dus2 (dus2)


Basic Information

Item Value
gene id dus2
gene name dus2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89100257 ~ 89106727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576168.2
CAACGTTACTCGTAGTGAATTTGTCTGTTCTATGCAGTAATTTCTATTCCAAATCGGCGAGGTTTGATGATGCAAGatttcaaacaggaagtagagTCAACACGCGTTCCGGGGGATCAAATGAAGACCACTATAATGTACTTTCTGTAAATGACGGCGAATAAAGAAAAAATGACGGCCAATACAGTGGGTAGACTGTGTTTCCGCAATGTAAATGCACTGGCACCTATGGTGCGTGTTGGCACCTTACCAACGAGACTGCTGTCCCTGGATTATGGTGCTGATATTGTGTACTCTGAGGAGTTGATTGACATCAAAATGGCACAGTGTCAGAGAGTTGTCAATGAGGTCTTGGAGACGGTGGATTTCGTGGCTCCTGATGAGAGAGTGATGTTCAGGACCTGCGAAAAGGAGAAAGACCGTGTTGTCTTCCAGATGGGAACTGCGGACCCAGACAGGGCACTGATTGTGGCGCGACTAGTGGAGAATGATGTGGCTGCCATCGATGTGAACATGGGCTGTCCTAAGGAATACTCTACTAAGGGTGGGATGGGAGCTGCTCTGCTCTCAGACCCCGACAAAATCGAAGCGaTTCTTAGAACACTTGTGAAAGGAGTGTCCAAACCAGTGACATGTAAAATCAGAATATTGCCCACACTGGAAGATACTCTTAGTCTGGTAAAGAGAATTGAGAACACGGGTGTGGCAGCTATTGCTGTTCATGGCAGGTTAAAAGATGAAAGACCAAGACACCCTGTTCACTGTGACTTCATCCAGGCAATAGCTGAGGCGGTGTCCATTCCTGTCATCGCTAACGGAGGTTCTCTGGACCGGGTCAAAGCCCACGCTGACATCGAGGAGTTTCGGAAGGCCACCGGGGCGTCCTCTGTGATGGTTGCCAGGGCGGCTATGTGGAACCCCTCAGTGTTCCGCAGTCAGGGACTGCTGTCTGTGGAGGAGGTCATGGAGGAATACCTCAAATACGCCATCCGCTACGACAACCATGCCTTCAACACCAAGTACTGCCTCTGTCAGATGCTGAGGGATAAGGTGGAGTCTCCACTGGGGAAGCAACTCAAATCTGCCCAGACCAACAAAGAGATCTGCGAGGGATATGGGCTGCAGGAGTACTACACGAAGACCCAGGCAGAACTACAAGCCAGAAGGGAAGCCATCCAAACCAACCACAATCACCCCAACCAGCCTGTTCTAGATGGTGATGTCACCACAATGCATGTCAAATTTGAACGGAGGGAGTACCCTGGAGAATTCAGCCCTAAGATGTTCCTGCTGGAGTGGAGCCGCAAGGAGAACTTAGAGCAACCACGATATGAGACCGTACAGCGCTCTCAAGACCGGGCCTTCCAATCCATGGTAACGATGACAGGGAAAAAGTACAGATCCACTCTGTGGGAGAAGTCAAAGAAATATGCAGAGCAGGCTTCTGCTATAGTATGTCTACGTGTTTTGGGGCTACCAGAGGGGCGGGCTGGTGAAGAGTACTCTGGGTTGGTGGgcaagaggaagagggaggagaagagcaaCGAGACGCCAGATAAGGAGGACACCACTACATACTTTGGAGCCAGGAAAAGACACCTGAAGACATCTGAAAACCCAGAAGAGCAACGGGTCACCAACTATTCCAAATAGTGTACAGCACAAGACATGCACAGCCTgactactacactgtgtaacaACTGTGTAAAATGATTGCTTTACGACCGCAATAAGACAGCATGTACCTTTTATATTAAATGGTGACTGTTTTGCAGCAGGGGTCAGCTCTTACCATGGGGAGTGATTGATACAGTAGCGGTCATATTATTGTGAGATTGAGACATGGCAACGAGTAGTGTACAGTGTCTGAGATATTCTGTCAGCTCCCCCCCCAAATAGTCAAACAGACATCAGCATGAGGTGTTCAATGCTATTTATTTTTTCTCCTGGATTATTTTGTTTAGTGACAACAAGCCTGTTCGGTGTTGGTTTGCAGAAAACATGCTCTGCATGGGATTATTAAATGGccctattattattttattttttgataaACCAAACTGGTAATCGGATTAGTTTACAAAGAAACCGGTCCAAATGTGTAACAAGACAGTTTGTCAGGCTACTTTAAATCATGCATTCTGCTTACTCTTGCAATATTCAAAGGTTTCTTCTGTAAAGACACAATAGAAAACCACTTATCAACTTTCTGCACTACTCATATTGACCAGAAGCAAGTTTTTATTTTATAATTCTTGACAGGAGTGTATGTACAGTGTAGTGAAATCTGCCAGAGGAGGGCGGCACAGGAGCTGTATAAAGAGAGTTAATTTTCTCAGGCAGTATTTATTGCACCATTGTCTCACATGGGACCTTACAAAATTAGGAAAACTTGCTTTTTATGTTTTCATCCCAAATTAATTGGTTGTTGCTCTTTCACGTTAAACAATAAACGTTTTTGTTGATTGTA

Function

symbol description
dus2 Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be active in cytoplasm. Orthologous to human DUS2 (dihydrouridine synthase 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05543 DUS2; tRNA-dihydrouridine synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576168.2 True 2470 mRNA 0.46 16 89100257 89106727

Neighbor

gene id symbol gene type direction distance location
nfatc3b LOC106561519 coding downstream 202 89079925 ~ 89100055 (-)
amfra LOC106561518 coding downstream 30908 89052770 ~ 89069349 (-)
LOC110499152 lrrn3 coding downstream 128336 88959372 ~ 88971921 (-)
LOC110533889 NA coding downstream 292756 88806088 ~ 88807501 (-)
znf277 znf277 coding downstream 329285 88763558 ~ 88770972 (-)
slc7a10b LOC106561521 coding upstream 258 89106985 ~ 89124165 (-)
LOC110499212 faap24 coding upstream 17579 89124306 ~ 89127179 (-)
LOC110499228 LOC106561526 coding upstream 99149 89205876 ~ 89208585 (-)
LOC110502285 sall1 coding upstream 330539 89437266 ~ 89443782 (-)
LOC110499252 papd5 coding upstream 370283 89477010 ~ 89493170 (-)
G200731 NA non-coding downstream 23370 89076676 ~ 89076887 (-)
G200727 NA non-coding downstream 27134 89072906 ~ 89073123 (-)
G200726 NA non-coding downstream 27654 89072375 ~ 89072603 (-)
G200725 NA non-coding downstream 28034 89071960 ~ 89072223 (-)
G200724 NA non-coding downstream 28691 89071092 ~ 89071566 (-)
G200861 NA non-coding upstream 61561 89168288 ~ 89176984 (-)
G200927 NA non-coding upstream 185418 89292145 ~ 89292353 (-)
G200957 NA non-coding upstream 209246 89315973 ~ 89316363 (-)
G201476 rbl2 non-coding upstream 298864 89405591 ~ 89406205 (-)
G201485 NA non-coding upstream 313770 89420497 ~ 89422372 (-)
G198912 NA other downstream 1773788 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2196301 86903036 ~ 86903956 (-)
G197554 NA other downstream 3136592 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3256764 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4460501 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 500110 89606837 ~ 89609890 (-)
G202279 NA other upstream 1270830 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2482485 91589212 ~ 91591049 (-)
G204024 NA other upstream 2680460 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3291333 92398054 ~ 92443838 (-)

Expression


Co-expression Network