LOC110499327 (LOC106561534)


Basic Information

Item Value
gene id LOC110499327
gene name LOC106561534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89577794 ~ 89587145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576411.2
GGGCCAGAGAAGAGAATACTACAGGACAGAGAAGATCTGCGCGACGTATCTGAGCGGAACCTATCATTTTATAGTTTAATTGATATTGACCGTAGCCTCCTTTAGTAGACATTGTATCAACAAGTTACATTTATGTTTTTTTAATACACACTGCCAGTTATTAACACTGGTAAATCCGTTGAGTGAATTATGACACTAATCTGATACGGAGCAAGATTGAACCGAACACCGTTACCCGTGCAGCAGACCAGACCGCTCTCCGTTGGAAATAAACCACGATATATTTGGTAAAATCTTAAAATCAAATAGACATGTGAAATAAGAAACAGGGGATCTCATTTTCATCTTGAAACGAGTTGAGACGATAGATAAAAAGCTGCTCTATTGTAAACTAATCCTTGCCCTTCGGGCGTTTGAATAGCCCAGGGCAAGAATTCTACTAGCCCTCCTTTTATTTAGAGACGGACTGGCTTTCTTCTCATAAAACTCAACGGATTCATCATATCAGAAAAAGCAAGGCTCGGACAAAGACGGATATAAAGCAAACGACGACACAACTGACATAAACAGAGATAAAATCGGAAGGGAGAAGAGATTCCTATGTCTTCTGTATCCGTGTCCTCCCAGGAGGGAAGGAGTATGTCCAGGATGTCTATGAGTCGTTCTCCAGTTTCTCCAATGAATGCCCAGGGCATCCCATCACCTGCCCAGCTGACTAAAGCCAATGCCCCGGTCCACATTGATGTGGGAGGACACATGTACACCAGCAGCCTGGGGACTCTCACTAAATACCCAGAGTCTAGAATCAGTCGTCTGTTTAATGGAACAGAGCCCATTGTACTGGACAGTTTGAAGCAGCACTACTTCATCGACAGGGATGGAGACATATTCAGATACATTCTCAGCTTCCTCAGGACCTGCAAACTACTGCTCCCAGAGGACTTCAAGGACTTCCCCCAGCTATACGAGGAGGCTCGCTACTACCAGCTGACACCCATGGTCCGCGAGCTGGAGCGCTGGCTGACAGAGCGGGAGGGCCAGAAGAGCCGGCCTTGCGAGTGCCTGGTGGTCCGAGTGACCCCCGACCTGGGTGAGAGAATTGCCCTCAGCGGGGAGAAGGTGCTCATTGAGGAGATCTTCCCCGAGACCGGAGACGTCATGTGTAACTCGGTGAACGCCGGCTGGAACCAGGACCCCACACATGTTATCCGTTTTCCGCTCAACGGCTACTGCAGGCTCAACTCAGTTCAGGTTCTGGAGAGGTTGTTCCAGAAGGGCTTCAGCATGAGGGCGTCGTGTGGTGGCGGAGTTGACTCCTCCCAGTTCAGCGAGTACGTCTTGTGTCGCGAGCTCCACAGGGGTCAGTCCATcggcaccaccaccactatccggATCAAACAGGAGCCTCTGGACTAGGTCAGGAGGAACAGAGGGGCCCTTGAGATAAGATGTTCAACAACCCCGGTGCTCATCTCCAGGTCCTATCTACACAAAACACTGAAGGAGGACTCTTTATGCTTGGGAATATCATGTGCCAATGGCAATGTTTATTGGGCAAGCGAGATGTGAGAAGGTTGTGATTCTATTGAGACTCAAATAGTCTATGGAACTCTTTCTGCTGCGGTCAGGCACCTCTGGACTATTGACAACTAGCAGGAACAAGGAAATAGCTCCAGTAATATGGTGCTCAGGTCCAGCTTAGGTTTCACTGGGGACTCCTGTTCAAGCCTAAGGATGGGTCTACTGGTATGCCAGATGACCTCCAGTTCAGAGACATTGTCTGCGTTTATactggcagcccaattctgatatttgcCCAATTATTGAAAAAGATtcgatctgattggtcaaaagaccaataaatgtcaaaagatcagaattgagctgcctgtgtaaacacagtcaAAAATGGCCATGTCCTGCTCTGCCACAGGAAGAACATGGCTCTGTGTGTTTGCTGCATTTCTTGACAACTTCCTACACTGTTCAATCTGAATAggtcatatactgtatgtgtaggtattTGTACAATTAAATGTTAAATGGACAA

Function

NR:

description
BTB/POZ domain-containing protein kctd15-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576411.2 True 2050 mRNA 0.47 5 89577794 89587145

Neighbor

gene id symbol gene type direction distance location
lsm14aa LOC106561533 coding downstream 22439 89538498 ~ 89555355 (-)
gpia LOC100196524 coding downstream 48990 89506624 ~ 89528804 (-)
hsd17b2 hsd17b2 coding downstream 71809 89502075 ~ 89505985 (-)
LOC110499252 papd5 coding downstream 84624 89477010 ~ 89493170 (-)
LOC110502285 sall1 coding downstream 134150 89437266 ~ 89443782 (-)
LOC110499346 vps4a coding upstream 20109 89606837 ~ 89609890 (-)
LOC110499336 LOC106561536 coding upstream 23092 89610237 ~ 89709230 (-)
LOC118944147 NA coding upstream 60317 89647462 ~ 89647514 (-)
tph2 tph2 coding upstream 153044 89740189 ~ 89748145 (-)
LOC110499378 LOC106561541 coding upstream 164598 89751743 ~ 89763372 (-)
G201544 NA non-coding downstream 369 89573954 ~ 89577425 (-)
G201540 LOC106561532 non-coding downstream 18756 89558299 ~ 89559038 (-)
G201515 NA non-coding downstream 109646 89463194 ~ 89468148 (-)
G201506 NA non-coding downstream 126143 89451242 ~ 89451651 (-)
G201561 NA non-coding upstream 7447 89594592 ~ 89595015 (-)
G201627 NA non-coding upstream 88886 89676031 ~ 89677465 (-)
G201667 LOC106561542 non-coding upstream 188354 89775499 ~ 89777092 (-)
G201664 LOC106561542 non-coding upstream 191957 89779102 ~ 89780286 (-)
G201673 LOC106561542 non-coding upstream 194649 89781794 ~ 89785665 (-)
G198912 NA other downstream 2251325 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2673838 86903036 ~ 86903956 (-)
G197554 NA other downstream 3614129 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3734301 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4938038 84596433 ~ 84910878 (-)
G202279 NA other upstream 790412 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2002067 91589212 ~ 91591049 (-)
G204024 NA other upstream 2200042 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2810915 92398054 ~ 92443838 (-)

Expression


Co-expression Network