nfatc3b (LOC106561519)


Basic Information

Item Value
gene id nfatc3b
gene name LOC106561519
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89079925 ~ 89100055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576146.2
TTTGTTTGTAATATGGAAGTTTAGTGAGTAGACTGACTGCTTCTTCAAGGGTAATCGAGAATAACTACGGACAAACTATTGTCTATGCGTCTTTTTTATTTGCATAACTGAACTGGTAAAGTATCGAGAGATTATAACGTCGTTATAAATGTCGTCTGGAGGGAACACGCATTTTGGAGTCGTTTTAACTATTTACAACTTCGGATAGGCTTCTTGCTGTTAATAGTAAAAACAAAAAGTATTTCCTCCTTACGTCGTTAAAATCTTGAATGCAGTTCTGAAACAACggcaaaaaaaaaaacgactCGTCAGACCGAATGAGTACTGTAAATTTTAGCGGCAATGAGGAGCTGGACTTCAGACTTATTTTCGGGGAGGAGGCGCAACAACAGCTAGGCCCCGTAGCTGGTCCAGACCCTGATGACAGCACGCAATACTACACCACCCAGCCTATTGGCCAGGCCCAGGACGTACAACAGAGTCACCAGCGCCATCAAGCTGTCTCTAACCAGGCTCCTCTGCAGGCCCATGGTAACTACCACCCTAGCTCCAGCTATGAAGATCACGGTTCCAGATACAGTGCCACTGGACACATCCCCAAGGCATTTGACTGCCCAAGCATCCAAATCACATCCATTAGTCACCAAGAGCTGGTCTCCAGCCAGGATGCCGTGCTCATCAGCGGGGCAGATGGTGGGGGGGAGTGCAGCCACGAGCGTTCCTTGTCCACGGACCACCTCTACCTGTCCCTGGACCCCTGTTACAGGGACTCATCCTCCCTGAACCCCAGCCCCTGCAGCAGCCTGTCCTCCAGGAGCTGGCTGTCTGACATGTCTTCCTGCGAGTCCTTCTCCCATGTGTATGACGACGTGGAGGCTGAGCTAAACGAGGCGGCCGCCCGCTTCACCCTGGGCTCCCCGCTGGCCTCTCCCCTGGCCTCCCCTGTCTGCTCGCCACAGGGCCAGGCCGCAGGGGGATTTGGGGTAGAGCTGTGGCAGCAGCAGTACTTCATGAACACCTACTCACTCTCGCCCCGACAGTCCCCTCGCGGGTCCCCCCACCAGTCCCCTCGCCAGTCGCCCCGCCAGTCCCCCTGTCACTCCCCGCGCAACAGCGTCACAGATGAGAACTGGCTGAACCTGCGTCCCACCTCCAGGTCTGGCTCAAGACCCACATCCCCTTGTGGGAAAAGAAGGCACTCCAGTGCCGACGTCCACTtagcctccccctccccctcgccACACCACTCCCCCAGCCCCACACCGGGCCACTCTCCCAGGGGCAGTGTGACAGAGGATACCTGGGTGGTTGGAAGCCCTGGTGCCATGGGGGCCCTCCTGTACAGCTTCCCTGAGGTAGACGTTCCGTCCAAGACCAGGAGGACCTCTCATCACATGGGTCTATTGCAAGCACAGGGAGATTCCGGGCAGAGGCTGGAAGACCACAGAGCGGCTTTGCctaacctggattcacctgcaGAGGAGTCTGAGTCTACTCTAAAACAGGATGGTCTTTTTGAAGAACTTTTTCTCTCGGTTCCCTCACACTTCACCTGGAGCAAACCCAAACTTGGCAACACACCCCTTTTCAGAACCTCGTCCCTGCCCCCTCTGGACTGGCCCCTGCCCAGCCAGTTTGGCCAGTGTGAGCTGAAGGTGGATGTGCAGCCGCGGGGCCACCACAGGGCCCACTATGAGACAGAGGGCAGTCGGGGGGCCATCAAGGCTGCCTCAGGTGGACACCCTTTAGTCAAGCTCATTGGATACAACGAGAAGCCAGTCAACCTGCAGATTTTCATTGGAACGGCAGACGATCGCTACTTGAGACCGCATGCCTTCTACCAGGTGCACAGAGTAACAGGGAAAACGGTGGCTACTGCTTGCCAGGAAAGTGTAATAAGCAGTACAAAGGTTCTGGAAATACCTCTGCTCCCCGAAAACAATATGTCCAGCAGTATTGACTGTGCAGGCATCTTGAAGCTGAGGAACTCTGACATTGAGCtcaggaagggggagacagacatCGGGAGGAAGAACACGCGTGTGCGAGTGGCATTCCGTGTGTATATCCCTCAGCCCAGTGGAAAGGTCATGTGTCTGCAAGCTGCCTCTATTCCTGTGGAGTGCTCCCAGCGCTCGGCCACAGACCTTCCCCAGATGGAGAGCTGCAGTCCCGTCAGCTGCTTGgtcagtgggggagaggagatggtCATCACCGGATCCAACATATCCCCAGAGTCAAAGGTCATCTTCCTGGAGAAAAGCCCTGATGGACACACACAATGGGAAGTTGATGGAAAAGTTATTGGTGAAAAGAGTAAAATATCCAGAATCGTGGTTGAGATTCCTACCTACCACAACACAACTGTGAGCTCTGCAATCCAGGTGCAGTTCTATGTGTGTAacgggaagaggagaagaagccAGACACAAAACTTCACATACTTGGCTGGTGCTTCTCCACACCATTATCCCACTGCCATTGACTGTGCAGTTGTGGCTACTCGGGTGAAGCAAGAGCACGGAGACTCAGCCTATCTGTCTACCTGCACCAATCCCCCTGGCCTAGATCCAACCAGCAGCCAGCTGACTTCTCCAGACGGGGCCTTCTCTCAGGACAAGCCCTTGTATGGTTCCTCTGGTGGTCACCCAGTGCCTTGTGATCCACCCTCCCAGGCAGCATACACTCCCTCTTGCTCCTCGCCTCTTCAGCACTCCCCTCACCTCCACAGCTACAGCCCCCGTATGGGATACCAGCAGATAAGCCTTGTGCATACACCTGACCCCATGCCACCCATTCGGACAAGGCCTGTCTATcaggtcacacaacacaatgtgccTTACAGTGGCCAGGCCAGCTCTCCCATGAGACCTGGCCCTGCCGCACCCCAGGTCAATCGACCTCAGTCtgcccagaccagaccagctgcCTCCAGCCCTCATAGGGAAATGTACCAGAACCTCATTGGACCTGATCTCTCTGGCGCCACTCTCCAGTCTGCGGGAAACCACACCCAGAATACAACCCAGCTGCACTCTCTAAGCTACCACTGCTCCCAATCAGACTCTGATCTGGTAGCCCTACAGGCTGAGTATAATCTGAGCTATCACTCTGCAAGAAACTTGCCTGCCTCGTATTCCCCCACCCCTGGAGCACAAGCAACCTGCTCCACCTCCCCGTCAGCATCAGCCTCCTCTGGGGGTCCTCTGAGGCAACTGTCCCCCAGCAGAGCCCAGGGCCTGGCCTCTAGTAGTGACCCCCAGGAGTGTCCCCCGGCCCCCCATTTCCATTTCTCAAACGACCATGGGAAAGTGAACATCAAGCAGGAACCAGAGGAGAAGCTGCCTCTCGGCAACATGGGGCTCCAGGAGATCACACTGGATGATGTGAATGAGATCATCGACAGAGACATATCTCAGCTCGTTGGTGGTAGTGCAGCAGAGTCCAGCCAACCAGGACAGGATCCTTATGAATGGGATTCTGTGATTCTCCAGTGATAATGTTCTTCCATTCTTTGTCTTTCATTCATTTTCTAATCATCATTACTCAGGACATGAGTTGACTGGTGCTATCAATGCATTTGGCAGTTCTATTATAACTGATCACAATTTTGATGGCAAAACTGTGGTGGCTTAAAGAGATTCTCCTGtccttttgtatactttttagccagtagttttgaaagtagcgCTTACAAGCCAAAAGTTGTCCCTGAAAATTGCATACTATGTCACATATGTGCACCAAGTCAttgctctctctgtcgctctgctgtgtgtgcatcttgctagctgtcaaatggcgaggggctgaagctTATTGGCTAGAACTtaaattgctagggggctggcccatgTGGGGGAAAATGTGGCAAAAATGGCACAGCACAGCTTCACAAaaaacagtcgctttcaaactagggatttcgtgACTAATTGAGataaaacagtaattctgctcatagattatgcatgtatgaactacacattgacacatccatcCCAAAGCGGGAGGTTGAACAAATAATTAGTAGTCACCAAAGTTCCCAAGCATGTCTTTAACTGGTGCAATTACCAACCCAGTCACTGGTAATTCATATAGGTGGTTAGGTTGTAGAGAAGTTATGCCTGTTTAACAGATCACGATTTTCAAGTCAAACTAAAGTATCTTTCAGGAAAAAAGATGGCTATGTCTCTCATACCAAAGATCTTCCTGCTGCCTTTTGAAAAAGAGCAGATGGAGGCACAGCTAAAATATGTCACAGCTAAAATGTCTATAAATGCATAAAAATGACTAATTTGCTGTTGAAAGAACCTTGATGTCAATGAAGAGGCTGAAGAAGGCCAAATAGTAAATGCTGTATTATTGTAATATTTATTGGCAAAATATATTAGATTTTAATCTATTTTTTTATACTGTAGCTCTTGCAGTTGTATGATTCTTTAGAATAATGATTCATTTTCATAGCCTTGTATTGACGGCCTGGTATTGTCTGCCCATTTTCTATTTTAGGATTTTACTTTCCAAAGAATGTACAATATTATAAAGAATTATATGACACTCTTTGGCAATATGTCAGGTGTGAAGCAGCTATTTCAAAGTCAAAGTTTCTTCATCGGGTGGTTTTGTTCAATTAAaagaaaacaaatgtaaaaaatctTGTTAGCTGTATCTATGAGTGGTATCAAAATGATATAGGCCTACAACAGGTGGGTCGTGGGTGTAGGTGGTTACACTTTCTCCTTTTTTCCCACTCAGTCAACACATGCATGATGTTGCGACCACAGGAATGGGACAACATGTACAGtgttttcagaaagtattcacaccccttgactttttttaaattgattaaattcagattttgtttcactggcctacacaatagcccataatgtcaaagtggaattatgtttttagaaatttttgtaaattattttcaaattaaaatctgaaatatcttgagtcaa

Function

NR:

description
nuclear factor of activated T-cells, cytoplasmic 3-like isoform X1

GO: NA

KEGG:

id description
K17333 NFATC3, NFAT4; nuclear factor of activated T-cells, cytoplasmic 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576146.2 True 4970 mRNA 0.49 9 89079925 89100055

Neighbor

gene id symbol gene type direction distance location
amfra LOC106561518 coding downstream 10576 89052770 ~ 89069349 (-)
LOC110499152 lrrn3 coding downstream 108004 88959372 ~ 88971921 (-)
LOC110533889 NA coding downstream 272424 88806088 ~ 88807501 (-)
znf277 znf277 coding downstream 308953 88763558 ~ 88770972 (-)
LOC110499075 LOC106561496 coding downstream 422973 88630479 ~ 88656952 (-)
dus2 dus2 coding upstream 202 89100257 ~ 89106727 (-)
slc7a10b LOC106561521 coding upstream 6930 89106985 ~ 89124165 (-)
LOC110499212 faap24 coding upstream 24251 89124306 ~ 89127179 (-)
LOC110499228 LOC106561526 coding upstream 105821 89205876 ~ 89208585 (-)
LOC110502285 sall1 coding upstream 337211 89437266 ~ 89443782 (-)
G200731 NA non-coding downstream 3038 89076676 ~ 89076887 (-)
G200727 NA non-coding downstream 6802 89072906 ~ 89073123 (-)
G200726 NA non-coding downstream 7322 89072375 ~ 89072603 (-)
G200725 NA non-coding downstream 7702 89071960 ~ 89072223 (-)
G200724 NA non-coding downstream 8359 89071092 ~ 89071566 (-)
G200861 NA non-coding upstream 68233 89168288 ~ 89176984 (-)
G200927 NA non-coding upstream 192090 89292145 ~ 89292353 (-)
G200957 NA non-coding upstream 215918 89315973 ~ 89316363 (-)
G201476 rbl2 non-coding upstream 305536 89405591 ~ 89406205 (-)
G201485 NA non-coding upstream 320442 89420497 ~ 89422372 (-)
G198912 NA other downstream 1753456 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2175969 86903036 ~ 86903956 (-)
G197554 NA other downstream 3116260 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3236432 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4440169 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 506782 89606837 ~ 89609890 (-)
G202279 NA other upstream 1277502 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2489157 91589212 ~ 91591049 (-)
G204024 NA other upstream 2687132 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3298005 92398054 ~ 92443838 (-)

Expression


Co-expression Network