LOC110499364 (LOC106561540)


Basic Information

Item Value
gene id LOC110499364
gene name LOC106561540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89728940 ~ 89740218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576456.2
TTCACCAGAAAAGTGTAGGAGGAAGTAGAATGTCCCGTTATGAATCTCAAATCTAGTTATGGTTCCTTATTCAAGGTGAAAGCATCATCATATATTTGCTGAAATAATTTATAGATCCTGCAGTGTTCCAGGCTGTCAGGTTGTGTGTGGCGTGGCAGTGAGATGGAGAACCATGCAACAGCAGGGGCCGCCGTGGATGCATGCGGAGTGGACCAACGTAGCGATGAGTATCGACTGCTCATGGCTTACTGTGGCAAAAGGAAGAGGCAGCGGTCTGGCCCAATGCCTCAATGTCAAGGCCTCATTCAAAAAGAAGGTCCTCCTCCATCCAGACATAATGCTAGATTTTATGACACCGGTCCCATACACCGCAAATTTCAAGGTTGTGCTCCGTCCAGACATGGCCTAGTGGCAGcagCTACTGGAGCTGCAGGAGGAGAGGGCAATACCTTGAATGGAGTAGCAGACAGGTTGACTCAGATTGCAGACTCTGTGCAGATCACAACAGACGACATAGAGTCAGACGGGACAGAGGATCAACATGATGTCATCCGAAGACTAGTGGAGTTGTTGAAGGCATCTGGAGACAAgctgaatgaggagATCATGAGTAACCACATCTTGCAGAGGCACCTCCAGACTTCCTTCACTTACAGTCTGTTTGAGACGGTGACCTCCACCCTGCTCCAGGGAGTGACGGGGGTAGAGGGTGATGGTCCTGTAGCCCGGACAGGCTGCCCTGCCcctgagaaggaggagagggtccAGAGGGAGCAGATTGCCCTGGCCTGCGAGGTGACTAGCAAGCTATCTGCCCTGGACCTCCACCCCATGAGCCGGGCCATGGGCTTTGGGACACGCTACCTCCAGGAGCACCACACGACCTGGGTGAAGAAACACGGGGGCTGGAATAACGTGTTTGACAGTGAAGACACTGATTAGACCTGTCAGGCATTTCAGCTGCTTCAACCAGCCATGGGAACTCATTTACATTTTGCTGAATATTACATGTTTAATTTGCTCCTAAAACTATGGATTCACTTACTGTACTTACATTAATAAGGCTGTTTCTTAGTGAAACTGACTACATTTTGTTCATGTTAAAGAGATCCTTCAAAAGTTATGTACTGTTAGATATTGAACATTGGTCCCAATTTAGACTTGAAATAAACAGACTTAACATGGACTTAAGTCTCATTAGAACATGGACTAAAGTATTTTTTTATTGACTTAAGTCCATGTTAAGTCACCTTATCTCAAGTTTTTAAATATTAGGGCCTATACTGAATGTATAGCTTTCAAGATGTTTGGGTTTATCTTAacctctaaaatgacattgaacCTGTGATTTATGAATGAACTGCTCAGTGTGGATTATCAATGAATTGCCTTGAAATGGTTGTATGTGGGGATAAATCTAATGGTTAATACATTTCTGCAGCCAGTATGTGATGAAAGTAACAATAATCATCTTTAGATTGTTAGTTTTGGAAATTGTGTATGAACCTCTATCccacaaacatttttttttatattacaACATAAAGTCGTGTTAGTGGGATATGTTGCTATTTCAGTGGTGTTACTGTGATAAAGTACAAATTATTTGATACCATAAAGGAATTAAAGATTTATTTTGTCATTTAA
>XM_021576474.2
TTCACCAGAAAAGTGTAGGAGGAAGTAGAATGTCCCGTTATGAATCTCAAATCTAGTTATGGTTCCTTATTCAAGGTGAAAGCATCATCATATATTTGCTGAAATAATTTATAGATCCTGCAGTGTTCCAGGCTGTCAGGTTGTGTGTGGCGTGGCAGTGAGATGGAGAACCATGCAACAGCAGGGGCCGCCGTGGATGCATGCGGAGTGGACCAACGTAGCGATGAGTATCGACTGCTCATGGCTTACTGTGGCAAAAGGAAGAGGCAGCGGTCTGGCCCAATGCCTCAATGTCAAGGCCTCATTCAAAAAGAAGGTCCTCCTCCATCCAGACATAATGCTAGATTTTATGACACCGGTCCCATACACCGCAAATTTCAAGGTTGTGCTCCGTCCAGACATGGCCTAGTGGCAGCTACTGGAGCTGCAGGAGGAGAGGGCAATACCTTGAATGGAGTAGCAGACAGGTTGACTCAGATTGCAGACTCTGTGCAGATCACAACAGACGACATAGAGTCAGACGGGACAGAGGATCAACATGATGTCATCCGAAGACTAGTGGAGTTGTTGAAGGCATCTGGAGACAAgctgaatgaggagATCATGAGTAACCACATCTTGCAGAGGCACCTCCAGACTTCCTTCACTTACAGTCTGTTTGAGACGGTGACCTCCACCCTGCTCCAGGGAGTGACGGGGGTAGAGGGTGATGGTCCTGTAGCCCGGACAGGCTGCCCTGCCcctgagaaggaggagagggtccAGAGGGAGCAGATTGCCCTGGCCTGCGAGGTGACTAGCAAGCTATCTGCCCTGGACCTCCACCCCATGAGCCGGGCCATGGGCTTTGGGACACGCTACCTCCAGGAGCACCACACGACCTGGGTGAAGAAACACGGGGGCTGGAATAACGTGTTTGACAGTGAAGACACTGATTAGACCTGTCAGGCATTTCAGCTGCTTCAACCAGCCATGGGAACTCATTTACATTTTGCTGAATATTACATGTTTAATTTGCTCCTAAAACTATGGATTCACTTACTGTACTTACATTAATAAGGCTGTTTCTTAGTGAAACTGACTACATTTTGTTCATGTTAAAGAGATCCTTCAAAAGTTATGTACTGTTAGATATTGAACATTGGTCCCAATTTAGACTTGAAATAAACAGACTTAACATGGACTTAAGTCTCATTAGAACATGGACTAAAGTATTTTTTTATTGACTTAAGTCCATGTTAAGTCACCTTATCTCAAGTTTTTAAATATTAGGGCCTATACTGAATGTATAGCTTTCAAGATGTTTGGGTTTATCTTAacctctaaaatgacattgaacCTGTGATTTATGAATGAACTGCTCAGTGTGGATTATCAATGAATTGCCTTGAAATGGTTGTATGTGGGGATAAATCTAATGGTTAATACATTTCTGCAGCCAGTATGTGATGAAAGTAACAATAATCATCTTTAGATTGTTAGTTTTGGAAATTGTGTATGAACCTCTATCccacaaacatttttttttatattacaACATAAAGTCGTGTTAGTGGGATATGTTGCTATTTCAGTGGTGTTACTGTGATAAAGTACAAATTATTTGATACCATAAAGGAATTAAAGATTTATTTTGTCATTTAA

Function

NR:

description
uncharacterized protein LOC110499364 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576456.2 False 1647 mRNA 0.43 6 89728940 89740218
XM_021576474.2 True 1644 mRNA 0.43 6 89728940 89740218

Neighbor

gene id symbol gene type direction distance location
LOC110499288 LOC106561532 coding upstream 151495 89555573 ~ 89577445 (+)
mphosph6 mphosph6 coding upstream 226591 89500512 ~ 89502349 (+)
snx20 snx20 coding upstream 256422 89470379 ~ 89472518 (+)
LOC110499234 rbl2 coding upstream 306502 89395057 ~ 89422438 (+)
ankrd27 ankrd27 coding upstream 525977 89168314 ~ 89202963 (+)
LOC110499385 LOC106561542 coding downstream 32381 89772599 ~ 89793099 (+)
LOC110499409 LOC100380677 coding downstream 90704 89830922 ~ 89883245 (+)
LOC110499418 LOC106561545 coding downstream 143139 89883357 ~ 89894419 (+)
LOC110499430 LOC106561547 coding downstream 184073 89924291 ~ 89929501 (+)
LOC110502295 LOC106561548 coding downstream 196928 89937146 ~ 90043824 (+)
G201142 NA non-coding upstream 12523 89622891 ~ 89716417 (+)
G201176 NA non-coding upstream 51615 89675961 ~ 89677325 (+)
G201087 NA non-coding upstream 193067 89535492 ~ 89535873 (+)
G201086 NA non-coding upstream 193450 89535201 ~ 89535490 (+)
G201085 NA non-coding upstream 195337 89533363 ~ 89533603 (+)
G201235 NA non-coding downstream 66707 89806925 ~ 89807763 (+)
G201241 NA non-coding downstream 81555 89821773 ~ 89822363 (+)
G201243 NA non-coding downstream 83478 89823696 ~ 89876082 (+)
G201267 NA non-coding downstream 158514 89898732 ~ 89898970 (+)
G199223 hipk3 other upstream 1860973 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 2192012 87535936 ~ 87536928 (+)
G198784 NA other upstream 2232205 87493623 ~ 87496735 (+)
G198575 NA other upstream 2578450 87150202 ~ 87150490 (+)
G202039 NA other downstream 706900 90447118 ~ 90447573 (+)
G202185 NA other downstream 976724 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1496807 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1626119 91366282 ~ 91543765 (+)
G203414 NA other downstream 1881783 91622001 ~ 91624293 (+)

Expression


Co-expression Network