Fish Transcriptome and Expression Database

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model fish

XLOC_020721

Basic Information

Item	Value
gene id	XLOC_020721
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007133.7
NCBI id	CM002906.2
chromosome length	39133080
location	2266206 ~ 2348036 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042280
tctcttgtcgcagtgtgaacactggtacggtttctctccagtgtggatcctcatgtgaatctcgAGGTGGCATTTACGATCAAAACtccttccacactgagtgcagatcAAACTTTTTACAGCTgttcttttcattaaaatattgtgtTCAGTGCTTGCGGGAGTTTCATCTTCACTTCTGACatgatgtttctcctcatcttcactctcctccttca

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00042280	True	218	lncRNA	0.43	2	2266206	2348036

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_020719	NA	coding	downstream	6654	2253538 ~ 2259552 (-)
XLOC_020717	NA	coding	downstream	37954	2224761 ~ 2228252 (-)
XLOC_020711	NA	coding	downstream	42219	2061685 ~ 2223987 (-)
XLOC_020714	NA	coding	downstream	92865	2124609 ~ 2173341 (-)
XLOC_020713	NA	coding	downstream	141054	2096780 ~ 2125152 (-)
XLOC_020722	NA	coding	upstream	118237	2466273 ~ 2482489 (-)
XLOC_020723	NA	coding	upstream	118303	2466339 ~ 2496857 (-)
XLOC_020724	NA	coding	upstream	123228	2471264 ~ 2524501 (-)
XLOC_020725	NA	coding	upstream	172896	2520932 ~ 2539642 (-)
XLOC_020726	NA	coding	upstream	180747	2528783 ~ 2538625 (-)

Expression

Co-expression Network