Gene
RNA
| Item | Value |
|---|---|
| gene id | tdrd12 |
| gene name | tdrd12 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 89132933 ~ 89162092 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tdrd12 | Predicted to enable ATP binding activity and nucleic acid binding activity. Acts upstream of or within germ cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in gonad; ovary; and testis. Orthologous to human TDRD12 (tudor domain containing 12). |
| description |
|---|
| putative ATP-dependent RNA helicase TDRD12 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036958486.1 | False | 6267 | mRNA | 0.50 | 34 | 89132933 | 89162092 |
| TU227260 | True | 223 | lncRNA | 0.32 | 2 | 89147584 | 89148112 |
89,104,000
89,108,000
89,112,000
89,116,000
89,120,000
89,124,000
89,128,000
89,132,000
89,136,000
89,140,000
89,144,000
89,148,000
89,152,000
89,156,000
89,160,000
89,164,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502274 | immp2l | coding | upstream | 152494 | 88815803 ~ 88980439 (+) |
| tmem168b | LOC106561512 | coding | upstream | 374199 | 88750768 ~ 88758734 (+) |
| bmt2 | bmt2 | coding | upstream | 382464 | 88738895 ~ 88750469 (+) |
| LOC110499119 | LOC106573246 | coding | upstream | 406232 | 88691427 ~ 88726701 (+) |
| LOC110499113 | LOC106561499 | coding | upstream | 465418 | 88661913 ~ 88667515 (+) |
| ankrd27 | ankrd27 | coding | downstream | 6222 | 89168314 ~ 89202963 (+) |
| LOC110499234 | rbl2 | coding | downstream | 232965 | 89395057 ~ 89422438 (+) |
| snx20 | snx20 | coding | downstream | 308287 | 89470379 ~ 89472518 (+) |
| mphosph6 | mphosph6 | coding | downstream | 338420 | 89500512 ~ 89502349 (+) |
| LOC110499288 | LOC106561532 | coding | downstream | 393481 | 89555573 ~ 89577445 (+) |
| G200685 | NA | non-coding | upstream | 32899 | 89099659 ~ 89100034 (+) |
| G200678 | NA | non-coding | upstream | 40620 | 89088665 ~ 89092313 (+) |
| G200672 | NA | non-coding | upstream | 57364 | 89075362 ~ 89075569 (+) |
| G200671 | NA | non-coding | upstream | 58209 | 89074443 ~ 89074724 (+) |
| G200670 | NA | non-coding | upstream | 58897 | 89073799 ~ 89074036 (+) |
| G200928 | NA | non-coding | downstream | 130488 | 89292580 ~ 89292872 (+) |
| G200945 | NA | non-coding | downstream | 148061 | 89310153 ~ 89310659 (+) |
| G201044 | NA | non-coding | downstream | 265617 | 89427709 ~ 89427934 (+) |
| G201050 | NA | non-coding | downstream | 268049 | 89430141 ~ 89430418 (+) |
| G201061 | NA | non-coding | downstream | 280370 | 89442462 ~ 89442713 (+) |
| G199223 | hipk3 | other | upstream | 1264966 | 87866877 ~ 87867967 (+) |
| G198811 | LOC106561481 | other | upstream | 1596005 | 87535936 ~ 87536928 (+) |
| G198784 | NA | other | upstream | 1636198 | 87493623 ~ 87496735 (+) |
| G198575 | NA | other | upstream | 1982443 | 87150202 ~ 87150490 (+) |
| G198417 | LOC106561459 | other | upstream | 2093697 | 87037511 ~ 87039236 (+) |
| G202039 | NA | other | downstream | 1285026 | 90447118 ~ 90447573 (+) |
| G202185 | NA | other | downstream | 1554850 | 90716942 ~ 90717421 (+) |
| LOC110499641 | LOC106561583 | other | downstream | 2074933 | 91235465 ~ 91239737 (+) |
| mgat4c | LOC106561589 | other | downstream | 2204245 | 91366282 ~ 91543765 (+) |
