LOC110499336 (LOC106561536)


Basic Information

Item Value
gene id LOC110499336
gene name LOC106561536
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89610237 ~ 89709230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576422.2
AGCAAGAAATAGAAGCAGTGAGATGCCGCGCTGCGCTCCACTCACACATTTGGCAAACCGCCCTTGTAGGCTAGCCTACTTCTCTCACCCTCGAGCTACTCTCCAATCCTCGCTAGACCTAATAAGTGAATTCAACAGACAACCATGGAATGGAACGCATGGCAAGAAGCAGTAAGGTtcgttttttaaacattttgcaaAGATATGCGAAAGCTGAGTTTTCAGTCGTGATGCTGAGAGACATTGTTGTAAATCAACAACCTCGAGCGAGAGGAAATTGACTTTCGACGGACAGGCGCAAACTCTTCTCAGCTTCAAAGACTGATGGTTATTGCTAAAGAGCAGGTTCCCGTGGCAGGGCTGAGGAGGGATGCTCTTGGGGGAGTGCAGTAGTACCAGTAGGTTGCTGGAGGCTCTGTGTGGCAAGAGAAGGGTGCTTGTGTCGGCCATGAAGCTGCCCTGCTCCTTCTACTGTTCCCTCTGGTTCCTCCTGCTCCTGGGGGCCGCGTCCTTACTCCTCCTAGTCCACCTCCAGGGCCTCTCAGACATGCTCCAGCAACAGACCCCAGgtGCGAAGTTCATGGTTGCTCCAAGGTGGCCAATTCAAAAGGATCAGCCCTCAGACAGTGCAGTCTTTGAAGGCATCAACCTAGGTGGAGGTTTCCATGGAGCTCCAGGGGAAGAGATATCCTCTAACCCCAGCCTCCCTAGTCCTAGCCCCAGGCAGCCCCCTTCCTTACAGTGGCTGCcccacccatccaccccaacCTCCGGAGACCAACAGGCCGAAAGCCCCAGGCCACCGGTCACTAAACGCCACAGGAAGCTGCTGTTAAAGAGCGGTTCTGTAATTCCTAGTGGTGCCCCCCCTGGTGAGGAGGACCGTAAGTTACAGGGCATGGCTCATACCCAAGTGTCCCGCCACCACCTGCTGAGGGAGGTCTGCACCAAATACCAGCCGGGCGTCACCGAGCACCCCATCTCCAGCCGGCAGGTGTCCCGGGTCTACGTGGAGGATAGGTCAGGGCTGCTGTACTGTGAGGTGCCCAAAGCTGGCTGCTCCAACTGGAAGCGGGTGCTGATGGTCCTGGGAggcagtgccacctccacgcacggCATCGCCCACGACGACGCCCACTATGCCAACCAGCTCCGCCGACTGGACACCTACAGCCAGGCGGGCGTGGCAGAGCGCCTCCGCTCCTACACCAAGGTCCTCTTCGTACGGGAGCCCTTCGAGAGGCTGGTGTCGGCCTTCCGCGACAAGTTCGAGAGCCCCAACTCGTACTACCACCCGGTGTTTGGCCGGCCCATCATCTCCCGGTACCGGGCCAACGCCTCGCTCTCCGCCCTGAGGACCGGCGCCGGCGTCACCTTCAGGGAGTTTGTCCAGTACCTGTTGGATGTGAGGCGACCCGTGGGCATGGACATCCACTGGACGCCGGTCAGCCAGCTCTGCAGCCCCTGCCTGCTGCACTACGACTTCATCGGGAAATTCGAGAGCCTGAAGGAGGAGGCCAACTTCCTGCTACGGAGTATCGGGGCACCTAGCAACCTCACTTTCCCTGACTTTAAAGACAGGAACCCCAAAGCAGAAAGGACTTCTTACACCATTACCCAGAGATATTTTGAACAGTTGAATACCACGGAGAGACAGAGGGCCTATGACTTTTATTACATGGATTATCTGATGTTTAAATACCCCAAACCCTATAAAGACCTGTACTGAAGTAGTGGCTGGATTGACATGT

Function

NR:

description
carbohydrate sulfotransferase 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576422.2 True 1751 mRNA 0.56 5 89610237 89709230

Neighbor

gene id symbol gene type direction distance location
LOC110499346 vps4a coding downstream 1659 89606837 ~ 89609890 (-)
LOC110499327 LOC106561534 coding downstream 23092 89577794 ~ 89587145 (-)
lsm14aa LOC106561533 coding downstream 54882 89538498 ~ 89555355 (-)
gpia LOC100196524 coding downstream 81433 89506624 ~ 89528804 (-)
hsd17b2 hsd17b2 coding downstream 104252 89502075 ~ 89505985 (-)
tph2 tph2 coding upstream 30959 89740189 ~ 89748145 (-)
LOC110499378 LOC106561541 coding upstream 42513 89751743 ~ 89763372 (-)
LOC110499401 lgr5 coding upstream 83889 89793119 ~ 89820854 (-)
LOC110499439 LOC106561546 coding upstream 192277 89901507 ~ 89922720 (-)
LOC110499460 LOC100136366 coding upstream 335466 90044696 ~ 90125003 (-)
G201561 NA non-coding downstream 15222 89594592 ~ 89595015 (-)
G201544 NA non-coding downstream 32812 89573954 ~ 89577425 (-)
G201540 LOC106561532 non-coding downstream 51199 89558299 ~ 89559038 (-)
G201515 NA non-coding downstream 142089 89463194 ~ 89468148 (-)
G201506 NA non-coding downstream 158586 89451242 ~ 89451651 (-)
G201667 LOC106561542 non-coding upstream 66269 89775499 ~ 89777092 (-)
G201664 LOC106561542 non-coding upstream 69872 89779102 ~ 89780286 (-)
G201673 LOC106561542 non-coding upstream 72564 89781794 ~ 89785665 (-)
G201671 LOC106561542 non-coding upstream 79656 89788886 ~ 89789501 (-)
G201697 NA non-coding upstream 122924 89832154 ~ 89833151 (-)
G198912 NA other downstream 2283768 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2706281 86903036 ~ 86903956 (-)
G197554 NA other downstream 3646572 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3766744 85831239 ~ 85843493 (-)
G202279 NA other upstream 668327 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1879982 91589212 ~ 91591049 (-)
G204024 NA other upstream 2077957 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2688830 92398054 ~ 92443838 (-)
G205192 NA other upstream 3252814 92962044 ~ 92962934 (-)

Expression


Co-expression Network