LOC110499439 (LOC106561546)


Basic Information

Item Value
gene id LOC110499439
gene name LOC106561546
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89901507 ~ 89922720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110499439
GGCGGTATATTTCCTTGTCAATCCCACAACTCAATGCGGGGAAGATGGCGGCGGTTTTAGAAAGGAGTTTCATAGAAATAAATCGGTTTGAGAAGGAAACCCTACCAACATTCCGGGAAATAACTGTAGACCTAGGTCTGAATACTCTTCCTGGCAGTGTGATATACCCAGACAGCGCAGGAGGCTTTCACTATGAGGGAAGTGGAAAACTCCTGTCCATCACTAGCAACAGATTCCTACActgGTCCACCTCCGGGGACACAGTGCAGCTGGTGGAGCAGTCTCTGGACACCAACCTACTGAACAGTGCTGTTAAACTCAAGATCACACACTGCCCTCTGCTGCCCGGAGGCGTACACATCCAGGAGACCCTCAACAATGTCACCATCCTCATCGTCACCAACCAGGCTGTGCACTGGTTGGTGCTGCCACACCCCACACGCATGTACAGCGGTGAGCtggtgacagagctccagatgCAGTCCATATTTGCAGACGTGGGGAAAATTTGTCTGCAGGACCCGGCCCACAGCGGAGTCATCCCCAGCCCTGTGGGCCAGACAGTAGGCCCCACCGCCTCAGCAGCCTGGCTCAGCCACCAGGGAGAGGCCCATTACGCCCTTGCATCACCTGCAGGGGGTATCCTGGTCGTCACACTGCCCCCACACAACACACAGGCCAGCTTGACCATTCTGGAGCTGAAGACAAGCTCTGTGATGCAGAGGCTGGCTGCCAACTGCCCAACCCTGGTTCTTTTgttcgtgtgtatgtgtgttctgtCCAAAGGTGAGCAGGGCCCTGGGGACCTGGCCTTGAGTCTGGCAGTAAGGGAACTGGAGGACGACACCTTCATCTTGGCTCTGTGTCAGGACCATAAACTATGCATGTGGTCCTATAGGGACCAGGCATGTCTGATGGAGGCTGACATGTTGGAATACATGCCAGCGTGCCGGGGGTGAAGCGTTCCCCAGGACAGGGCCATCGGCTGCGGCTAACCTTCTCCTCCACGGGGCTGTGTCTGGCCATCTACCTGGCTGTACCTTCCAGGGGACAGTTCACTGtgctgcagctggtggccacagaCAACAACCGCTACAGCCTGGACCACATCTCCTCACTGTTCGCCACACAGGAGACACTGGTGGACTTTGCTCTCACTTCTACGGACATCTGGGGCCTGTGGCTGGACGATACCAACCAAACCGTGGTGAAATACATCAACTTTGAACATTCCACAGCAGGTCAGTGGAACCAGGTGTTTGTGCAGCCTGGCCCTGAGGAAGAGGTCCACATCGGAGCAGACCAGGACCCCAGGATAATTTGTCCTATCTATTGTGTTATGACAGGAGACTTCCTGGACATGCTCTTCTCCCCCCTGAGATTCACTGCCTCTGCTATAGTCAAAGCCCTTCAGATTTACAGGAGAGGCACAGAGTGAATCACTGATCTCCCATGGGAGACCCTCAAGAAAGAGGTGACGGTCGCTGTGGAGAAGGAGctgcaaagcagtgtgacagagTTTGAGTTCAGCCAGGAGGAGTACAGGCAGCTACAGGTGGAGTTCTGGTCCAAGTTCTAGTTCTGTGCCTGCTGTCTACAGTACCAGGAGGGTCTGGCCACACCACTGGGCCTGCTGCTCAacccacatacacacatggtTTGTGTGCTGAAGAAGGGCTTTGTGTCATTCCTGGCGCCCTGCTTTGCTGTGGAGCACCTGTATTTTGATGAGTACCTGTTCTCAGAGGAAGAGACACCTGTGGCTGAGGACCCGGAGGTTGGTCGTGACGTGCTGCAGCTGGTGCAGTGTCTGAGGCTGGTGAGTGACGCGGTGCCGGGGGAAATGGCCTACAAGATGGAGAAAGCCCTGGAACATCTCCAGTCACCTGAGAGGGCTGGAGAACTTACTGGCCAACAACAAGTCAAATGTGATCGAGGACATCCATAACAAACTACAGGACGTCCAAATGAACCCTTTGGCAGCCATGGCCATGCTGATCAGAGAGATGGACCTGGAGACTGACTCGGAGCCAGGAGGAGAAGGGTCTCTCACCATAGCAGGCCAGTCCCTGTCGTGGCGGAGCAGTCTGTCCCAGCTGTATGGTAGCAGTGTGGCGGTAGCTGTGGTGTGTCAGGCTGTCTGTCAGATGGccatgaccagagccctgttctgtAGGGACCTGCTCATACTGCAGCAGCTCTACCTACGTCTAGGAGACAATatGTTCCCGGGTGGAGGGCCTCAGCTGCTACAACAGGACCTGATCCCCCGCTCCACTCAGCTTCTCTCCTCCTACTATCTCCTCAAACACATCACCCAGAGCCTGACCACCACCGTGCCTCTTGACATCATAGATGCCAACCTACAGCACCTGTCAGTCCTGGAGCTGTCTGATTCTCCAGCTATGGCTAGCAACAGATCAGTCCGGAGCCCCCAGACGGTGGTGGAGCTGTTCTACCAGAGCGTAGCATGGAAGGCCATCATTACCCAAATCTACTCTAAGCAGAACAGCCCCTCCCCGGGCACAGCCCTGCTCCACTGGCCCCACATGGTCTCCAGCATGGTCACCCTGCTGGCTCGGCAACTCTGGCCCAACAACCTTAGCTTCCAGTTCCCTGAGTGTCTGATGGGCAACTGCCAGTACGCACAACTACAGGAGGATGTGCGTCTCATTGGGCCGTGGTGTCAGGTTAACGTGGGCTCCTGCCGCTTCATGCTGGGCCAATGTTACCTGGCCAACTGAGAGGGACAGAAGGCACTGCAGTGTTTCCAGGAGGCGGAGGAGTTTCTTCTGAGATTGACAGGAGCCGAGGAGGAAGCTGCACCGGGACTACAGTACTACAAGGTGCTGCGGTTGCTGGAGTACGTTGGTCTGCCAGAGCTGGTCATCCATCTAGCCACTCTGGCCATCACGGAGGCCGTCAATGACCCCAGGAGTCAGGCTGCCCTGTGGACCCGCATCTTCAAGCATCACCTGGACCTAGGACACAACAGCCAAGCCTACGAAGCCCTCACACAGAACCCTGACTCCAGCAGCCAGTTAGACTGTTTGCGTCAGCTTGTTGTGGTTCTGTGTGAGCGTTCTCAACTTCAGGACCTGGTCCAGTTCTCCTACGTCAACCTGCACGATGAggtagacacacatacagtagtggccaaaaAGGCCAGAGCAGTGGACCTGATGTCCCACAACTACTACGAGCTGCTCTACGCCTTCCACATCAACAGACACAACTACAGGGAAGCGGGTAGGGTGATGTTTGAGTACGGCATGCGTCTGGGCCGGGAGGTGAGGACTCAACTGGGTCTACAGAAACAGGTCAACTGTTGCCTGGCCTCCCTCAACTGTCTACGGCTTATCAGATCTGACTACGCCTGGATTGTCCAACCCACCTCTGGAGCGGTGTATGAGAGGCCCGCTGCATCACCAAAGAGGAACTACGATGGAGAGTTTACTACTGGTCCAGTGGGTGGTCAGATAGACATCCTGGAGCTGAAGGAACTTCAGGAGTACGCCCTTGCCCGTAGCCACCTCACCTTGGCTCAGCATCACCCACCCTCTGCTGCCATTGCAGGCAGCGCCTCTGCAGTGGAGATGGTGTCCCTACTGGTCCAATCAGGACTATTCGactgtgccctctctctctgccagaccTTCAAAATCTCCCTCACTTCAGTCTTCGAGGGACTTGCCTGTGTATAAAGTTACAGTACGGTGGAGAGGAGAATCAGAATGAAGCCTGGAACTGGCTGGCTGCCAATCAGCTGTGTACCATCACAACCAAAGAGTCAAGTGCGACAGATGAGGCGTGGCGACTTCTGACCGCTTACCTGGAGAAGCATCCTACTCAGAATGCTCAGCACCATCGCTGTGTCATCAACAAGCTGCTGTCACACGGTGTACCGCTGCCTGGCTGGTCAACGCCTACAAGGGGGTGGATGCTGCAGCGTTGTTACGGCTCTACCTGAACTACGACCTGCTGACGGGAGCAGTTGAGCTGGTGTTGGAGTATGTAGATGCCCTCCTGGGGAAGGGACACCAGTACTTTGGCATCAAGGTACActatacactaagtgtacaaaatattaggaacacctgctctttacatgagactgaccaggtgttagctatgatgtcacttgttaaatccacttcaatcggtgtagatgaaggagaggagacaggttaaagaaggattgttaagccttgagtCATGGAATATGTGTCCCATTCATCGGGTGACTGGGCAGGACAAAATAACGGTATGGTAGGTGTCGGGTGCACCTGTTTGTGTCAATAACTaaaacgctgctgggtttttaacactcagtttcctgtgtatcaagaatggtccaccatccaaatgACAtctacacaactgtgggaagcattggagtcaacatggaccagcatccctgtggaacgctttcgacaccttagagtccatgccccaacgaattgaggctgttgtgagggcaaaaggggatgcGACTCAataattaggaaggtgttccgaatgttttgtacactctgtgtacgTCACTTCCCATGTTTATGATGCATGGTTGTTTTACCCATCTTAGTTGAACACACTTGATTCTTATCTCTAGAGAAGGTTCTTGTCCTTTAATTGTTTCTCTCTGGTAATGGTGTTGTACAGAGGCCCCTCTCAGCCACAGCGCCGTTGGGTTGGCTCCCATACACATCCATCGACCAGCTCCTCCAGTCGCTCACCGAGACCCAGACCAACGCCAGAATGTATAAGAAACTGCAGGACAAGCTGAATGACTACCACAAACGACGAGGAGAAGGCTCCAGGCCCAGTAGAAGCACCGTCTGTCAGTCAAAACACAGCACTGCTTGCATCTAGATTCTACTCTGCTaccaaagtgtgcacttgcacactcAGTCTTGGATTtcaaagcattggattggtgtaagaATTGGCTGGGGGATGTTTCTGCCATTGCTAATTCCATGACGGGGAAGATGGAGGTGGGTGGAGAATCGGGTACAGCCTGGCCCCACTGCCCCTCCAGGTGCTGTCACTATGGCCATGACTCTGTGGAACACAAAACAGACTCAATGGAAGGGAAATGCATGTATTTTTGTATTAAGGGTAAATTAAACTGACTAATTCGTA
>TU228335
ACAACCTTAGCTTCCAGTTCCCTGAGTGTCTGATGGGCAACTGCCAGTACGCACAACTACAGGAGGATGTGCGTCTCATTGGGCCGTGGTGTCAGGTTAACGTGGGCTCCTGCCGCTTCATGCTGGGCCAATGTTACCTGGCCAACTGAGAGGGACAGAAGGAGGGCATAGACCcatccacttgggagccaggccctgcCAATCAGGAGTTTTTCCCCACGAAAGGGCTTTATTACGGACATAAATACTACTgttttatcagctgtctgggtggctggtctcagacgatcccgcaggtaaagaatccagatgtggaggttctgggctggcttgattacac

Function

NR:

description
PREDICTED: nuclear pore complex protein Nup160-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110499439 False 5145 mRNA 0.54 29 89901507 89922720
TU228335 True 340 lncRNA 0.39 3 89909009 89909683

Neighbor

gene id symbol gene type direction distance location
LOC110499401 lgr5 coding downstream 80653 89793119 ~ 89820854 (-)
LOC110499378 LOC106561541 coding downstream 138135 89751743 ~ 89763372 (-)
tph2 tph2 coding downstream 153362 89740189 ~ 89748145 (-)
LOC110499336 LOC106561536 coding downstream 192277 89610237 ~ 89709230 (-)
LOC118944147 NA coding downstream 253993 89647462 ~ 89647514 (-)
LOC110499460 LOC100136366 coding upstream 121976 90044696 ~ 90125003 (-)
LOC110502310 st7 coding upstream 274511 90197231 ~ 90298528 (-)
LOC110499482 LOC100380720 coding upstream 377826 90300546 ~ 90321779 (-)
met LOC106561553 coding upstream 415423 90338143 ~ 90427147 (-)
cav1 LOC106561554 coding upstream 530976 90453696 ~ 90463528 (-)
G201735 NA non-coding downstream 1572 89899650 ~ 89899935 (-)
G201734 NA non-coding downstream 5233 89895967 ~ 89896274 (-)
G201733 NA non-coding downstream 5574 89895423 ~ 89895933 (-)
G201699 NA non-coding downstream 18269 89882814 ~ 89883238 (-)
G201700 LOC100380677 non-coding downstream 27496 89872987 ~ 89874011 (-)
G201804 NA non-coding upstream 100324 90023044 ~ 90055065 (-)
G202227 NA non-coding upstream 255564 90178284 ~ 90178513 (-)
G202233 LOC106561551 non-coding upstream 261601 90184321 ~ 90184541 (-)
G202239 LOC106561551 non-coding upstream 268137 90190857 ~ 90191116 (-)
G202240 NA non-coding upstream 270616 90193336 ~ 90193617 (-)
LOC110499346 vps4a other downstream 291617 89606837 ~ 89609890 (-)
G198912 NA other downstream 2575038 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2997551 86903036 ~ 86903956 (-)
G197554 NA other downstream 3937842 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 4058014 85831239 ~ 85843493 (-)
G202279 NA other upstream 454837 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1666492 91589212 ~ 91591049 (-)
G204024 NA other upstream 1864467 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2475340 92398054 ~ 92443838 (-)
G205192 NA other upstream 3039324 92962044 ~ 92962934 (-)

Expression


Co-expression Network