LOC110499152 (lrrn3)


Basic Information

Item Value
gene id LOC110499152
gene name lrrn3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88959372 ~ 88971921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576110.2
cctctgcctctgcctctgcctctctctctctgcctctctcacacacacagtggaatGGTTTTAGAGTTGGAgctacccatctctccctccctctcctgttttgcgctctctctctctgcctctctagcGACGAAAGGAGAAGAAGACGCATGTTCTTGGAAATACACATGAAAAACCTGCTGTGATCTGAGTCTCACACTGTCATGCTGGACTACTGCTCTAAAGCATGTGGGTTCCAGGCATGAGGGTGTGTGTGAAGGGACTCACTTCCACTGATGGAAATTGACACGATGAGTGACTGTGATTGAGGATAATAATGATGGAAGACAGAGTGATCCATCCCCAGCCCAAGCCTGAGCGTTCCTCCTCAACCCTCCCTGTTCTTCACCGACAGACTTCCTGAAGGATACATTGACCTTCACACATCCAACTTGCCTGACAACCTGGCACAGTGTAAATTGAAGAAAGGTTGCTCCTTTACTCTCTGCCAAGGACTAGACAACGACTACAAAAATGCCAAAGCTTTAGGGACCAGGCATCAGCAGAAATCTGTTCTGTCTCACTGCGGTAACAAATGAGCCTTTATTTGTGAAGTTAACAGTGCTAACAGCTGACTCCATAAGGACCCATTTCTAGTTCAAGGTAATAGGGGGCCAAGATGAAGAAGACTGCGTTTTTGGCTTGTTTGTTAGCGGAGCTAGCTCTGACAGCTTTTGTTCTGGCCTCGGAGGGGGGCGCTGCTCATTGTCCTGCATTGTGCCGGTGTGAGATACGACCCTGGTTCTCTCCAAGTTCTATTTATACAGAGGCTCCCACGGTGGACTGTAATGACTTAGGCCTATCGTCAATGCCAGAGACACTGCCCTCAGACACACAGGTGCTATTGTTACAGACCAACAATATCATCAGTGTTGAGAAACCTTTGGATTACCTGGCTAATATCACTGAGATAGATTTATCCCAGAATAACATATCCTCTGTGAGCGATGTCCATCTGGGTCCTCTTACCCAGCTGCTGTCACTGCACATGGAGGAGAACTGGGTTCAGGCCCTGTCAGACAACTGTCTCCCATCCCTGCCCAACCTCCAGGAGTTCTACATCAACCACAACCTGATCTCATCCATCAGTCCTGGTGCCTTTAGAGGGCTAGGGAGGCTCCTGCGGCTCCATCTCAACTCCAACTACCTCAGGGGCATCAACAGGGTGTGGTTTCAGCCTCTACCCCGCTTGGAGATCCTGATGATTGGGGAGAACCCTATTGTTCAATTGTCAGACATGAACTTCAAGCCCTTGGTCAACCTACGCAGCTTGGTTCTGGCTAGGATGAATCTCTCCGAAATCCCAGATGACACTCTGGTCGGCCTCGACAACCTGGAGAGTGTTTCGTTTTTTGACAACCTGTTTGACAGAGTGCCACAGGCTGCTCTGAAGAAATCCAAGAGTCTGAAGTTTCTGGATCTCAACAAGAACCCCATCGAGAGGATTCAGAGAGGGGACTTTGTGGACATGATCCACCTCAAAGAGTTGGGCATCAACAGCATGCCTGCGCTGGTGTCCATCGACAGCTTTGCCCTCAACAATCTCCCTGAGCTGACCAAGATTGAGGCCACCAACAACCCCAAGCTCTCCTACATCCACCCCAATGCCTTCCACAAGTTGCCGAGACTCGAAACACTGATGCTGAACAGCAATGCCCTCAGCGCCTTGCACCACAGCACTGTGGACTCCCTGCCCAACCTGCGTGAGGTTAGCATGCACAGCAACCCCATCCGCTGCGACTGCGTCATCCGCTGGATCAACATGAACCAGACCGGCGTGCGCTTCATGGAGCCAGATTCCCTCTTCTGCGTGGAGCCGCCGGAGTACCAGGGCCAGCACGTCCGCAAGGTCCATTTCAGGGAGATGACCGAGATTTGCCTCCCGCTCATCTCGCCCGGGAGCCTACCAGATCGTGTCACCGTTGGGAAAAGGAGCTCGGTGACGCTTCACTGCCGGGCATTCGGAGAGCCGGAGCCAGAGATATACTGGGTCACCCCCTCCGGGGACAGAGTCCTGCCCaacagtgtgtctgataagtacTACATGCATCCAGAGGGGACCTTTGACATCTATGACACTACCATGCTTGAGGCAGGGCTGTACACCTGTGTTGCTCACAATCTTGTTGGTGCAGACCTCAAGTCTGTGTTGTTGGTGGTAGATGGATACTTTCCACATCCTTCTGATAATGGCAATGCTTTACATGTGGACGTTAGATCAGTGCAGCCCAACTCTGTTTTGGTGTCTTGGGATAACACTCACGGTGGTCTTATATCCAATATAAAGTGGTTCACAATGGCGAATGCTAAGCATCCCTCCATGGCATACACTGCTAGAGTACCAACCGATGTGAAGGTGTATCGTCTCACCCACCTAAACCCCTCCACCCAGTACCGGGTGTGTGTGGAAGTCACGAGCATGCAGCTCGGACACAATAGGGACTGTGTCAATGTCACCACAAAGGGACTGGCTCACACCGTGGAGAGCAGTGAGAAGTGGGACACAGTGGTGATGGCTGCATGTGCTGTGCTTTTCATCGTGGTTGCTGTGGCTTGCTCCATCATATACACATCTCTGCAAAGCCAACACTTTTACAGGAAGTTGATGGTGGACCAAAATGAGTCAATGCTGGGTCCTAGCACCCGCCCCGGCTCCGCCTCTTCTCTCACAGAACTCTGTGTGGCTGGAGTCAAGGTGAAGGTGACTGTAATAGACTTGCCAGACAACTCCATGTAAAGAAAGAGACGGCCTTGGAGCAGGAAAATTAATGTTCTGGATTTTAAACAAGGTGAAAGAATGTTGGACATGTGTGATTCATGTGCCCTCTTTTCATGACAATGACAGAGCATTGGGTTCTGGAACTCCTGGAACTTGGAACACATGATGGAACCATAAACCGGCGCCCTCACGCATAAATACGTAACCAGCTAATCCAAGACCCACAGACTCTTTTATACAACAAAATTATGTCGTTGCAGCAAAAACATGCACAGACAGGTATCTAGATTGCGATATACGTGGCTACTGATCGGTCATTCATGCAGTGCAACTGCAAAAAAGCACAGCACAAAGACTGTGTCGTCTCTTTTGGTTATTGACTTGTGCTTTATAACGCCTTGTGGAGATGTGTCTTTGTGGTCCACAATGAGGAATATTTTCTGTGCTGTTTAAATAACACTCAAGGGCCATAAGTAAGAAATACCACTCGTATACAGTTTATAATGGGCAAAACTTGTTAGAATAGTAGACAATAACAGTGTATATGTAAACAATTTtatgatcaaatattttttttcattaaaAACAGTACATTGTATTTTAATCGAAATGTAATGCTTTCTCTTACTTACTTGAAATTGTAATTACGAAAGACCCAACTTCAAGGATGACTTGCTTAGAACAATCTGAATCCGATATTGGGATGCTCTGAAAGGAACAATCTAAGCTTCCTTTATCAATAACATTCAGCTATCCATGAAATGCAAAATGTTATAATTCATAAATATGAATCCCATACATCTTTTCATATCACTGTCTAAACCATGCAAAAGGAAAACAGTGTGATGTAGACAAACACAATTACTGGGACTGCCCTTGAAGGCGGATATTTTAACATTGTTACTAAAATGCAATCTCAGGCAGGACGACGTGTTTTGGCAATGACTGGGGagtaagagagagtgtgtgtatgtatataactTACACACGGtactttatatgtgtgtgtgtgtgcggcatcAGAGAAACCCAATGACTTTGAATTGCAATATATTCTCTTTCATTTAAAACCCAATATGGATTCCTAACATAAACCTCAGAGAGGTGATGAATTGGCGTCACATGCGGACTGATGGGGGCATTTATCAGAGGGACTCCGCCATATATCAACTGAGTTTCAGCACCTTGGACAGGGCTTTTAGAGTGGAGCCATTTGTCACCGCCATGGGAGCTAAAATATGACCCATTAGAGCGCAGGTAGTGCATAGGTCAGCGAGAACACACGGAGGCTGCTAGCACCGGAGCGCGGTGCGGTGCGTCCCTTCCCTCCGTGACACTGGCGAGACATGGATGCCATTACAGGAACAGCTCAGCAACTCTTGGGCTCGTTTGTTAAGCACTTCACATTATTGCCACCCACCGAGAGGGGAAGGAGACAAATGGAGCGCAAAACGAGGACAAAGTGTCTACTAGGGCTAGAAGTCAGTATGAACAGGGACAGGATAGACAAGGTGCAGGTTCGACATATTGAAGGTGGAACAACAGTACTGCTGTAGGTATTAGAGATGTGTGTATGGTTTTATTTGACTGCACAGTGAGATAATTGCACAACAAGATAACAACAAGATAAGAATGCTCATTAAGGGAACTTGAGTCTTTAGTATATTCCCTGGTTCATTAGGGTAGCTTACTTGAAAGGAGAGCTCTCAGAGAAGAACTGACAGGACCTCCACTGAGGTTTCATCACACATTTTTTACTCCTCCTTTTGCCTAGTTTGAACTCCAGATAACCCCAGATGAGAGCAAATGATATGTCAACATGCAGTCCACTCAGAGAAAATGAAATATTATCTCGTAAAATGTTCACACATGCAAAAAAGCTATTTTCCAATAAAGGCCCGATGGCAATATGCCCTTCTGTTGTTATTGTTTGTGCACCACCTGGGGGCACGCAATATGGTGAGAAAAACAGGAAAGAAACTGTTACATATATTTAGTATTGCTCACATAAACTCCCACCGTGCCATATTACAAGGAATTGTAACTGTTAAAATTCCTTGCCGTAATAGCACTAAGAAACTGTTCCTAACAATAAACAAGTTCAACCCCTTT

Function

symbol description
lrrn3 Predicted to act upstream of or within positive regulation of synapse assembly. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
leucine-rich repeat neuronal protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576110.2 True 4870 mRNA 0.47 2 88959372 88971921

Neighbor

gene id symbol gene type direction distance location
LOC110533889 NA coding downstream 151871 88806088 ~ 88807501 (-)
znf277 znf277 coding downstream 188400 88763558 ~ 88770972 (-)
LOC110499075 LOC106561496 coding downstream 302420 88630479 ~ 88656952 (-)
LOC110499068 LOC106561495 coding downstream 385169 88569351 ~ 88574203 (-)
dnajc24 dnajc24 coding downstream 753899 88185028 ~ 88205473 (-)
amfra LOC106561518 coding upstream 80849 89052770 ~ 89069349 (-)
nfatc3b LOC106561519 coding upstream 108004 89079925 ~ 89100055 (-)
dus2 dus2 coding upstream 128336 89100257 ~ 89106727 (-)
slc7a10b LOC106561521 coding upstream 135064 89106985 ~ 89124165 (-)
LOC110499212 faap24 coding upstream 152385 89124306 ~ 89127179 (-)
G200496 NA non-coding downstream 175121 88784031 ~ 88784251 (-)
G200492 NA non-coding downstream 177786 88778982 ~ 88781586 (-)
G200253 NA non-coding downstream 247884 88655772 ~ 88711488 (-)
G200285 NA non-coding downstream 250913 88706620 ~ 88708459 (-)
G200240 NA non-coding downstream 333130 88623394 ~ 88626242 (-)
G200714 NA non-coding upstream 71330 89043251 ~ 89044998 (-)
G200716 NA non-coding upstream 74463 89046384 ~ 89048900 (-)
G200724 NA non-coding upstream 99171 89071092 ~ 89071566 (-)
G200725 NA non-coding upstream 100039 89071960 ~ 89072223 (-)
G200726 NA non-coding upstream 100454 89072375 ~ 89072603 (-)
G198912 NA other downstream 1632903 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2055416 86903036 ~ 86903956 (-)
G197554 NA other downstream 2995707 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3115879 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4319616 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 634916 89606837 ~ 89609890 (-)
G202279 NA other upstream 1405636 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2617291 91589212 ~ 91591049 (-)
G204024 NA other upstream 2815266 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3426139 92398054 ~ 92443838 (-)

Expression


Co-expression Network