LOC110499460 (LOC100136366)


Basic Information

Item Value
gene id LOC110499460
gene name LOC100136366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90044696 ~ 90125003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958645.1
ACAGTCAGAAAATCACAAGCGCTGGGTCATCCTCGAGAAAAAGGGAAGCAGAGGGACACAAATGTGAGCGACACAGCGAGGTGCAGTGATTTCACAGGTGCAGTGAAATCAAACTGGCGGTTCTCTTAGGATGCAGAAGTCACCGGTGGAAGATGCAAACTTCCTCTCCAAATATTTCTTCTGGTGGACATCTCCACTGTTGAGGAAGGGCTTCAGAAAGAAGTTGGAGTTGACAGATGTTTATAAAGCACCATATTTTGATCTCGCAGACAATCTTTCTGAACGACTAGAAAGAGAATGGGACCGAGAAGTGGCATCGGCCAAGAAGAAGCCTCGGCTCTTGCGGGCACTCTCCCGTTGTTTCCTCTGGCCTTTTGTGTTCTACGGAATCCTGCTGTACTTTGGGGAGGCGTCGAAGACAGTGCAGCCCCAGCTCCTGGGTCGTATAATCGGCTCGTTTGACCCCATCCATGCCCCTGAGCGGGAGCAGGGTTACTACCTAGCCCTGGGTCTCTGTCTTCTCTTCACTGCTCGCTTCCTGCTCCTGCAGCCAGCCATCTTTGGACTGCACCACCTGGGCATGCAGATTCGCATCGCTCTCTTCAGCCTCATTTATAAGAAGACTCTGAAGCTGTCCAGCCGGGTCCTGGACAAGATCAGCACAGGTCAGCTGGTTAGCCTGATGTCAGCCCACCTCAACAAGCTGGATGAGAGTCTTGGCCTGGCCCACTTTGTGTGGATCACCCCTCTGCAGTGCATCCTGTGTGTGGGATTGATCTGGGAGCTGATCGAGGTGAATGGTTTCTGTGCCCTGGCTGCCCTCACCCTGCTGGGCATCATACAGGCCTGCCTCTCTCAGAAGATGGGGCCTCACAGGCAGAAAAGAGCAGGGTTAATCAGCAGGCGTCTGGCTCTGACCTCAGAGATCGTAGAGAACATCCACTCAGTGAAGGCCTACGGCTGGGAGGAGGTGATGGAGACCATCATCAAGAACATCAGACAggATGAGATGACGCTGACGAGGAAGATTGGTTCTCTGCGGTACTTCTACAGTGCCTCCTACTTCTTCTCTGCCATCCTGGTCATTGTGTCAGCTATCGTGCCCCACGCCCTCAGCAAGGGCATCATCCTGAGAAGTATCTTCACAACTGCCTCTTACCTCATGGTGCTCCGTATGACCCTCACCAGACAGCTGCCCGGCTCCATACAGATGTGGTACGACACCCTGGCGCTGGTCACAAAGATAGAGGAATACCTCTGTAAAGAGGAGTACAAAGTATTAGAGTACAACCTGACCACCACTGAGGTAGAGCTGGTGAACGTGACCGCCTCCTGGGATGagggTATCGGGGAGTTGTTTGAGAAGATAAAGCAGGAGAACAAGTCTAACGGCCACCCTAACGGTGACGTAGGGCTGTTCTTCACCAACCTATATGTTACTCCTGTCCTCAAGAACATCAGCCTGTATCTGGAGAAGGGACAGATGCTGGCCGTGGCTGGGTCCACCGGCTCGGGAAAGAGTTCCCTGCTAATGATGATCCTGGGAGAGCTGGTCCCGTCAGAGGGGAAGATCAAACACAGTGGGCGGATCTCCTTCTCCCCCCAGACCTCCTGGATCATGCCCGGAACCATCCGTGACAACATCCTGTTTGGTCTGACCTACGACGAATTCCGCTACACCTCTGTCATCAAGGCATGTCAGCTGGAGGAGGATCTGGCCCTGCTGCCGGAGAAAGACAAGACGCCCCTTATGGAGGGAGGGGTGACCCTTAGTGGAGGTCAGAGGGCAAGGATAGGTCTGGCCAGAGCCGTGTACAAGGATGCTGACCTCTACCTGTTGGATTCGCCTTTCACCCACCTGGACATTGTGACGGAGAAAGAGATCTTTGAGAGGTGTCTGTGTAAACTGATGTCCTCCAAGACTCGTATCGTGGTCACCAGTAAGCTGGACCACCTTAAGAGAGCAGACAAGATCCTTCTGCTTCACAACGGAGTGTGTTACTTCTACGGCTCCTTCTCCCAGCTGCAGGCCAAGAGACCAGACTTCAGCTCCCTGCTCCTGGGCCTGGAGGCCTACGACAACATCAAAGCCGAACGCCGCAGCTCCATCCTCACCGAGACCCTCCGACGTGTCTCCATCGACGAATCCGCTGTCCTCCGTGGCCACGAGCCCATCCGCCAGTCCTTCCGCCAGCCCCCGCCTTCGGTCATCAACGGCAACACGGGACCTCAAGGCATCACCATCGCCGGGGGCGACGGTCTCACAGTGGTGGAGAAACGTAAACAGTCGATTATCTTAAATCCATTAGCAACGGCACGTAAGTTCTCCTTCATCGGTACTGGGCCCCAAAACAGCCAGGCTCCAACCCCAGGGTCCACTACCATCGAGGATGGCGTGCGGGAGCTGTCGGAGAGGAAGTTCTCTGTGGTGCCCGAGGATGATCAGgTGGAAGAGTCGCTGCCCCGGGGGAACCTGTACCACGACGGTCTGCAGCACCTGAGCGGGCAGCGGCGCCAGTCTGTGCTGCAGTTCATCACCAACGCACAAGGGCAGGGCAGGAGGGAGCAGCTCCAGACATCCTTCAGGAAGAAGCTGTCCGTCACGCCGCAGTGCGAGCTGGCCTCTGAGCTGGACATTTACGCACGACGCCTGTCCAAAGATAGTGTCTATGACATCAGTGAGGATGTGGATGAGGAGGACATGGAGCAATGCTTTGCAGACGAGCGTGAGAACGTGTTTGAGACGACGTCGTGGAACACCTATCTGCGTTACATCTTCACCAACAGGAACCTGGTCTACGTCCTCATCTTCATCTTCCTCATCTTCGCTCTCGAGGTTGCTGGCTCTGTCCTGGGGATATTTCTTATCACAGATAAGATCTGGACAGAGGAGGCCAACCCATCGGCGCCTAACTACGTAGACCAACAACACTCCAACGCCTCGTCACCTGCCATCCAACAGTCAGTCATCGTCACGCCAACCAGCGCCTATTACATCATCTACATCTACGTGGCGACGTCGGAGAGCGTTCTGGCGCTGGGGTTCTTCAGAGGCCTGCCACTGGTCCACACCTTACTGACCGTGTCCAAGAGGCTGCATGAACAGATGCTCACTGCTGTGCTCAGGGCCCCCATGGCTGTACTCAACACTATGAAAACAGGTCGGATCATGAACAGGTTCACTAAAGACATGGCCACCATCGACGACATGCTTCCTCTTGTACTGTTTGACCTCATCCAGTTAACTCTGATCGTGTTGGGAGCAATCTTCACTGTGTCCATCATGCGGCCGTACATCTTCATCGCCGCAATCCCATTGGCCGTCATATTCGTGGTCCTGAGGAAGTACTTCCTGCGTACCGGACAACAGCTGAAACAACTAGAAGCTGAGGCCCGAAGCCCTATCTTCTCTCACCTCATCATCTCTCTAAAGGGTCTGTGGACCATCCGTGCGTTTGGACGTCAGTGCTACTTTGAGACGTTGTTCCACAAGGCCCTGAACACCCACACGGCCATATGGTTCCACTACCTCTCCACGTTGCGATGGTTCCTCTTCCGCTGTGACATcatcttcgtcttcttcttcagCGCCGCAGCCTTCATCGCCGTGGGAACCAACCaGGACAAGCCTGGGGAGATTGGCATCATCGTGGCCTTAGCCATGCTTATCCTTGGTACGTTCCAATGGGCTGTCATCACCAGCATCACTGTGGACGGACTGATGCGATCGGTAGATCGGGTCTTCAAGTTCATCGACTTGCCGCAGGAGGAGCCTAGACCCAGTGGTGGTGGTAAAGTCACAGACCTGGTCCTCGACAACCCCCACGCACAAGACTGCTGGCCCAACCAGGGCCACATGGATGTCCAGGGGCTGACTGTCAAGTATACAGAGGCCGGACGCTCTGTGCTGCAGAACCTGTCCTTCACCGTGGAAGCGGGCCAAAGTGTGGGTgtgttggggaggacgggctcaggGAAGAGCACCTTGCTCTCTGCCCTGCTGCGCCTGGCCTCTACAGATGGAGAGATCTCCATTGACGGGGTCTCCTGGAACTCTGTCACACTACAGACATGGAGAAAAGCCTTCGGAGTGGTGCCACAGAAAATCTTCATCCTGACTGGAACATTCCGAATGAACCTGGATCCGCACGCTTGCCACAGTGACGAGGAACTGTGGCGGGTGGCTGAGGAGGTGGGTCTGAAGTCCGTGATAGAGCAGTTCCCAGACAAGCTGGACTTCCAGCTGGAGGACGGGGGTTATGTCCTGAGTAACGGACACAAGCAGCTCATGTGTTTGGCCCGCTCCATCCTCAGCAAGGCCCGCATACTGCTGCTGGACGAACCCAGCGCCTACCTCGACCCCATAACATTGCAGGTCCTGAGGAAGACGCTGAAACAGTCTTTCTCCAACTGTACAGTCATACTGTCAGAACACAGAGTGGAACCACTGCTGGAGTGCCAGTCCTTCCTGatGATCGAGGGCAGTTCTATGAAGCGGTATGACTCCATTCAAAAGCTTTTGAACGAGACCAGCCACCTGAAGCAGGCCATAAGTGCTGCTGAGCGCCTCAAACTATTTCCCCTGCACCGTCTCAACTCCAGCAAGCGACCGCCTCAATCCCAGCAGCCCAAGATCACCGCCCTGCAAGAGGAGGCTGAGGACGAGGTCCAGGACACACGTCTGTAAGGAGGAGCACCTGACTAACTGGATGACATTTTGTCTTCTGAAATGCTCTTTCTCAATTGAACTTTCCTCGTTTccttgcatcctctctcctcgacTCCTTTTCAAAACACATTGGAGAAGTAGGCCTGGGAGGAGGGACCttggaccttctcctccaatatgGTTAAGACGGAGGTAAGGAGATAGGATGCAAGGAGTTGTGAAAAGACAAACGGAGAAAGAGCCAAGTTCCCTTTAATGTAGATGATAACAGTGTGAATGTGAGATGTGGTCTGTCCCTTTCTTTGGCGGGTCCTTATTGGTACAGGTATGGCTCTGTTCAGTCAAAAACACCATCCAGGTGTTTCCAGAGGGAGGTTTTGTTGAATTTTAATAACATTGGGATGCTAGTTTTGTTTGAATATAACCCCATACTTTTTGGCCAAGATTGTAAAGTATAGTGTCCCTAACCCCAATGGAAAGCTGCCTGTAAATACAGAGTACGATGAAGTTGCTCACAGACACTGATCTGAGTTTTGTTTCCCTCTCAATGCTTAAGGTTAGTGCCTCAGGGCAACTTATATTCAAAGCTGTAAATACACAAAACAGGAATGAGAATGATGGGTGATGCTATGGACAAGTGATTCACCTGAAGTAGCCTTATTTGTTCTATTTGTATGCACTTTAAAGATAGCTGAGGTACTCTTTAGTTTTTTCATGGTGGTCTGGCGGGTTAATAGCAAGGAAAATAAATGATCAAAtgcaaaaaaagaaagaaaaaagaaaccCGCTTTTTTAAATGTGATTTGTCAAGCGTCCTTTGTTACTGTGGTTACTGGTCAGACTGAATTCTAACTGTGACAATGGCAGAGTTTTTTACAGTGTAAATGAAAAAACAAAGCTATTTCTTATTCATAGGAAAGGGACACACATGTCCAAAAATGTTTAAACGACGTGTTTTGTTTTTCCAGAATCAAGAATATTTTGTTTTCAATTGATTATATTTCcagtaaaaatatttttaaaaaa

Function

NR:

description
cystic fibrosis transmembrane conductance regulator-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05031 CFTR, ABCC7; cystic fibrosis transmembrane conductance regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958645.1 True 5695 mRNA 0.52 29 90044696 90125003

Neighbor

gene id symbol gene type direction distance location
LOC110499439 LOC106561546 coding downstream 121976 89901507 ~ 89922720 (-)
LOC110499401 lgr5 coding downstream 223842 89793119 ~ 89820854 (-)
LOC110499378 LOC106561541 coding downstream 281324 89751743 ~ 89763372 (-)
tph2 tph2 coding downstream 296551 89740189 ~ 89748145 (-)
LOC110499336 LOC106561536 coding downstream 335466 89610237 ~ 89709230 (-)
LOC110502310 st7 coding upstream 72228 90197231 ~ 90298528 (-)
LOC110499482 LOC100380720 coding upstream 175543 90300546 ~ 90321779 (-)
met LOC106561553 coding upstream 213140 90338143 ~ 90427147 (-)
cav1 LOC106561554 coding upstream 328693 90453696 ~ 90463528 (-)
cav2 LOC106561555 coding upstream 339683 90464686 ~ 90470189 (-)
G201735 NA non-coding downstream 144761 89899650 ~ 89899935 (-)
G201734 NA non-coding downstream 148422 89895967 ~ 89896274 (-)
G201733 NA non-coding downstream 148763 89895423 ~ 89895933 (-)
G201699 NA non-coding downstream 161458 89882814 ~ 89883238 (-)
G202227 NA non-coding upstream 53281 90178284 ~ 90178513 (-)
G202233 LOC106561551 non-coding upstream 59318 90184321 ~ 90184541 (-)
G202239 LOC106561551 non-coding upstream 65854 90190857 ~ 90191116 (-)
G202240 NA non-coding upstream 68333 90193336 ~ 90193617 (-)
G202247 NA non-coding upstream 112565 90237568 ~ 90241681 (-)
LOC110499346 vps4a other downstream 434806 89606837 ~ 89609890 (-)
G198912 NA other downstream 2718227 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 3140740 86903036 ~ 86903956 (-)
G197554 NA other downstream 4081031 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 4201203 85831239 ~ 85843493 (-)
G202279 NA other upstream 252554 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1464209 91589212 ~ 91591049 (-)
G204024 NA other upstream 1662184 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2273057 92398054 ~ 92443838 (-)
G205192 NA other upstream 2837041 92962044 ~ 92962934 (-)

Expression


Co-expression Network