LOC110499418 (LOC106561545)


Basic Information

Item Value
gene id LOC110499418
gene name LOC106561545
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89883357 ~ 89894419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576555.2
TCATCCCCGCGCGTGCGCAGTTCACCACATCGAAAATGATTGCTTCAAACTCTCGGAAGTTTAGCCAAGTTGCTGTGATGTAGctggccagctagctagctacatacatAACGTTAGCTAAAAGACGGTGCGACTAAGGGCAGGCCCACATTTTATGTTGGCATAGCAGATAAAGCATCATGACTGCTCCTCCTCAGCCTCGGAGGAAAGAACCAGGGATACTGGTGGCTGGATCTAGACATCAGATGGTGCTCTGAAGAAGCCATGGGAAGCTGCTTGAGCTGTCCAGAGAAGGAGTCAATCCCAGATAATCATCAAACCAAATTTAAGGTGATAAATGTCGATGATGATGGGAATGAGCTGGGCTCGGGTGTGATGGAGCTGACAGAGGCAGAGCTGGTCCTCCACACCCATCGCCGTGACGATGTTAGGTGGCCTTACATGTGCCTGCGTCGCTATGGCTACGACTCCAACCTCTTCTCATTCGAGAGCGGCCACCGCTGCAAGACGGGACCAGgGATCTTTGCCTTCAAATGTGTGCGGGCAGAGGAGATCTTCAATATGCTGCAGGAGGTAATGCACAGCCACAGCATCAGTGTGGTGGAGGAGGCCGTGCTGGAGGCCAACCACCAGTCTGCTCTGGGCTACTCTGTCCCCACCGTGCCCAATGGTGTCACCCGGATCCCTTCGGTGGGCGACACCCCCTCGCACCCCTCCACGCGCCACCCGTCTGTGGCCAGCACCCGCCTGCCCTCGGTGGGAGAGGAGTCCTCACACCCCCTGCTAGTGGCTGATGATGCGATCCACACCTATGTGAACACCACAGGTCTGCTGGATGACCAGCCTAGCCCTCTGACTGTTCCAGCCCCCCTGGACAGCCCCGACTCAGGCCAGTCCCAGTGTTCCCCTACACCCCCCCCTCCACGGGTAGCCAGACCAGAGCCTCTGCCCCCCATGCCCCAGCTCCAGGAAGAGCCCCAGGTACTGCTCGAGCCCCTGGGGGTGCGCTTCGTGCTGGGACCCACCCCTGTGCAGAAGAAGATGGCCAAGGGGAAGCAGTCTActgggggtggagatggagaggaggcagaggaggaccCAGAGTCCCCAGATCTCGGAGAGGGGGAGACAAACAGCCACACCGACACACACTGTGCCACAGAGGCCCCAGCCCTACTGGAGGGCCAGTCTCAGCCGCCCCACACACACTCCAACGGCACCTCTGTCGGGGTTACTGCCCCAATAACAGCCCCCCGCCTCCAACGCACGCCCCCCGACACCCTGCAGAATGTCAACAACTCAGCCCAGCGACGCACGGCCCTCTTGGACTATGAGAACCTCCCGGCTCTGCCGCCCGTTTGGGAGACCCGCAAGCCCAGCAACGAGGAGGTGGAGAACAATGGAGGCGGCCAGGGGGGGCTGAAGACGCCATCCCTCAACggctacaaccaccaccaccactcctacTCCCACCCCCTGTCAGCCTACCCCTCTCTTTCGGCCATGGAACCCTCCCACAACTACGTCAACACAGAGAATGTGACGGCTCCTCTCAGCGCCCGCTGTGCCCCCGACATGGTACGCCGCCGCACCGACGGACCCACCATCTTCAACTTTGACTTCCGCCGGCCGTTGGGGCTGCTGTGTCAGGAGCCTCCCAAGACGCTCAACTACATCGAGGTGGAGATGGAATCTACCACCACCTCTTCATCCGCAGCTGCCAAGGGTGCCTCCTCAGACACCAGCAATCCCCACACACCCCGCACCCCCACCTCGCCGCTGCCACCTACCACCCCCACGCGCCGCACCGAGCTCTACGCCTTCATTGACATCGAGCGCACCGCCGCCATGTCAAGCCTGCAGAAGGCTCGGCCGCGCGACGACGGAACGTCGAGGAAAACGCGGCACAATAGCACGGAGCTGCCCACCAAAAGCACTGTCTGACTGAACGGATCCTCCTTGCACCTTTTTCTACTATGAACCCCTttagaaaaaaaatatgaaaaaaatgtGAAGGCAGTCTACACAGGGGACTTTCTTAATAAACACAGGCCATGGAGACATTGGAAATGTATTCAAAGAGACTCCAGAAATCGGTCTTAAATGAGATTTAAACAGACTTTCTGTTGTGTGTGGTTGGTTACCAAAGTAGGTACTTACTTGCGATATACCAATTTATTCCTATGGTAATATAATACCTCTTCTCCTTCACTCATTCTTCAGTGCATTTGGGTTGTTTATTATGTTAATAAGACTGGACTGCATtcctcctcacccccccccccccccccccccccctttctattGGTACAAATCAGAATTTTTGAACAAAGCATTCCATTTAGCCATTTTGAATGATATGATTCACTACATGCATTGCTGCTGTAATTTCAGTATCTGAGGATTACATGGTACACTACATGTTTCTGACTATGTACATTAGATCCTGGCACAATAAATGTCTGTTCTGTTTTTATGTA
>XM_021576565.2
TGGAGCTGACAGAGGCAGAGCTGGTCCTCCACACCCATCGCCGTGACGATGTTAGGTGGCCTTACATGTGCCTGCGTCGCTATGGCTACGACTCCAACCTCTTCTCATTCGAGAGCGGCCACCGCTGCAAGACGGGACCAGGATGAGGactggtggtgagagagagggaggggtgggggttgTGACAGGGGGGGTGGTTACTATGGGTTCCGGTAAGTCACACTCCTTGTGTTCGCACCTCATGCTGTGATGATGAATGACATAATACTGTGATTACCAGAAATATTAGTCAGAAATATAATCATTATGGCATCGTTGACTTAAGTATGGATTGGATGTCCATTTTAGTGATTCTTTTTCTGTGGTTACAGTATTGATGCCTGTGTCTGACTCTGTGTGGTGTTGTGCTGTGAGAgggagtttttttgtttgttttgttgcaCAAGCatagctgtgtgttctgtgttttctCTTTGTGCATTATGCAGTGTTAGTTAGTTTGTCTCTATTGTTATGCTGTACTTATGGTAgttcaaataaaattttatttgtcacacatacacatggttagcagatgttaatgcgagtggagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatctaacctaacaattccacaactactacctagtaaagggataaagaatgtgTTCCTTATTGATATTTTGCTATCTTTTCCTTGTCCTATATCTCTACCACTCTGTTGCCTTCCCCTACCTAGTCCATTTAGATCAGTGATCACAAGGTAGACAAGGGCATAGGTTGGAAGACCCGATATGTACAAACCTTTTGTAAACATGAAGGTCTAAGCAGTGCTGATAGTGGTTGTGCGTCTCATTTGTCTGTATTGCGGTCGTGCGCCCATATGTGATTCCTGGGTTGTTTTTTGACTGCAATTTCACTGTTTTGACTGTGTTTTATTTGTTTCTTGTCTTtgcatttgtttgtgtgtttttaggGATCTTTGCCTTCAAATGTGTGCGGGCAGAGGAGATCTTCAATATGCTGCAGGAGGTAATGCACAGCCACAGCATCAGTGTGGTGGAGGAGGCCGTGCTGGAGGCCAACCACCAGTCTGCTCTGGGCTACTCTGTCCCCACCGTGCCCAATGGTGTCACCCGGATCCCTTCGGTGGGCGACACCCCCTCGCACCCCTCCACGCGCCACCCGTCTGTGGCCAGCACCCGCCTGCCCTCGGTGGGAGAGGAGTCCTCACACCCCCTGCTAGTGGCTGATGATGCGATCCACACCTATGTGAACACCACAGGTCTGCTGGATGACCAGCCTAGCCCTCTGACTGTTCCAGCCCCCCTGGACAGCCCCGACTCAGGCCAGTCCCAGTGTTCCCCTACACCCCCCCCTCCACGGGTAGCCAGACCAGAGCCTCTGCCCCCCATGCCCCAGCTCCAGGAAGAGCCCCAGGTACTGCTCGAGCCCCTGGGGGTGCGCTTCGTGCTGGGACCCACCCCTGTGCAGAAGAAGATGGCCAAGGGGAAGCAGTCTActgggggtggagatggagaggaggcagaggaggaccCAGAGTCCCCAGATCTCGGAGAGGGGGAGACAAACAGCCACACCGACACACACTGTGCCACAGAGGCCCCAGCCCTACTGGAGGGCCAGTCTCAGCCGCCCCACACACACTCCAACGGCACCTCTGTCGGGGTTACTGCCCCAATAACAGCCCCCCGCCTCCAACGCACGCCCCCCGACACCCTGCAGAATGTCAACAACTCAGCCCAGCGACGCACGGCCCTCTTGGACTATGAGAACCTCCCGGCTCTGCCGCCCGTTTGGGAGACCCGCAAGCCCAGCAACGAGGAGGTGGAGAACAATGGAGGCGGCCAGGGGGGGCTGAAGACGCCATCCCTCAACggctacaaccaccaccaccactcctacTCCCACCCCCTGTCAGCCTACCCCTCTCTTTCGGCCATGGAACCCTCCCACAACTACGTCAACACAGAGAATGTGACGGCTCCTCTCAGCGCCCGCTGTGCCCCCGACATGGTACGCCGCCGCACCGACGGACCCACCATCTTCAACTTTGACTTCCGCCGGCCGTTGGGGCTGCTGTGTCAGGAGCCTCCCAAGACGCTCAACTACATCGAGGTGGAGATGGAATCTACCACCACCTCTTCATCCGCAGCTGCCAAGGGTGCCTCCTCAGACACCAGCAATCCCCACACACCCCGCACCCCCACCTCGCCGCTGCCACCTACCACCCCCACGCGCCGCACCGAGCTCTACGCCTTCATTGACATCGAGCGCACCGCCGCCATGTCAAGCCTGCAGAAGGCTCGGCCGCGCGACGACGGAACGTCGAGGAAAACGCGGCACAATAGCACGGAGCTGCCCACCAAAAGCACTGTCTGACTGAACGGATCCTCCTTGCACCTTTTTCTACTATGAACCCCTttagaaaaaaaatatgaaaaaaatgtGAAGGCAGTCTACACAGGGGACTTTCTTAATAAACACAGGCCATGGAGACATTGGAAATGTATTCAAAGAGACTCCAGAAATCGGTCTTAAATGAGATTTAAACAGACTTTCTGTTGTGTGTGGTTGGTTACCAAAGTAGGTACTTACTTGCGATATACCAATTTATTCCTATGGTAATATAATACCTCTTCTCCTTCACTCATTCTTCAGTGCATTTGGGTTGTTTATTATGTTAATAAGACTGGACTGCATtcctcctcacccccccccccccccccccccccctttctattGGTACAAATCAGAATTTTTGAACAAAGCATTCCATTTAGCCATTTTGAATGATATGATTCACTACATGCATTGCTGCTGTAATTTCAGTATCTGAGGATTACATGGTACACTACATGTTTCTGACTATGTACATTAGATCCTGGCACAATAAATGTCTGTTCTGTTTTTATGTA

Function

NR:

description
fibroblast growth factor receptor substrate 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576555.2 False 2480 mRNA 0.56 7 89883357 89894419
XM_021576565.2 True 2965 mRNA 0.52 4 89884951 89894419

Neighbor

gene id symbol gene type direction distance location
LOC110499409 LOC100380677 coding upstream 112 89830922 ~ 89883245 (+)
LOC110499385 LOC106561542 coding upstream 90258 89772599 ~ 89793099 (+)
LOC110499364 LOC106561540 coding upstream 143139 89728940 ~ 89740218 (+)
LOC110499288 LOC106561532 coding upstream 305912 89555573 ~ 89577445 (+)
mphosph6 mphosph6 coding upstream 381008 89500512 ~ 89502349 (+)
LOC110499430 LOC106561547 coding downstream 29872 89924291 ~ 89929501 (+)
LOC110502295 LOC106561548 coding downstream 42727 89937146 ~ 90043824 (+)
asz1 LOC106561550 coding downstream 236121 90130540 ~ 90170115 (+)
wnt2 LOC106561551 coding downstream 288862 90183281 ~ 90196936 (+)
cpa5 cbpa1 coding downstream 683501 90577920 ~ 90594338 (+)
G201243 NA non-coding upstream 7275 89823696 ~ 89876082 (+)
G201241 NA non-coding upstream 60994 89821773 ~ 89822363 (+)
G201235 NA non-coding upstream 75594 89806925 ~ 89807763 (+)
G201142 NA non-coding upstream 166940 89622891 ~ 89716417 (+)
G201267 NA non-coding downstream 4313 89898732 ~ 89898970 (+)
G201268 NA non-coding downstream 4683 89899102 ~ 89899321 (+)
G201275 NA non-coding downstream 12351 89906770 ~ 89907191 (+)
G201287 NA non-coding downstream 15662 89910081 ~ 89910283 (+)
G201322 NA non-coding downstream 63966 89958385 ~ 89959871 (+)
LOC110499234 rbl2 other upstream 460919 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2015390 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 2346429 87535936 ~ 87536928 (+)
G198784 NA other upstream 2386622 87493623 ~ 87496735 (+)
G198575 NA other upstream 2732867 87150202 ~ 87150490 (+)
G202039 NA other downstream 552699 90447118 ~ 90447573 (+)
G202185 NA other downstream 822523 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1342606 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1471918 91366282 ~ 91543765 (+)
G203414 NA other downstream 1727582 91622001 ~ 91624293 (+)

Expression


Co-expression Network