LOC110499378 (LOC106561541)


Basic Information

Item Value
gene id LOC110499378
gene name LOC106561541
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89751743 ~ 89763372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576488.2
TGCGCCTGCGCTGCTACGGAAATGCGGAAGATGACTTGTCACTGTTGTTGTGGAAGCTGTCAGGCACGTGAGCTGTGCTACGTCGTCGTAAGTGGTAATAGGCGATATGTCGGCTGATACTCCTCCCAAGGTGCTATTTGAACATGAAGGTGTTTTCATTCACTCAAATACTGAAGCCAGTGAAGACCAAGATCTGCTTGTTTCTGGGTTCCTACGTATTATTGATAAGGATGGTGAAATCATTGTGGAATACAAACCCTTGGAGGACACTGTTGATCCATCCAACATGCTCTGTGCTGGCAAGGATTCCAGCTCAGTGATGGAGTGGGCCTATTGTCCTGGGGAGGAGAGGTCGTCACCTCAGCAGGCCGTGGTGCTGGAGCAGCAGCAGAGCTACGAGACCGAGTGGGACATGATCAACGCAGTCTCCTTTCCCAAGAGGAAACCCTGCTCCAACGGAGAGGGTGCATTGAACCACACACATGAGAAAAGCAAGTGGTCCTTCACCTTCAGTGTGTGGGACTTGAGGTCTATCACAGTGAAGGAGGAAGGCTGGTCCCGTCTGGTGTTCGGAATGAAGGAGCCACCCACCCTACTGCCATCCCTCCACTTCCACCTGGGGGGCAGTGAAGGCTTCATTGACTGCCTGAGGAGATACATCATAATCACAGAGGCCCCAGATGATGAAACCTGCCTGCTGGTCAGCACTCCCAACCGAGCTCTCTCTCAGTCCTTCGAGAACCTTTTGGACGACAACAACTACGGCCTTGTTACTAAGCTGAAGAAGGATCCCTATGTGACAACGTTGGGCGGCTTCTCCAAGGTCACCAACTACATCTTCGATGCGTTCCGCGGCCCAgagctggagcagcagcagcggAAGCCCCATGAGGAGGTAGCTGACCTGGACATCCTGGGACTGGGAGAGGTCATCCCTGGCCTGGAGATCAACCAGCAGGAGGAACCTGGCTTTGAGGTTATCACCAGGATGGACCTGGGCGCCAGGCCAGAGGTAACAAGGAGGGAGCCACTGTCTGCAGAGGACTGGGCTAAGCACCAGGACCAGGAAGGAAGGGTGGAAAATGTCCCTCAACTCAAGAAAATCATATTCAAAGGCGGCTTGTGCCATGCGGTGAGGAAAGAGGCCTGGAAGTTTCTGCTGGGGTATTACACCTGGGACAGCACCTACGACGAGCGGAAAGGCCAACAGAGGAGGAAAACGGATGAGTACTTCAGGATGAAGCTCCAGTGGAAGTCGGTGAGTGAGGAGCAGGAAAGGAGAAACTCCAGGTTAAGAGACTGCAGGAGCCTGATAGAGAAGGACgtgaacagaacagacagaaccaACAGGTTCTATGAAGGCATAGACAACCCAGGCCTGGTGTTACTACATGACGTCTTGATGACGTACTGCATGTATGATTTTGATCTGGGTTATGTTCAGGGTATGAGTGACCTCCTCTCCCCGATCCTCTATGTGATGGACAACGAGGTGGATGCCTTCTGGTGTTTTGTCTCCTTCATGGATCAAATGcaCCAGAACTTCGAAGAGCCGATGCAGGGCATGAAGACTCAGCTGATCCAGCTCAGTACTCTGTTGAGGCTGCTGGACCTGGCCTTCTGGAACTACCTCGAGTCACAGGATTCAGGTTACCTGTATTTCTGTTTCCGGTGGTTACTGATCCGCTTCAAGAGGGAGCTCAGTTATCCAGATGTCCTTCGTCTGTGGGAGGTCATGTGGACTGGCCTGCCCTGCCAAAACTTCCATCTGCTGGTGTGCTGTGCCATCCTAGACTCAGAGAAAAGGAAAATCATGGAGGAAAACTATGGCTTCAATGAGATCCTTAAGCACATCAATGAACTATCAATGAAGCTGGACATTGAAGAAATCCTTCACAAATCAGAGGCTATTTGTATGCAAATCAGAAGTTGTAAGGATTTGCCTTATTCAGTAAGTGAGATCCTGGGATTCAACACAGAAAGCAAATTTCCCAGATTAGAAGGGAGGGAGTTTGGAACTCTTGATTCCCCCAGACCCACACAAAGACAGGAGGTCTTCTCTAATGGTCACAACAGACATTACAGAGAACCCCCTACTCACAACGGCTGCAAAGTCTCCTTCATATCATAGTGAACAATATCATTCACACAGACTTTGCAATGTCCACATACCAGAAAGAGTATTTTGGATTCAGTTATTGGATAAGTTGGTAACTGAAACCAGTTTATCAAGTAACTATAAGAAGAAATTTGAAGAGAAAAGaatgaaaaaaatgatttaaattTTTTTGTACCATATTGTCTTTCATTGAAATGGTAAGTCATTCCTTCAATCCTTGCTAAGGATATTTTGTAAAGATGGGCAAGGTGAGTTTGCATTGTAAAGTTATAATGTGCTGTTTTTTATTTAAACTATAACCTTTTCCTGAGTCATGCGCACAAGTATTAAAATCTAGTCCTGGGATTTCAATGTTTATTGATTCAAATTTTGAAAAGTTAAGGAAAGGCTTACAGAGTTAAGATTTGTCCAAATATGAATTTGATAGTATATGACAAAAGGCTGTACAATATGTGTTGTCTTGAGGCTCTGTGATAATAAGACACTTTTGAAGATTAAAATATTTAGAACAAAACAAAAACCAACATGTCCTTGTTACTCAGCTTTACCAGTgaattcaaataaaaaatatagccTTTGATTGTGTACTCAAACATCAGTACTAATGCGTTTATTTAGGTCCATAAGATTGGACCTTTTCTTAGTGATGAAAGATTTCATTTTAACTCTCATTTCATATGTATCTGGTACTGTATTGATAAAGCCTCTTGAGTAGAAGGATCCGGTCCCACCTCGTAGACGTGGCCCAAAAATACTATTTGAGCAAGGTTGGGTCCAGTCCACCCACATCACTTGTATGTAACATTTTCCTGGAAGACTTCCTTTGACCATATTTGGCAAAAACTCAAATTGATTTTTGGGCTCCAAAATATCAATGGTATTACAATTTTGTTGACTGTTTATACCATAGTATTAAAAAATGGTTTTGCTTGTTCTCCAACTATTTTAATTGTGGACTGTCTATCTGTCCCAGGAGGAAAACAGTAGTGAGTTCTTCAGAACTCATTGAGTTGTGGACTATTACTTAAGGCAATAAAAGCAATCCTTTTAA

Function

NR:

description
TBC1 domain family member 15-like

GO: NA

KEGG:

id description
K20168 TBC1D15; TBC1 domain family member 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576488.2 True 3170 mRNA 0.45 17 89751743 89763372

Neighbor

gene id symbol gene type direction distance location
tph2 tph2 coding downstream 3598 89740189 ~ 89748145 (-)
LOC110499336 LOC106561536 coding downstream 42513 89610237 ~ 89709230 (-)
LOC118944147 NA coding downstream 104229 89647462 ~ 89647514 (-)
LOC110499346 vps4a coding downstream 143165 89606837 ~ 89609890 (-)
LOC110499327 LOC106561534 coding downstream 164598 89577794 ~ 89587145 (-)
LOC110499401 lgr5 coding upstream 29747 89793119 ~ 89820854 (-)
LOC110499439 LOC106561546 coding upstream 138135 89901507 ~ 89922720 (-)
LOC110499460 LOC100136366 coding upstream 281324 90044696 ~ 90125003 (-)
LOC110502310 st7 coding upstream 433859 90197231 ~ 90298528 (-)
LOC110499482 LOC100380720 coding upstream 537174 90300546 ~ 90321779 (-)
G201627 NA non-coding downstream 74278 89676031 ~ 89677465 (-)
G201561 NA non-coding downstream 156728 89594592 ~ 89595015 (-)
G201544 NA non-coding downstream 174318 89573954 ~ 89577425 (-)
G201540 LOC106561532 non-coding downstream 192705 89558299 ~ 89559038 (-)
G201515 NA non-coding downstream 283595 89463194 ~ 89468148 (-)
G201667 LOC106561542 non-coding upstream 12127 89775499 ~ 89777092 (-)
G201664 LOC106561542 non-coding upstream 15730 89779102 ~ 89780286 (-)
G201673 LOC106561542 non-coding upstream 18422 89781794 ~ 89785665 (-)
G201671 LOC106561542 non-coding upstream 25514 89788886 ~ 89789501 (-)
G201697 NA non-coding upstream 68782 89832154 ~ 89833151 (-)
G198912 NA other downstream 2425274 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2847787 86903036 ~ 86903956 (-)
G197554 NA other downstream 3788078 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3908250 85831239 ~ 85843493 (-)
G202279 NA other upstream 614185 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1825840 91589212 ~ 91591049 (-)
G204024 NA other upstream 2023815 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2634688 92398054 ~ 92443838 (-)
G205192 NA other upstream 3198672 92962044 ~ 92962934 (-)

Expression


Co-expression Network