wnt2 (LOC106561551)


Basic Information

Item Value
gene id wnt2
gene name LOC106561551
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90183281 ~ 90196936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576610.2
CCAAACACGTCAAATGTTTTTGTTAAAACACTCAGGGTTTAACGCATCACATTGTACTACATTCTACAACTTGCCGCTTGGAAATCGGCCAAGCTTGTGTCTGGTGTCAAGCTAGCCTGAACAGATACTTTCAGACATCTAATTTCTTCACCTCATTCCTGAGACAGAACTGCGCCCACCCCTTGTGTAAGCAATTTAAACCTGATAGCAGACGATCATTTGCCTATCTTTACACTGCAAATCTTTGTTCACTTCAGATCGACCCAATATCTCATGCGCTTCTTTACCATAATCATTGTCATTTTTTACGCGCAAAACTCCACCCGGGCGGTAAACCTCTTCTGATTATCGATTTTTAATGCAAGACAGAGCAGAACTTTGATTGGTGCAATCGAGAGGCTGTAGACTCCTGTCTGACGCGCGCCTGTGTTCTTTTCTACCCATGGAAATGGTCAGTACAGGTGCCTGAATGTGCACAACGACAACATTTTAATAATATGAACTTATTGCCAAGTGgagtatgtttttatttatctgtAGCAATCTGCTGGCTAACGTCAAGGGTCGACGGATCTTGGTGGTACATGGGTACCCTCGGGTCGCAAGTGATGTGCGACAACATCCCCGGGTTAATCAACAAACAGCGGCAGCTGTGCCGCCAGCATCCCAAAGTTATGCAGGCGATTGGAGCCGGGATTAAAGACTGGATCGGGGAGTGCCAACATCAGTTTCAGAACCACCGCTGGAACTGCAATACCATGGCGCGAGAACACAACTTGTTCGGACGCCTACTGCTGCGTAGCAGTCGTGAAGCGGCCTTTGTGCACGCCATCTCCTCGGCCGGGGTGGTCCACACGCTGTCCCGGGCTTGCAGCCAGGGAGAGCTGCAGTCGTGCTCCTGTGACCCCACCAAGAAGGGCTCGTCCCGGGACGCCAAGGGGATGTTCGACTGGGGCGGCTGCAGCGACCATGTGGAGCACGCCATGAGGTTCAGCCAGTCCTTCATAGACGccaaagagagaaaggagagagacgcCAGGGCTCTGATGAACCTCCACAACAACCGCGCTGGGAGAAAGGCGGTGAAGCGGTTTATGTCCCTGGAGTGTAAGTGTCATGGCGTGAGCGGCTCCTGCAGCGTCCGGACCTGCTGGCTGGCCTTGGCCGACTTCCGCCGCACGGGCAACCACTTGCGGCGGCGCTACAACGGGGCGGTGCAGGTGGCCATGAACCAGTATGGCACGGGCTTCACCACCGCACAGCGACACTTCAAACGGCCCAGCAAGAACGACCTGGTCTACTTCGAGGACTCGCCAGACTACTGCATAAGAGACCAAGAGTCTGGATCGGTGGGGACAGGAGGGCGGGTGTGCAACCGGACGTCTCGCGCCGTAGACAGCTGTGAGGTTATGTGCTGCGGCCGGGGCTACGATACAACACGCGTCAGCCGCACCACCAAGTGTGAGTGCAAGTTTCACTGGTGCTGCGCTGTGCACTGCCGGGACTGCAACCAGGAGATGGACGTGCACACCTGCAAGGCCCAAACATGACTATACCACCAACCAACCTCTTATCCAGATTTGGTCTgaaatggcaacctatttcctatggtgcactacttttgagtagC

Function

NR:

description
protein Wnt-2

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0072574 hepatocyte proliferation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00182 WNT2; wingless-type MMTV integration site family, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576610.2 True 1630 mRNA 0.54 5 90183281 90196936

Neighbor

gene id symbol gene type direction distance location
asz1 LOC106561550 coding upstream 13166 90130540 ~ 90170115 (+)
LOC110502295 LOC106561548 coding upstream 139457 89937146 ~ 90043824 (+)
LOC110499430 LOC106561547 coding upstream 253780 89924291 ~ 89929501 (+)
LOC110499418 LOC106561545 coding upstream 288862 89883357 ~ 89894419 (+)
LOC110499409 LOC100380677 coding upstream 300036 89830922 ~ 89883245 (+)
cpa5 cbpa1 coding downstream 380984 90577920 ~ 90594338 (+)
LOC110499537 LOC106561558 coding downstream 397514 90594450 ~ 90599294 (+)
poc1b poc1b coding downstream 410154 90607090 ~ 90667412 (+)
dusp6 dus6 coding downstream 504477 90701413 ~ 90706025 (+)
si:dkey-106n21.1 LOC106561561 coding downstream 596312 90793248 ~ 90868325 (+)
G201851 NA non-coding upstream 46911 90136141 ~ 90136370 (+)
G201848 NA non-coding upstream 52310 90130768 ~ 90130971 (+)
G201379 LOC100136366 non-coding upstream 113038 90069290 ~ 90070243 (+)
G201279 NA non-coding upstream 147329 90034953 ~ 90035952 (+)
G201349 NA non-coding upstream 168234 90014776 ~ 90015047 (+)
G201886 NA non-coding downstream 5943 90202879 ~ 90206418 (+)
G201898 NA non-coding downstream 11325 90208261 ~ 90211007 (+)
G201944 LOC100380720 non-coding downstream 103661 90300597 ~ 90321713 (+)
G201968 LOC106561553 non-coding downstream 141222 90338158 ~ 90340558 (+)
G202007 NA non-coding downstream 214649 90411585 ~ 90432515 (+)
LOC110499234 rbl2 other upstream 760843 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2315314 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 2646353 87535936 ~ 87536928 (+)
G198784 NA other upstream 2686546 87493623 ~ 87496735 (+)
G198575 NA other upstream 3032791 87150202 ~ 87150490 (+)
G202039 NA other downstream 250182 90447118 ~ 90447573 (+)
G202185 NA other downstream 520006 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1040089 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1169401 91366282 ~ 91543765 (+)
G203414 NA other downstream 1425065 91622001 ~ 91624293 (+)

Expression


Co-expression Network