amfra (LOC106561518)


Basic Information

Item Value
gene id amfra
gene name LOC106561518
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89052770 ~ 89069349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576137.2
gttcacacagacagacaaattctgatatttttttatgtaatttAGAGCGCTCTCTGATCCAGCCAATCCAGAGAGGAATCCAGATGCTCCAAAACCGGAAGTACACCGAAATAGACGCAATAAAGTGGAAACTCAGAGATATTTCTACAGCAACATGCAATAGGAGGGTCGACACAGTTAAGCCTTTTACGGTTTTTTCAGAGAGACGCCGATATACAGTTGGTATTTGGCGACATCGTACATAGTTATCAGCGTGTACTAGTTTAGCTAGCTAAACTGTTGTTGATTTACCAGTATATTTACCatatacctagctagctagccaaggaGGATGCATATCAAATGTTACCACGGTATTAGCTACAAACGAGATAATTAAGTTAACGTTTTCTAAATAACGCTAAATTAAATGTGCACTACGCATAAATCGCTGCACCATTTCCTGCTTgcttgctaaaattctaatagttcgcctaatttcagtttgtgataaAAACAGATCAGTGTACCATATAAACCGTCgataaatatattttcaataaccaaaacatatagtattttcatctgtttgaagctggtgtattGAACTGAAAGTAAAAGAGAAAATGTAAAACGGGAAGGAAAGATATAGCGCACACAACATATCTACCGCTTCTTGGACTTGCGAATTACATATCTATTACTTAAATTTCTATGTGTATTTGGTGGGGTCTTCCAAAAAGTGACATTTCATCTTTAAATCACTAGTTGATAAAATAATCTCTCGAAATAGGTGTTCACTCAATACGTATTTATCTGAACTTTTCAACGTGGCAAACCTTGCACCAGTCAATATGCCTTTGCTGTATTTGGTGGGGTCTTCCAAAAAGTGACATTTCATCTTTAAATCACTAGTTGATAAAATAATCTCTCGAAATAGGTGTTCACTCAATACGTATTTATCTGAACTTTCCAAAGTGGCAAACCTTGCACCAGTCAATATGCCTTTGCTGTTTTTGGAGAGATTTCCATGGCCCAGTTTGCAGACATATACAGCTCTGAGTGCTGTATTTCTCGCTGGGTCCATATTGAGTGGCTACTGTACTGTCCCAGAGCCAGTagagtacacacagacacagagtagTTCTCCTGTAGAAAGTGATGATGTTGATGAGGACCCAATCACCAGCCTTAGCGATGTGGCAGCCACTGTCCGGTTGTACCTGGTCTCAGACACTGTTTTTGTTTGGGTGATGGTGAATACAGCCTGCTGTGTCCTGATGCTGATTGCAAAGGTGATCCAGTGCATTGTCTTTGGGCCGCTCCGTGTCAGTGAAAAACAGCACCTAAAGGACAAGTTCTGGAACTTCATCTTCTACAAGTTTATCTTCATCTTCGGGGTGCTCAACGTTCAGacggtggaggaggtggtgatgTGGTGTCTGTGGTTTGCTGTCCTCGTCTTCATGCACCTCATGGTCCAGCTCTGCAAGGACCGCTTTGAATATCTGTCATTCTCACCCACCACTCCTATGGTCAGCCATGTGAGGGTTCTGACCCTGCTGGTGGGTATGCTGCTGACCTGCTGTGGCTTGGCTCTGCTCTGTGGGCTCCTGGGAAATCCCCACGGCGTACACACCGTCACCTTCATGGCCGCTGAGTGTATGCTGGTGTCCGTTAGAACTGGACATGTCATTATCCGGTACTTTATCCACCTGTGGGACTTGAACCATGAGGGCACCTGGGAGAGTAAAGGATCCTACGTTTACTACACTGACTTTGTGATGGAGCTGGCTCTGCTGGGGCTGGACCTTATGCACCACATCCACATGCTGcTGTTTGGTAACATCTGGCTCTCTATGGCCAGCCTGGTGATCTTCATGCAGCTACGTTACCTGTTCCATGAGGTGCAGAAGAGAATCCGTCGCCACAAGAACTACCTCCGTGTCATCAACAACATGGAGGCCAGGTTTGCTGTGGCCACCTCTGATGAGCTGGTAGCGAACAATGATGACTGTGCTATCTGCTGGGACTCCATGTTGACAGCACGCAAGCTGCCCTGTGGACATCTCTTCCACAACTCTTGCCTGCGTTCCTGGTTGGAGCAGGACACGTCGTGTCCCACTTGCCGTATGTCTCTGAACATCAGCGAgggggctggaggagagagagaggagaggcagagggagccCATGCTGGAAGACAACATGGGCCCTGGAGGCCCCGGCCCAGATGCAAGGCAACACCTCAACCAACACAACCACTTCTTCCACTTTGATGGTTCTCGCATTGCCAGCTGGCTGCCCAGTTTCTCTGTGGAAGTGATGCACACAACCAACATCCTGGGAATTGTACAACAGGCCAACAACTCCCAGCTCAATGCCATGGCCCATCAAATCGGGGAGATGTTTCCGGGGGTTCCCTACCATCTTGTGCTGCAGGATCTGCAGCTGACCCGCTCTGTAGAGGTCACCACTGACAACATCCTGGATGGACGCATCGTGGTTCCTTTCCCCATACAGcCTGTGGATCACTCCGCCTCCCACGTCAACCCCTCCCCACAAGATGTGGGTGGGGCCAGCGGGAGTTCAGAGTTCGTGACCCCCGAGGTGGAGGACTTTGAGGTCAGAGGCAGCCGCTTCTCCAAGTCAGCCGAGGAGAGACAGAAGATACTGCTACAGAGGAAAGATGAGCTACTGCTACGAGCACAGAGGAGATATCTGAGCAAGAGCCCAGAGGAAAATGCTGCTGCTATGAACGACGATGATGAGTACGATGAAGGTCTGCCCTCTCTTGAGGATGACATCCCAGCAGGCTCAGTTTTAGACTCTATGACCCTGCGACGCAGAAAGTTAGCGGCAGCTGCTGAGCGCCGCATGCACACTTACCAGTGAAGAGGCTGGACTGGGAACTAGGGCCGGGATGATACCAGTATTACCATACTCGTTAGTATCATGGCAAGGAAACCAAACACAAAGCGGAATTAACTTTAGGAAAACATCCCTAATGTTGGAATCAAATGtaattatgttgtcatccagagtcacgtgtatttattttccaagctgtagCAAACAATATCTTGCATACAGCAGGTTATTAAAGGACCAGAGTTAGATCTGCTTCGTGTTTTAATTTTGGTCATGGAATTTTTTTTGTGATACTGGTATTGTCACAGCCCTAGTGGGAACCAGTAAGATTTAAACTGGTTATGACAGGTCTCACTGTACCACCAAACCTGCCCCTCTACAGTCCATCTAGGGCTGGAGTAAGTAACCTACTACTGAATGGACTGTCTATCTGTTAAATTAACCTGAGAAATGTGCATGATTACATTTTTCCCACCCTGTGTTTTAAACATGAGATCCCAGGCTTTGTCACAATGGACCGTGACCGGGAGCCCCATAGGagggtgcacaattggcccagcactgtctggggtaggggagggtttggccggtggggctttccttggctcatcatgctctagcaactccttgtgatagggccgggcacctgcaagctgaATCCCGTCGTCAATTGAacatattggtgcggctgacaTCCAGCTCAAGCAGGCGGTGTGGTAAGGCAGCCAGccaggcgggtcatgtttcggaggactcatGACTTGGCCTTTGCCTCTCCCAAGCCCATTGAGGAGTTGCAGAGATGCCAAGGGACCTAATTCGGGGAGAAgactaggtaaaaaaaaaaactgcttgTGGCCATAACACCCAGAACACGCCTGTTCAGGGTCAGGCCTGGTTAGTACTGAGACGGGAGACTGCCTGCCAATACATTATTAGACAGAAATCTGTTTTGTCCACATTTCTGCTCCTATCTCTACCATGAAGAAACATTGAACAGACAGTCTCCATCTACTTTCTGATACTGCAGAGTCTAGTACAGTTTGATGTAGGAAAGATCTATTTTCTGTCCTGAATACATATATAGGCGCACGTACTCTTCATTTTTCAAGAAAAACGTTCAGTTCCATTGCCTTGTGTATTGATAGTGTACCACTATGATTCATAGCTAAAAGCCACATTTGAATTTGTATTATAAGGAGTTGAAATATGAATTGATTCTTTATTTGTGTACATGCGTAGATGGCATAGGTAGCATTTAGATTGTCTACATGATTCTTCAAAACCTTGGGTAAAGGCTTTAGCTGGATCACACTTTATTTGAATGGTACTGACCTACAGTGcctccggaaagtattcacacccttttacgttttccacattttgttaggttacagccttattataaaattgattcaattgttttttccccccaatttctacacaataccccaaataaaaaacatatcaccttta

Function

NR:

description
E3 ubiquitin-protein ligase AMFR-like

GO: NA

KEGG:

id description
K10636 AMFR, GP78; E3 ubiquitin-protein ligase AMFR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576137.2 True 4325 mRNA 0.46 13 89052770 89069349

Neighbor

gene id symbol gene type direction distance location
LOC110499152 lrrn3 coding downstream 80849 88959372 ~ 88971921 (-)
LOC110533889 NA coding downstream 245269 88806088 ~ 88807501 (-)
znf277 znf277 coding downstream 281798 88763558 ~ 88770972 (-)
LOC110499075 LOC106561496 coding downstream 395818 88630479 ~ 88656952 (-)
LOC110499068 LOC106561495 coding downstream 478567 88569351 ~ 88574203 (-)
nfatc3b LOC106561519 coding upstream 10576 89079925 ~ 89100055 (-)
dus2 dus2 coding upstream 30908 89100257 ~ 89106727 (-)
slc7a10b LOC106561521 coding upstream 37636 89106985 ~ 89124165 (-)
LOC110499212 faap24 coding upstream 54957 89124306 ~ 89127179 (-)
LOC110499228 LOC106561526 coding upstream 136527 89205876 ~ 89208585 (-)
G200716 NA non-coding downstream 3870 89046384 ~ 89048900 (-)
G200714 NA non-coding downstream 7772 89043251 ~ 89044998 (-)
G200496 NA non-coding downstream 268519 88784031 ~ 88784251 (-)
G200492 NA non-coding downstream 271184 88778982 ~ 88781586 (-)
G200253 NA non-coding downstream 341282 88655772 ~ 88711488 (-)
G200724 NA non-coding upstream 1743 89071092 ~ 89071566 (-)
G200725 NA non-coding upstream 2611 89071960 ~ 89072223 (-)
G200726 NA non-coding upstream 3026 89072375 ~ 89072603 (-)
G200727 NA non-coding upstream 3557 89072906 ~ 89073123 (-)
G200731 NA non-coding upstream 7327 89076676 ~ 89076887 (-)
G198912 NA other downstream 1726301 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2148814 86903036 ~ 86903956 (-)
G197554 NA other downstream 3089105 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3209277 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4413014 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 537488 89606837 ~ 89609890 (-)
G202279 NA other upstream 1308208 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2519863 91589212 ~ 91591049 (-)
G204024 NA other upstream 2717838 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3328711 92398054 ~ 92443838 (-)

Expression


Co-expression Network