LOC110499482 (LOC100380720)


Basic Information

Item Value
gene id LOC110499482
gene name LOC100380720
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90300546 ~ 90321779 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576618.2
GGATATGAATGTGGCATTTGTTGCCGAATCCTCCCATTTGATGACGTCAGATGTGGCTTCTACAAGCTGGTGGTGCCGGAAGAAAAGATGGCGGATCATGAAGAGCAGTTATCTGATGAGGAGAAGGTACGCATAGCAGCAAACTTTGTCATCCACGCCCCACCGGGAGAGTTCAACGAAGTTTTCAATGATGTACGATTGCTGCTCAACAATGACAATCTGCTCAGGGAAGGTGCAGCACATGCTTTTGCACAGTACAACGTGGACCAGTTTACCCCGGTGAAAATAGAGAGATATGACGAACAGgTCTTAATCACAGAGCATGGAGACCTGGGCAATGGGCGGGTCCTTGACCCTAAAAACAAGATCTCCTTTAAGTTTGACCACCTGAGGAAGGAGGCCAGTGACCCGCGGCCCCACGATGTGGATGGAGCCATGGAGGGCTGGAGGAGTGCTGTGGATGGTGCTGTCCGGGCCTACGTCAAGGAGCACTACCCCAGCGGAGTCTGCACTATTTACGGCAAAACCATAGACGGACATCAAACCATCATCGTGTGTATCGAGTGCCATCAGTTTCAACCCAAAAACTTCTGGAACGGACGTTGGAGGTCAGAGTGGAAATTCACAATTGGCTCCTCCTCCACTCAAGTGGCCGGCATCATGAaaatccagGTTCATTACTATGAAGACGGCAACGTTCAGCTGGTCAGCCACAAAGAGGTCCAGGAGTCAATGTCCATTTCTAACGAAGCTGCAACTGCAAAGGAGTTCATTAAGATCATTGAGGCTGCAGAGAATGACTACCAGACTGCCATCAACGAGAATTACCAAACCATGTCGGACACCACTTTCAAAGCCTTGCGCCGCCAGCTTCCCGTGACGCGCACCAAGATTGACTGGAACAAGATCCTGAGCTACAAGATCGGCAAGGAGATGCAGAACGCTTAAAACAAACAAAACGGAAAACCCCAACATTGCATGACTGGATTGTTGTATCGTCTTTGTACAAATTAGATGAATGGGGGGCAGAAAAGGTTTGGTCTCACAGAAAGTCTACTTTTATGAATGCTTTTATACAGACACTGTTAAAAACATAATCTGTATAATACTTAGATGATAATCATGATATTATTGTTGGCAAAATAGGATGTGGAGGACGACGTGGAGCATAATACGTCTCAATGTATGTGTGCAATATTTATTAATATGGTGGTGAGCCCACACCTTTTCTTTGCCCTAAAGAAAAACAATTCCAATTGTAATGATGAAACCATTATTTTTTGAGGAGTatcactgtaaaatatatttagagtAGGACCTTATTGGCAAATACAGGATAAGAGAATCCTCCACTGTAGAACACGGTTACTGTCTCATACTGTAAAGAGTCCCTCAGTCGTGTTCAATTGCTCGTACTTTTATGACATCATAATGACATCTTTTGCACAAGCGGTTAGTCACCTTTGCCAATGTCTACCACTCAAGGTTCTTGTTACACTTCATATTGGTACTCTCCCCACGGTTTGCCTCATACGTGAACATCTCAAGCTTGCGACCCTCCTGGCTAAACTGCAGTTTAACTCCCTGACTTCTGAACTGAATGTTCATTTAGCAAAAAAGGAGAAACTGATAACTTGACACGCTTAATTAACAAGTCTTTAATTGCTACTAAATGTGGATAATGTTGAATTTAAATTTACAATAAAAGGTAAAAGTATCACTTTCTCCCCCAGtgcttattttttattaaaacagATCTGACTTATAACATGGCACCTTGTAATATATACCTGTATTAAACATCCTTGTCTGATG

Function

NR:

description
F-actin-capping protein subunit alpha-2

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576618.2 True 1815 mRNA 0.43 10 90300546 90321779

Neighbor

gene id symbol gene type direction distance location
LOC110502310 st7 coding downstream 2018 90197231 ~ 90298528 (-)
LOC110499460 LOC100136366 coding downstream 175543 90044696 ~ 90125003 (-)
LOC110499439 LOC106561546 coding downstream 377826 89901507 ~ 89922720 (-)
LOC110499401 lgr5 coding downstream 479692 89793119 ~ 89820854 (-)
LOC110499378 LOC106561541 coding downstream 537174 89751743 ~ 89763372 (-)
met LOC106561553 coding upstream 16364 90338143 ~ 90427147 (-)
cav1 LOC106561554 coding upstream 131917 90453696 ~ 90463528 (-)
cav2 LOC106561555 coding upstream 142907 90464686 ~ 90470189 (-)
tes LOC106561556 coding upstream 235791 90557570 ~ 90576473 (-)
cep41 cep41 coding upstream 277535 90599314 ~ 90606949 (-)
G202247 NA non-coding downstream 58865 90237568 ~ 90241681 (-)
G202240 NA non-coding downstream 106929 90193336 ~ 90193617 (-)
G202239 LOC106561551 non-coding downstream 109430 90190857 ~ 90191116 (-)
G202233 LOC106561551 non-coding downstream 116005 90184321 ~ 90184541 (-)
G202227 NA non-coding downstream 122033 90178284 ~ 90178513 (-)
G202282 NA non-coding upstream 8449 90330228 ~ 90365579 (-)
G202301 NA non-coding upstream 44837 90366616 ~ 90368419 (-)
G202304 NA non-coding upstream 48495 90370274 ~ 90407811 (-)
G202316 NA non-coding upstream 96338 90418117 ~ 90419600 (-)
G202338 NA non-coding upstream 126247 90448026 ~ 90448374 (-)
LOC110499346 vps4a other downstream 690656 89606837 ~ 89609890 (-)
G198912 NA other downstream 2974077 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 3396590 86903036 ~ 86903956 (-)
G197554 NA other downstream 4336881 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 4457053 85831239 ~ 85843493 (-)
G202279 NA other upstream 55778 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1267433 91589212 ~ 91591049 (-)
G204024 NA other upstream 1465408 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2076281 92398054 ~ 92443838 (-)
G205192 NA other upstream 2640265 92962044 ~ 92962934 (-)

Expression


Co-expression Network