LOC110499234 (rbl2)


Basic Information

Item Value
gene id LOC110499234
gene name rbl2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89395057 ~ 89422438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576243.2
ACATAGTTGCTACCAAGTTTCCTGCACAGCATTTGAACGTTGACTGGCAGGCACGTGGGTGGTGGTTGCTACAAAGTTACACCCTATAGTGTCCAGAATGGGAAATTTGTCAAAACATCAATCTAAAAAGGAAAGTATCAAAGTTATCAGATGTATTTTAGTATGTAGTGGCTGGCATACGTTGTTGATCGTCGAATGTTGAGTATAAACACCCGAACGCATTTTTTGTGGGAGGAAACCTCCTGTACGCATGATGTTGCATTCACCAAACAACATACCATCCAAAATGTGACGTTGTACTTACTGTACGCTAGCATTTGGCGTAGTCTTCTACGCACGATAGTAGCTTTCACTCAAATGACATTTAAATGGCTACACTGTACAGCACAGTATATCGGTGCTCAAAATGTACGAATAGTAACATTGTTTCCATGTACTTTGTAACAAACCGCGCTTGAGTCGACTCTGCTTTGCAACCTCATTGTTATTTGTACAAGAATCTATTTGCGTTTCTACGTTTTTGACACACATTTGAAATGAACGAGGAGGAAGACTTTTTGCAGAAAATAAGGCTGGGGTTTGAAGAACTCTGTCGAGCTTTGAATATGGACGTGGAGGCGAGCAACGAAGCATGGAGGAGTTACGAAAGCATAAGAAAAAAATACACATTAGAGGGCAGTGACCTACACTGGCTGGCCTGTGCCATCTATGTGGCCTGTAGAACACCAGTACCAACAGTGGATAAGGGTACTGCAGAGGGAAACTACGTCTCCCTGACCCGAATACTCCACTGTTCAGAACAAAGCCTCATTGAGTTCTTCAACAAGATAAAGAAATGGCAGGATATGGCCAGTCTTCCTCAGGACTTCCGCCAGAGCACGGAGAAGCTGGAGAGAAATTTCACAGTTTCCGCCGTCATCTTCAAGAAATACGTCCCCATCTTCAAAGCCATCTTTAAGGCGCCCTCGGATGAACCACCCAGAGTCCACAGGAGCCGCAAACAGAGACGCCATCCCTGCACCGTTGCTGAAGTCTTCAACTTCTGCTGGATTCTGTTTGTCCACGCTAAAGgAAACTTCCCTATGATCAGTGATGACCTAGTGAATTCGTACCATCTCCTTCTGTGTGCTCTGGACCTGGTCTTCTCCAACGCTCTGCTCTGTAATACCAGGAAGGAGCTGCTCAACCCCAACTTCAAAGGCCTTCCTGAGGACTTCAGCAGTAAGGACTACAAGCCCACTGCAGGGCCTTACTGCTTCATAGAGCAGCTGTGTGAACTGCATGATGGCCTGGTGCTGGAGGCCAAAGGGGTGAAGGAACACTTCTGGAAACCCTTCATCAGTAGGCTCTTCCATAAGAAGATTCTCAAAGGGAAAGAAGAGAGCTTGACTGGCTTCTTAGATCCAGTGAATTTTGGAGACAGTTCTGTGTCCATAGGCCGTGTGTATGAGGAGCATGTTCTGGCCACTGGAGGTCTGGATGATAGGATATTTTTGGGAGAGGGCACCCCAGGCCCCTGTCtctgtgagggagaggagaaccagGACGCCTCAGCATACAGACTCTACAACAGTCAgactGCCTCAGTCCTGAAGCGTATGTGTATGCCGGTCTCTACTGCCATGCAGAGTGTTGGTCGACTACACAGCCTGCTCACTGGACTGAAGCGCGGCCCCAGCCGGAGACTCACAGACTTACTAAGGTCGTGTGCCAGAGACCCCAGTGAGGTCATCTCCACTAGGCTGAAGGACATGTGTCAGCTCTTCTGCCAGCACTATGAGGGCAACTGGGAAGAGAACGCAGGACTGGGGAAAGACATCGCAGTGTACTTCTGCCTGGCAGAGGCGCTCTACTATAAAACCCTGGAGGCCGTCATTGACCAGGAGAAGAAGAGACTGGGCAACTTGGATCTCTCTGGTATTCTGGAGCAGGATGTGTTCCAGCGCTCTCTGATGGCCTGCTGTCTAGAGATTGTCATCTTCTCCTACCGACCCCCAGGGGACTTCCCACGAATCATACACATTTTCCAGCTCCCTGCATACCACTTTTATAAGGTGATCGAGGTGCTGGTGCGGGTGGAGCAGGGTCTGTTCAGGAAGGTGGTGAAGCATCTGAACCAGGTGGAGGAGCAGGTTCTGGAGAGCCTGGCCTGGAGGGGGGGATCCCCGCTGTGGGACAGCGTCAGGGGGGCCAAGAACCAACCACCCTCCTGCCAGGAGGTGATGCCACCACAGCATCTGGAGGATGGGGACGGAGCCGCCCCTCTCACCCCCAGCAACCATGGCACTGACCTGGGCGCCAACCGTGGTGGGAAAGGTgtgtccacctccaccaccaccatgttgGACCGCTACAGCTGCCCCGCCACGGGCTCGGCTAGGAGACGGCTGTTTGTGGATGTGTCCTGCGACGCCCCCTCGGACCCCTCCACCACCAACCTCACTACCAACCTCAGGACCTCCCAGGCCATCCCTGCTGGACAGACTGTGGTCACCATGGCAACGGCCACAGTTACCGCTAACAACGGACAGACGGTCACCATACCTGTGCAAGGAATAGCCAATGAGAACGGAGGCATCACCTTCATCCCTGTCAAGGTAAGTGTGACGGGACAAGGTACGCTCCAGCCCCTGTCTGCCCAGTCCCTGACTGGCACTTTGACCAGCCAACCACAGACCACCACCACCCTGAAAAGTCCCACTCTCCAGGGCAGCCACGCCGCCGGCAAGCCAATCGAGAAGCCGGCAGCCCAGGGCCCGTCCAATAACGGGCCTCAGAAAAAGAGTTCCCTCTCGCTGTTCTTCCGCAAGGTGTACCACCTGGCCAGTGTGCGTCTCAGAGACATGTGTGCCAAGCTGGACATCTCTAGTGAGCTGCGGAGGAAGATCTGGACGTGTTTCGAGTACTCTCTGGTGCACTACACAGAGCTCATGATGGACCGACACCTAGACCAGCTCCTCATGTGTGCTGTGTACGTCATGACCAAGGTGACCAAAGAGGACAAGTCCTTCCAGAACATCATGAAGTGTTACCGCTCTCAGCCCCAGGCTAGCAGCAGCGTCTACAGGAGTGTGTTGATCTCTGGGAGGAAGAGACGTCACTCAGGAAGCAGTGAGAGAAATGGACAGAGCTCTCCTACAGAGACCAGCCATGAGGGAAGTGGAGACAGCAGCCCCGTACCCATGTGTTCCACCAGCACCCTACCCACCCCTCAGCCTGGCAGCACCCCATCCACCCCCACCCTGGCCCCCTCCACCTTCCTCTCTAcgtcctcatccctccctccctcccagcagCAGGATGATGAAGGGGgagtggtggtgggggaggaggagcgaggagacCTCATCCACTTCTACAACCGGGTCTACATCAAACAGATGCTCCACTTTGCCCTGCGCTACTCACCCAGCTCATCCTCTGCagggCTAGAGTCTCCTCCCCTGTGCCTGTACCCCTCCCTGAGGACCAGCTCCCCTCGCAGGGTCCTCCTGTCCCACAACCACTCCATCTATATCTCCCCCCATAAGGCTAGTGACAGCCCCCCCACCGCTACCGCACAGGACAAGATAGACTACTACATCTGCAGTGGCCCAGCCAACCGCCTGGCGGAGATCAACAGTATGATCCGCACCGGGGAGACGCCCACCAAGAAGCACAGTATGCAGCTGGAGGAGGAGCCGTCTCCCAAGAGGTTGTGTCCGGACAACCAGACAGCCCTCTTCCGCAGGCTACAAGACGTGGCCAACGATCGTAGCTCCTCCCACTAAGGTTGAACACACCCCCTTCAGAACACACCACTGGCTGAAGTCGGTAGTCACCATACTAGACTGCCATGTTAAAAACAAATAAACTGGCAACATCATCAATATCAAAATTGATGAGGATACATTTGTTTTTCATAAAGGATAAGATCTTCTAGTCTAAGGTTAGTATGATGGTTTAATTTCAgagttagcctagtggttggtAGTTAAACATCAGATTTTAGGTTACTTCCGTCTATTCTAGCATGGCCAGATTGTGTCCCTTAACACCATATTTTTCTATATACACCGAGTgcacaaaatattaggaacacctcctaatgttgagttgcacccccccattTTGCCATCAAAACAgtctcaattcattggggcatggactacaaggtgttgaaagcattcctaAGGGATGCTGGCTGATGTTGCCTCCAATGCtccccacagttgtatcaagttggctggatgtcctttggatggtggaccattcttgatacacacaggaaacttgaGAGTGAAAATCCCGgcggcgttgcagttcttgacacactcaaagtggtgcgcctggcatctactaccataacccgctcaaaggcacttaaatccacaatccacgtctcaattgtctcaatgcttaaaaatccttccttaacctgtctcctcctcttcatcaacattgattgaagtggatttaacatcaataagggatcatcgctttcacctggattcacctggtcagtctatgtcatggaaagagcatgttcttaatgttttgtacactgtgtatgtCCAGAGTCAAATTAATGTATTTTGTCTAGAATACACAGTAATTACAGAATGGACTGCCATTGGTGTGGAGCTTTGCTAGTTTGTGTATATGGTGGAGAATAATTCAAAATCACATGCATTTTTAAGTGTATTCTATCAGTGTTACTAACTTGCTCATGCCCACAATTTAGCTGTTCAATATACTATGAATGAATTCCTTTCAGTGTTTTGATATTCTTCTTGAGACAAAATCCATCATTACACTCATATTCAGTATGTATTTAGGATTTCATATCTCAGAAGTTTATAAGATTAGTTTTTTTATTGAGTTGCGTCAGAATAGAAGAAAGCACTTAACAATGACCATGTTCTTaaaatattttatacattgtTTGGCCTTGAGTACATGCAAGCATTTCAAATACGTATTTTTAAAGCTTTTGTAACACCAGAGaagatgacatggtgttgttAACTCTGCCGGGTTTCTTTTCCAAAGTCTTTTGAGCttagttttattttgttattttgtatataattgtttaactaggcagatcagttaaggacaaattcttattttcaatgacagcctaggaacagtgggttaactgccttgttctggggcaaAACGACAAATCTtgactttgtcagctcggggattcaatcttgcaaccttttggttactagtccaacactctaaccactaggctacctgctgccgtaacatatttatgctatttttataaCTTTAGATATGTTAGCAAAAAACAGTAACTTTCCATTTTACCAATGACGATACTTAGTAGTAGAatcactgacaacaatatttgttTTCTGTCTCATGTAGCTTCCATTAATTATAAGGTAATACTTTTAGTATCCAATACATTTTATAATTGTGTTGTCAGTCACAATGGCATGTTATCGTTTTGTTGATCAGCAACTTAAAAGTAATGGCAAATGTCTTTGTCTGAACAttgttgtaaaataaataaaaaataaagcatATTATTTTATCGTA
>TU227536
GGGgagtggtggtgggggaggaggagcgaggagacCTCATCCACTTCTACAACCGGGTCTACATCAAACAGATGCTCCACTTTGCCCTGCGCTACTCACCCAGCTCATCCTCTGCagggCTAGAGTCTCCTCCCCTGTGCCTGTACCCCTCCCTGAGGACCAGCTCCCCTCGCAGGGTCCTCCTGTCCCACAACCACTCCATCTATATCTCCCCCCATAAGGCTAGTGACAGCCCCCCCACCGCTACCGCACAGGACAAGATAGACTACTACATCTGCAGTGGCCCAGCCAACCGCCTGGCGGAGATCAACAGTATGATCCGCACCGGGGAGACGCCCACCAAGAAGCACAGTATGCAGCTGGAGGAGGAGCCGTCTCCCAAGAGGTTGTGTCCGGACAACCAGACAGCCCTCTTCCGCAGGCTACAAGACGTGGCCAACGATCGTAGCTCCTCCCACTAAGGTTGAACACACCCCCTTCAGAACACACCACTGGCTGAAGTCGGTAGTCACCATACTAGACTGCCATGTTAAAAACAAATAAACTGGCAACATCATCAATATCAAAATTGATGAGGATACATTTGTTTTTCATAAAGGATAAGATCTTCTAGTCTAAGGTTAGTATGATGGTTTAATTTCAgagttagcctagtggttggtAGTTAAACATCAGATTTTAGGTTACTTCCGTCTATTCTAGCATGGCCAGATTGTGTCCCTTAACACCATATTTTTCTATATACACCGAGTgcacaaaatattaggaacacctcctaatgttgagttgcacccccccattTTGCCATCAAAACAgtctcaattcattggggcatggactacaaggtgttgaaagcattcctaAGGGATGCTGGCTGATGTTGCCTCCAATGCtccccacagttgtatcaagttggctggatgtcctttggatggtggaccattcttgatacacacaggaaacttgaGAGTGAAAATCCCGgcggcgttgcagttcttgacacactcaaagtggtgcgcctggcatctactaccataacccgctcaaaggcacttaaatccacaatccacgtctcaattgtctcaatgcttaaaaatccttccttaacctgtctcctcctcttcatcaacattgattgaagtggatttaacatcaataagggatcatcgctttcacctggattcacctggtcagtctatgtcatggaaagagcatgttcttaatgttttgtacactgtgtatgtCCAGAGTCAAATTAATGTATTTTGTCTAGAATACACAGTAATTACAGAATGGACTGCCATTGGTGTGGAGCTTTGCTAGTTTGTGTATATGGTGGAGAATAATTCAAAATCACATGCATTTTTAAGTGTATTCTATCAGTGTTACTAACTTGCTCATGCCCACAATTTAGCTGTTCAATATACTATGAATGAATTCCTTTCAGTGTTTTGATATTCTTCTTGAGACAAAATCCATCATTACACTCATATTCAGTATGTATTTAGGATTTCATATCTCAGAAGTTTATAAGATTAGTTTTTTTATTGAGTTGCGTCAGAATAGAAGAAAGCACTTAACAATGACCATGTTCTTaaaatattttatacattgtTTGGCCTTGAGTACATGCAAGCATTTCAAATACGTATTTTTAAAGCTTTTGTAACACCAGAGaagatgacatggtgttgttAACTCTGCCGGGTTTCTTTTCCAAAGTCTTTTGAGCttagttttattttgttattttgtatataattgtttaactaggcagatcagttaaggacaaattcttattttcaatgacagcctaggaacagtgggttaactgccttgttctggggcaaAACGACAAATCTtgactttgtcagctcggggattcaatcttgcaaccttttggttactagtccaacactctaaccactaggctacctgctgccgtaacatatttatgctatttttataaCTTTAGATATGTTAGCAAAAAACAGTAACTTTCCATTTTACCAATGACGATACTTAGTAGTAGAatcactgacaacaatatttgttTTCTGTCTCATGTAGCTTCCATTAATTATAAGGTAATACTTTTAGTATCCAATACATTTTATAATTGTGTTGTCAGTCACAATGGCATGTTATCGTTTTGTTGATCAGCAACTTAAAAGTAATGGCAAATGTCTTTGTCTGAACAttgttgtaaaataaataaaaaataaagcatATTATTTTATCGTA

Function

symbol description
rbl2 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of G1/S transition of mitotic cell cycle. Predicted to act upstream of or within regulation of cell cycle; regulation of cell division; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Predicted to be active in chromatin. Is expressed in neuromast. Orthologous to human RBL2 (RB transcriptional corepressor like 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576243.2 False 5553 mRNA 0.48 21 89395057 89422438
TU227536 True 2244 TUCP 0.35 3 89419769 89422438

Neighbor

gene id symbol gene type direction distance location
ankrd27 ankrd27 coding upstream 192094 89168314 ~ 89202963 (+)
tdrd12 tdrd12 coding upstream 232965 89132933 ~ 89162092 (+)
LOC110502274 immp2l coding upstream 414618 88815803 ~ 88980439 (+)
tmem168b LOC106561512 coding upstream 636323 88750768 ~ 88758734 (+)
bmt2 bmt2 coding upstream 644588 88738895 ~ 88750469 (+)
snx20 snx20 coding downstream 47941 89470379 ~ 89472518 (+)
mphosph6 mphosph6 coding downstream 78074 89500512 ~ 89502349 (+)
LOC110499288 LOC106561532 coding downstream 133135 89555573 ~ 89577445 (+)
LOC110499364 LOC106561540 coding downstream 306502 89728940 ~ 89740218 (+)
LOC110499385 LOC106561542 coding downstream 350161 89772599 ~ 89793099 (+)
G200945 NA non-coding upstream 84398 89310153 ~ 89310659 (+)
G200928 NA non-coding upstream 102185 89292580 ~ 89292872 (+)
G200685 NA non-coding upstream 295023 89099659 ~ 89100034 (+)
G200678 NA non-coding upstream 302744 89088665 ~ 89092313 (+)
G201044 NA non-coding downstream 5271 89427709 ~ 89427934 (+)
G201050 NA non-coding downstream 7703 89430141 ~ 89430418 (+)
G201061 NA non-coding downstream 20024 89442462 ~ 89442713 (+)
G201068 NA non-coding downstream 30711 89453149 ~ 89453395 (+)
G201071 NA non-coding downstream 36424 89458862 ~ 89459088 (+)
G199223 hipk3 other upstream 1527090 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1858129 87535936 ~ 87536928 (+)
G198784 NA other upstream 1898322 87493623 ~ 87496735 (+)
G198575 NA other upstream 2244567 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 2355821 87037511 ~ 87039236 (+)
G202039 NA other downstream 1024680 90447118 ~ 90447573 (+)
G202185 NA other downstream 1294504 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1814587 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1943899 91366282 ~ 91543765 (+)
G203414 NA other downstream 2199563 91622001 ~ 91624293 (+)

Expression


Co-expression Network