Gene
RNA
| Item | Value |
|---|---|
| gene id | lsm14aa |
| gene name | LOC106561533 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 89538498 ~ 89555355 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein LSM14 homolog A-like isoform X5 |
| id | description |
|---|---|
| K18749 | LSM14, RAP55, SCD6; protein LSM14 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021576401.2 | False | 4515 | mRNA | 0.45 | 10 | 89538498 | 89555351 |
| XM_021576392.2 | False | 4601 | mRNA | 0.46 | 11 | 89538498 | 89555353 |
| XM_036958516.1 | False | 4568 | mRNA | 0.45 | 11 | 89538498 | 89555353 |
| XM_036958508.1 | True | 4600 | mRNA | 0.46 | 11 | 89538498 | 89555355 |
89,534,000
89,536,000
89,538,000
89,540,000
89,542,000
89,544,000
89,546,000
89,548,000
89,550,000
89,552,000
89,554,000
89,556,000
89,558,000
89,560,000
89,562,000
89,564,000
89,566,000
89,568,000
89,570,000
89,572,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gpia | LOC100196524 | coding | downstream | 9694 | 89506624 ~ 89528804 (-) |
| hsd17b2 | hsd17b2 | coding | downstream | 32513 | 89502075 ~ 89505985 (-) |
| LOC110499252 | papd5 | coding | downstream | 45328 | 89477010 ~ 89493170 (-) |
| LOC110502285 | sall1 | coding | downstream | 94854 | 89437266 ~ 89443782 (-) |
| LOC110499228 | LOC106561526 | coding | downstream | 329913 | 89205876 ~ 89208585 (-) |
| LOC110499327 | LOC106561534 | coding | upstream | 22439 | 89577794 ~ 89587145 (-) |
| LOC110499346 | vps4a | coding | upstream | 51899 | 89606837 ~ 89609890 (-) |
| LOC110499336 | LOC106561536 | coding | upstream | 54882 | 89610237 ~ 89709230 (-) |
| LOC118944147 | NA | coding | upstream | 92107 | 89647462 ~ 89647514 (-) |
| tph2 | tph2 | coding | upstream | 184834 | 89740189 ~ 89748145 (-) |
| G201515 | NA | non-coding | downstream | 70350 | 89463194 ~ 89468148 (-) |
| G201506 | NA | non-coding | downstream | 86847 | 89451242 ~ 89451651 (-) |
| G201489 | NA | non-coding | downstream | 107207 | 89431061 ~ 89431291 (-) |
| G201485 | NA | non-coding | downstream | 116126 | 89420497 ~ 89422372 (-) |
| G201540 | LOC106561532 | non-coding | upstream | 2944 | 89558299 ~ 89559038 (-) |
| G201544 | NA | non-coding | upstream | 18599 | 89573954 ~ 89577425 (-) |
| G201561 | NA | non-coding | upstream | 39237 | 89594592 ~ 89595015 (-) |
| G201627 | NA | non-coding | upstream | 120676 | 89676031 ~ 89677465 (-) |
| G201667 | LOC106561542 | non-coding | upstream | 220144 | 89775499 ~ 89777092 (-) |
| G198912 | NA | other | downstream | 2212029 | 87322139 ~ 87326469 (-) |
| G198342 | LOC100194703 | other | downstream | 2634542 | 86903036 ~ 86903956 (-) |
| G197554 | NA | other | downstream | 3574833 | 85959845 ~ 85963665 (-) |
| G197498 | slc25a18 | other | downstream | 3695005 | 85831239 ~ 85843493 (-) |
| LOC110498022 | LOC106561385 | other | downstream | 4898742 | 84596433 ~ 84910878 (-) |
| G202279 | NA | other | upstream | 822202 | 90377557 ~ 90441425 (-) |
| G203915 | rassf9 | other | upstream | 2033857 | 91589212 ~ 91591049 (-) |
| G204024 | NA | other | upstream | 2231832 | 91787187 ~ 91788103 (-) |
| LOC110499897 | LOC106573100 | other | upstream | 2842705 | 92398054 ~ 92443838 (-) |
