Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499228 |
| gene name | LOC106561526 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 89205876 ~ 89208585 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| iroquois-class homeodomain protein IRX-5-like |
| id | description |
|---|---|
| K24889 | IRX; iroquois-class homeodomain protein IRX |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021576229.2 | True | 1968 | mRNA | 0.47 | 3 | 89205876 | 89208585 |
89,205,000
89,206,000
89,207,000
89,208,000
89,209,000
89,210,000
89,211,000
89,212,000
89,213,000
89,214,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499212 | faap24 | coding | downstream | 78697 | 89124306 ~ 89127179 (-) |
| slc7a10b | LOC106561521 | coding | downstream | 81711 | 89106985 ~ 89124165 (-) |
| dus2 | dus2 | coding | downstream | 99149 | 89100257 ~ 89106727 (-) |
| nfatc3b | LOC106561519 | coding | downstream | 105821 | 89079925 ~ 89100055 (-) |
| amfra | LOC106561518 | coding | downstream | 136527 | 89052770 ~ 89069349 (-) |
| LOC110502285 | sall1 | coding | upstream | 228681 | 89437266 ~ 89443782 (-) |
| LOC110499252 | papd5 | coding | upstream | 268425 | 89477010 ~ 89493170 (-) |
| hsd17b2 | hsd17b2 | coding | upstream | 293490 | 89502075 ~ 89505985 (-) |
| gpia | LOC100196524 | coding | upstream | 298039 | 89506624 ~ 89528804 (-) |
| lsm14aa | LOC106561533 | coding | upstream | 329913 | 89538498 ~ 89555355 (-) |
| G200861 | NA | non-coding | downstream | 28892 | 89168288 ~ 89176984 (-) |
| G200731 | NA | non-coding | downstream | 128989 | 89076676 ~ 89076887 (-) |
| G200727 | NA | non-coding | downstream | 132753 | 89072906 ~ 89073123 (-) |
| G200726 | NA | non-coding | downstream | 133273 | 89072375 ~ 89072603 (-) |
| G200725 | NA | non-coding | downstream | 133653 | 89071960 ~ 89072223 (-) |
| G200927 | NA | non-coding | upstream | 83560 | 89292145 ~ 89292353 (-) |
| G200957 | NA | non-coding | upstream | 107388 | 89315973 ~ 89316363 (-) |
| G201476 | rbl2 | non-coding | upstream | 197006 | 89405591 ~ 89406205 (-) |
| G201485 | NA | non-coding | upstream | 211912 | 89420497 ~ 89422372 (-) |
| G201489 | NA | non-coding | upstream | 222476 | 89431061 ~ 89431291 (-) |
| G198912 | NA | other | downstream | 1879407 | 87322139 ~ 87326469 (-) |
| G198342 | LOC100194703 | other | downstream | 2301920 | 86903036 ~ 86903956 (-) |
| G197554 | NA | other | downstream | 3242211 | 85959845 ~ 85963665 (-) |
| G197498 | slc25a18 | other | downstream | 3362383 | 85831239 ~ 85843493 (-) |
| LOC110498022 | LOC106561385 | other | downstream | 4566120 | 84596433 ~ 84910878 (-) |
| LOC110499346 | vps4a | other | upstream | 398252 | 89606837 ~ 89609890 (-) |
| G202279 | NA | other | upstream | 1168972 | 90377557 ~ 90441425 (-) |
| G203915 | rassf9 | other | upstream | 2380627 | 91589212 ~ 91591049 (-) |
| G204024 | NA | other | upstream | 2578602 | 91787187 ~ 91788103 (-) |
| LOC110499897 | LOC106573100 | other | upstream | 3189475 | 92398054 ~ 92443838 (-) |
