACCTGGCCCAAGTGGAGACTATCCTCAACCAGAGTGCTGACGACGTGCAGAGAGCCGAGAACCTACTGAAGCAGGCAGGCAGAGCCAGTAAAGAGGCCACAGATGTGAGGGAAACAGCAGAGATGGTGAAGCAGGCTCTGGAAGAGGCTGAGCGTGCCCAGAAAGCAGCAGCCGAGGCTATCAAACAGGCTACCACTGACATTAAAGGCACAAACGACCTCCTGTCCTCAGTGGAATCGGAGACAGCAGACTCAGAGTTCAAGCTGAACAACGCCACCCAGAGACTGCTGTGGTTAGAGAAGGACATCACACTGCTCAGAGAGAAGGCACAGAACACCTCTCTTAGCTCTGAACAAAccgagagagatgcagagagcaTCAACAAAGTTGCTGAGCAGGTCAAAAAGgatCTGGAGTCGGAGCTGAAGGATAAGTACAGCACCGTGCAGGACCTGATCAAACAGGAGGCCGGGGGCGTGGCCGACGCCAAGAAGAGGGCGGAGCTTCTACAGCAGGAAGCCACAGACCTTCTGCTACAGGCCAGTGACAAATTACAGCTACTGAAAgATTTAGAGAAGTCCTACGAGGACAACCAGAAGACTCTGGAAGACAAGGCCAACCAGTTGGTGGATCTGGAGAAGGCTGTGAAAGAGCTGCTGCAGGAGATCAGTCACAAAGTCACTGTGTACAGCACCTGTCTGTTTTAAACACAACCCCCAGTACGGGGTTGTGAAAACTGGTTCACATAGCAAAATGAACACCAACCAAGGAATAGAGGCCATTTGAAACCAGAAGATATTTAATATTACTGGCACAGAGCCCCTAGAGACTGAACACATTAAACGTACCACCCACTCACACTCCCTGGTATCATCATTTGAAATCAAAGATTACTGTTTACTTTTATACTGTTTCTAAGTCCAACAAGTGGTATTCGTGTGGGAAAAGCAGGGGATAAAAAATAAGTAATCTGTTTCTATTTGTAGGAAACAAGGAGAGCGAATAAGTGAAAATCTGAATCCTGCCAAAGAGTTTACCATCCAAGCTACAGCCAGCATTTAAGATACACAGTACCAGCTAGACATCATCGCCTACATATACAACGTGACATGAACCAGCCAGACTTTACAACTACCTTGTTTGGCAGTACTTCTAGCACACAGTATGTGTGCGAATGTTATGGTTCTAATTTTTGAGAATGAGAGCGTTGAGGCGAATTTCTGCGTACAGATATTTGGAATACGAAAAAGACCATcctcaaaacattttaaaataaaaaggaaaatgtGCATTGTTTTGAAATGGTTGCAAAGAAATTCCCTCTCCATTTAAACCAGAATGTAATTCAATTATTTTCTTGAGCTTGAAAACCACTGTCTTGAAGGCTGAAAGCATGAATGTAAAGGTTTgacttaacttttttttttttacctgagactggattattttgtatatttgtatGCAACATTGTATGAACCAACTGGTTACTTTCAAAGTTACCTTGACCAAAAACTTGATCAACAAATGTATTTTCAATTTGGAGGGAAAAAAACATTGCATTTGAAATCCCATCAAATCTGTGTTACATCTTGACAAGTTCTGAGAGTTATTGTTTTTAAACATATTTACTATTTTGAGCCTTAGCCTCTCACCTTAACACTATAGTGTACCTGTTATGGTAAAATGGGGAAGTGTTTGTGGAGCCTCAGAGTGCTCCTGGGAGGCAGCCACATACAGAGCAGACCTTCTGTGTACACTAAGCATTAGATCCAATGCCTTGGCTAGATCTGAAACACAAGAGACATTAAGCTACTCACAATTCTGTTTTTATCCTTGATTTATTCTCTTATATTTTGTTGTATAGTGTCCTTGTTATTTTATATTTAACAGGCGCTTTAAAACCAATGTATTACAATTATTAGTGCTAGCATAGGGCAATTGTGACAGGACTCTTCATAAATTCTCCCAATATGCCACAAATTTCAATGAAATGCAATCATCCCTTCTTTCCTGGAATAAATCAGGTCTGATATGTTTGAA

Function

NR:

description
laminin subunit beta-1-like

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
K05636 LAMB1; laminin, beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958483.1 True 7056 mRNA 0.52 33 88691427 88726701

Neighbor

gene id symbol gene type direction distance location
LOC110499113 LOC106561499 coding upstream 23912 88661913 ~ 88667515 (+)
LOC110499106 LOC106561497 coding upstream 61070 88623369 ~ 88630357 (+)
LOC110499041 LOC106561493 coding upstream 124362 88398637 ~ 88567065 (+)
mpped2 mppd2 coding upstream 301932 88363311 ~ 88389495 (+)
LOC110498955 LOC105030318 coding upstream 620532 88050098 ~ 88070895 (+)
bmt2 bmt2 coding downstream 12194 88738895 ~ 88750469 (+)
tmem168b LOC106561512 coding downstream 24067 88750768 ~ 88758734 (+)
LOC110502274 immp2l coding downstream 89102 88815803 ~ 88980439 (+)
tdrd12 tdrd12 coding downstream 406232 89132933 ~ 89162092 (+)
ankrd27 ankrd27 coding downstream 441613 89168314 ~ 89202963 (+)
G200162 NA non-coding upstream 58941 88630484 ~ 88632486 (+)
G200146 NA non-coding upstream 84382 88606630 ~ 88607045 (+)
G200117 NA non-coding upstream 105523 88585661 ~ 88585904 (+)
G199891 NA non-coding upstream 216721 88474496 ~ 88474706 (+)
G199883 NA non-coding upstream 217394 88462591 ~ 88474033 (+)
G200218 NA non-coding downstream 2671 88729372 ~ 88729663 (+)
G200219 NA non-coding downstream 3525 88730226 ~ 88730445 (+)
G200331 NA non-coding downstream 52263 88778964 ~ 88781586 (+)
G200335 NA non-coding downstream 57561 88784262 ~ 88784585 (+)
G200351 NA non-coding downstream 81144 88807845 ~ 88808071 (+)
G199223 hipk3 other upstream 823460 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1154499 87535936 ~ 87536928 (+)
G198784 NA other upstream 1194692 87493623 ~ 87496735 (+)
G198575 NA other upstream 1540937 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 1652191 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 693068 89395057 ~ 89422438 (+)
G202039 NA other downstream 1720417 90447118 ~ 90447573 (+)
G202185 NA other downstream 1990241 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2510324 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2639636 91366282 ~ 91543765 (+)

Expression


Co-expression Network