Gene
RNA
| Item | Value |
|---|---|
| gene id | snx20 |
| gene name | snx20 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 89470379 ~ 89472518 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| snx20 | Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Orthologous to human SNX20 (sorting nexin 20). |
| description |
|---|
| sorting nexin-20 |
| id | name | namespace |
|---|---|---|
| GO:0007154 | cell communication | biological_process |
| GO:0035091 | phosphatidylinositol binding | molecular_function |
| id | description |
|---|---|
| K17931 | SNX20; sorting nexin-20 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021576253.2 | True | 1693 | mRNA | 0.48 | 3 | 89470379 | 89472518 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499234 | rbl2 | coding | upstream | 47941 | 89395057 ~ 89422438 (+) |
| ankrd27 | ankrd27 | coding | upstream | 267416 | 89168314 ~ 89202963 (+) |
| tdrd12 | tdrd12 | coding | upstream | 308287 | 89132933 ~ 89162092 (+) |
| LOC110502274 | immp2l | coding | upstream | 489940 | 88815803 ~ 88980439 (+) |
| tmem168b | LOC106561512 | coding | upstream | 711645 | 88750768 ~ 88758734 (+) |
| mphosph6 | mphosph6 | coding | downstream | 27994 | 89500512 ~ 89502349 (+) |
| LOC110499288 | LOC106561532 | coding | downstream | 83055 | 89555573 ~ 89577445 (+) |
| LOC110499364 | LOC106561540 | coding | downstream | 256422 | 89728940 ~ 89740218 (+) |
| LOC110499385 | LOC106561542 | coding | downstream | 300081 | 89772599 ~ 89793099 (+) |
| LOC110499409 | LOC100380677 | coding | downstream | 358404 | 89830922 ~ 89883245 (+) |
| G201071 | NA | non-coding | upstream | 11291 | 89458862 ~ 89459088 (+) |
| G201068 | NA | non-coding | upstream | 16984 | 89453149 ~ 89453395 (+) |
| G201061 | NA | non-coding | upstream | 27666 | 89442462 ~ 89442713 (+) |
| G201050 | NA | non-coding | upstream | 39961 | 89430141 ~ 89430418 (+) |
| G201044 | NA | non-coding | upstream | 42445 | 89427709 ~ 89427934 (+) |
| G201041 | NA | non-coding | downstream | 21 | 89472539 ~ 89473610 (+) |
| G201040 | NA | non-coding | downstream | 3472 | 89475990 ~ 89476606 (+) |
| G201045 | NA | non-coding | downstream | 34109 | 89506627 ~ 89508008 (+) |
| G201081 | NA | non-coding | downstream | 57231 | 89529749 ~ 89530222 (+) |
| G201082 | NA | non-coding | downstream | 57973 | 89530491 ~ 89530766 (+) |
| G199223 | hipk3 | other | upstream | 1602412 | 87866877 ~ 87867967 (+) |
| G198811 | LOC106561481 | other | upstream | 1933451 | 87535936 ~ 87536928 (+) |
| G198784 | NA | other | upstream | 1973644 | 87493623 ~ 87496735 (+) |
| G198575 | NA | other | upstream | 2319889 | 87150202 ~ 87150490 (+) |
| G202039 | NA | other | downstream | 974600 | 90447118 ~ 90447573 (+) |
| G202185 | NA | other | downstream | 1244424 | 90716942 ~ 90717421 (+) |
| LOC110499641 | LOC106561583 | other | downstream | 1764507 | 91235465 ~ 91239737 (+) |
| mgat4c | LOC106561589 | other | downstream | 1893819 | 91366282 ~ 91543765 (+) |
| G203414 | NA | other | downstream | 2149483 | 91622001 ~ 91624293 (+) |
