cpa5 (cbpa1)


Basic Information

Item Value
gene id cpa5
gene name cbpa1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90577920 ~ 90594338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958868.1
ggagggcagagagatCTGGTAGTGCATACTGTTTCGGTCTCAAATGAGAGGGCCTATATCAACCAAACACAGCCTAAAGcTGGATGTGTGGATGGAGCCCATTGACCTCTCCACTCCTATGGACATCAGAGTTCCCTTCACCAGCCTGCAGACCGTCAAGGCCTTCCTGGAGACTGAAGACATCCCGTACTCCGTCATGATCAAGGACCTACAGgttatgttgGACGAGGAGCAGGACCAGATGCTGAGTGCACGTGCCGCTGCCCCCAGAACCACCGATGACTACGACTACTCCAACTACCACGACATTgctgatATCTATAGTTTCCAGGACATGCTTGTGGCTGAGAACCCCAATCTGGTCAGCAAGATCGTGATTGGCCAGAGTTACCAGGGACGCACCCTGAATGTGCTCAAGTTCAGTACTGGTGGAACCAACAGACCTGGTATCTGGCTTGACACAGGAATCCATTCCAGGGAATGGATCACTCAAGCTAGCGGCACCTGGTTCGCCAAGAAGATTGTGACCGACTACGGACGTGACGCCGCTCTCACTGCCATCCTGGACAAGATGGACATCTTCCTGGAGATTGTGACTAACCCCGATGGCTACTACTACACTCACAATAGTAACCGTATGTGGCGTAAGACCAGGAAGCCCAACCCTGGCTCTTCCTGTGTtggaactgaccccaacaggAACTGGGATGCTGGTTTTGGAGTAGAGCCCGGCTCCAGTGGCAGTCCCTGTTCTGAGACTTACCGCGGACCCGAAGCTCACTCTGAGTCTGAGGTCAAGTCCATTGTGGACTTTGTAAAGTCTCACGGCAACCTGAAGGCCTTCGTGTCCATCCATTCCTACTCCCAGATGCTCCTCTACCCCTACGGTTACACCAGTACCCCCTGCAAGGACCAGAGCGAACTGCACGACCTGGCCATGAAGGCAATCACTGACCTGGCTTCCATGTACGGAACCTCCTACAGATACGGCAGCACCATCAACACCATCTACCAGGCTAGTGGTATCACTGTTGACTGGACCTACAACCAGGGCATCAAGTACTCCTATACCTTCGAGCTGAGAGACACTGGTCGCTATGGTTTCATCCTACCAGCCAATCAGATCCTCCCTACTGCCAAGGAGACTTGGCTGGCTCTGATGGCCATCATGGAGCACACCAAGGACAACACCAACTAGAGGAGTGACCATGACAACCTAATGGACACTGTGAATCCACTAAGGTTGTTTACAGGCCACAAACAGAGGAATAAATGTCAACTGTTATACCTGA
>XM_021576668.2
AGAAACGACCCATCTGGTATTTCCCAGGATCTCCTGGCTGGCATGGGAAGCAAAGCAGCAGGCATCATACGCAAGTCCCCTTAAGCAAGGTCATGTGACCAGGACCATGGCATAAAAGGTGGTGGCCAAGGTGTGTGTCTCTACTCTATTGGCAATGATGAAGGGGCTGCTGGTCTTGACTGTGCTGTTTGTGGCCATTTTCGGCAAGGAAACATTTGAGGGTGACAAGGTCCTTCGAATCACTGCGAAGGATGAGGTCCAGCTCGCTCTGCTGAAGGACCTGGCTGAGATGGAACATCTCCAGcTGGATGTGTGGATGGAGCCCATTGACCTCTCCACTCCTATGGACATCAGAGTTCCCTTCACCAGCCTGCAGACCGTCAAGGCCTTCCTGGAGACTGAAGACATCCCGTACTCCGTCATGATCAAGGACCTACAGgttatgttgGACGAGGAGCAGGACCAGATGCTGAGTGCACGTGCCGCTGCCCCCAGAACCACCGATGACTACGACTACTCCAACTACCACGACATTgctgatATCTATAGTTTCCAGGACATGCTTGTGGCTGAGAACCCCAATCTGGTCAGCAAGATCGTGATTGGCCAGAGTTACCAGGGACGCACCCTGAATGTGCTCAAGTTCAGTACTGGTGGAACCAACAGACCTGGTATCTGGCTTGACACAGGAATCCATTCCAGGGAATGGATCACTCAAGCTAGCGGCACCTGGTTCGCCAAGAAGATTGTGACCGACTACGGACGTGACGCCGCTCTCACTGCCATCCTGGACAAGATGGACATCTTCCTGGAGATTGTGACTAACCCCGATGGCTACTACTACACTCACAATAGTAACCGTATGTGGCGTAAGACCAGGAAGCCCAACCCTGGCTCTTCCTGTGTtggaactgaccccaacaggAACTGGGATGCTGGTTTTGGAGAGCCCGGCTCCAGTGGCAGTCCCTGTTCTGAGACTTACCGCGGACCCGAAGCTCACTCTGAGTCTGAGGTCAAGTCCATTGTGGACTTTGTAAAGTCTCACGGCAACCTGAAGGCCTTCGTGTCCATCCATTCCTACTCCCAGATGCTCCTCTACCCCTACGGTTACACCAGTACCCCCTGCAAGGACCAGAGCGAACTGCACGACCTGGCCATGAAGGCAATCACTGACCTGGCTTCCATGTACGGAACCTCCTACAGATACGGCAGCACCATCAACACCATCTACCAGGCTAGTGGTATCACTGTTGACTGGACCTACAACCAGGGCATCAAGTACTCCTATACCTTCGAGCTGAGAGACACTGGTCGCTATGGTTTCATCCTACCAGCCAATCAGATCCTCCCTACTGCCAAGGAGACTTGGCTGGCTCTGATGGCCATCATGGAGCACACCAAGGACAACACCAACTAGAGGAGTGACCATGACAACCTAATGGACACTGTGAATCCACTAAGGTTGTTTACAGGCCACAAACAGAGGAATAAATGTCAACTGTTATACCTGA
>XM_021576659.2
GAAACGACCCATCTGGTATTTCCCAGGATCTCCTGGCTGGCATGGGAAGCAAAGCAGCAGGCATCATACGCAAGTCCCCTTAAGCAAGGTCATGTGACCAGGACCATGGCATAAAAGGTGGTGGCCAAGGTGTGTGTCTCTACTCTATTGGCAATGATGAAGGGGCTGCTGGTCTTGACTGTGCTGTTTGTGGCCATTTTCGGCAAGGAAACATTTGAGGGTGACAAGGTCCTTCGAATCACTGCGAAGGATGAGGTCCAGCTCGCTCTGCTGAAGGACCTGGCTGAGATGGAACATCTCCAGcTGGATGTGTGGATGGAGCCCATTGACCTCTCCACTCCTATGGACATCAGAGTTCCCTTCACCAGCCTGCAGACCGTCAAGGCCTTCCTGGAGACTGAAGACATCCCGTACTCCGTCATGATCAAGGACCTACAGgttatgttgGACGAGGAGCAGGACCAGATGCTGAGTGCACGTGCCGCTGCCCCCAGAACCACCGATGACTACGACTACTCCAACTACCACGACATTgctgatATCTATAGTTTCCAGGACATGCTTGTGGCTGAGAACCCCAATCTGGTCAGCAAGATCGTGATTGGCCAGAGTTACCAGGGACGCACCCTGAATGTGCTCAAGTTCAGTACTGGTGGAACCAACAGACCTGGTATCTGGCTTGACACAGGAATCCATTCCAGGGAATGGATCACTCAAGCTAGCGGCACCTGGTTCGCCAAGAAGATTGTGACCGACTACGGACGTGACGCCGCTCTCACTGCCATCCTGGACAAGATGGACATCTTCCTGGAGATTGTGACTAACCCCGATGGCTACTACTACACTCACAATAGTAACCGTATGTGGCGTAAGACCAGGAAGCCCAACCCTGGCTCTTCCTGTGTtggaactgaccccaacaggAACTGGGATGCTGGTTTTGGAGTAGAGCCCGGCTCCAGTGGCAGTCCCTGTTCTGAGACTTACCGCGGACCCGAAGCTCACTCTGAGTCTGAGGTCAAGTCCATTGTGGACTTTGTAAAGTCTCACGGCAACCTGAAGGCCTTCGTGTCCATCCATTCCTACTCCCAGATGCTCCTCTACCCCTACGGTTACACCAGTACCCCCTGCAAGGACCAGAGCGAACTGCACGACCTGGCCATGAAGGCAATCACTGACCTGGCTTCCATGTACGGAACCTCCTACAGATACGGCAGCACCATCAACACCATCTACCAGGCTAGTGGTATCACTGTTGACTGGACCTACAACCAGGGCATCAAGTACTCCTATACCTTCGAGCTGAGAGACACTGGTCGCTATGGTTTCATCCTACCAGCCAATCAGATCCTCCCTACTGCCAAGGAGACTTGGCTGGCTCTGATGGCCATCATGGAGCACACCAAGGACAACACCAACTAGAGGAGTGACCATGACAACCTAATGGACACTGTGAATCCACTAAGGTTGTTTACAGGCCACAAACAGAGGAATAAATGTCAACTGTTATACCTGA

Function

NR:

description
carboxypeptidase A1-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08779 CPA1; carboxypeptidase A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958868.1 False 1292 mRNA 0.52 10 90577920 90594338
XM_021576668.2 False 1514 mRNA 0.53 11 90578901 90594338
XM_021576659.2 True 1516 mRNA 0.53 11 90578902 90594338

Neighbor

gene id symbol gene type direction distance location
wnt2 LOC106561551 coding upstream 380984 90183281 ~ 90196936 (+)
asz1 LOC106561550 coding upstream 407805 90130540 ~ 90170115 (+)
LOC110502295 LOC106561548 coding upstream 534096 89937146 ~ 90043824 (+)
LOC110499430 LOC106561547 coding upstream 648419 89924291 ~ 89929501 (+)
LOC110499418 LOC106561545 coding upstream 683501 89883357 ~ 89894419 (+)
LOC110499537 LOC106561558 coding downstream 112 90594450 ~ 90599294 (+)
poc1b poc1b coding downstream 12752 90607090 ~ 90667412 (+)
dusp6 dus6 coding downstream 107075 90701413 ~ 90706025 (+)
si:dkey-106n21.1 LOC106561561 coding downstream 198910 90793248 ~ 90868325 (+)
kitlga LOC106561562 coding downstream 344008 90938346 ~ 90971318 (+)
G202057 NA non-coding upstream 94712 90482966 ~ 90483208 (+)
G202055 NA non-coding upstream 99273 90478428 ~ 90478647 (+)
G202052 NA non-coding upstream 105614 90472080 ~ 90472306 (+)
G202041 NA non-coding upstream 127683 90450032 ~ 90450237 (+)
G202040 NA non-coding upstream 129466 90447890 ~ 90448454 (+)
G202180 NA non-coding downstream 114238 90708576 ~ 90708831 (+)
G202514 NA non-coding downstream 141187 90735525 ~ 90735817 (+)
G202534 NA non-coding downstream 173522 90767860 ~ 90768063 (+)
G202555 NA non-coding downstream 192700 90787038 ~ 90787317 (+)
G202558 NA non-coding downstream 195114 90789452 ~ 90789667 (+)
G202039 NA other upstream 130347 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 1155482 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2709953 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 3040992 87535936 ~ 87536928 (+)
G198784 NA other upstream 3081185 87493623 ~ 87496735 (+)
G202185 NA other downstream 122604 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 642687 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 771999 91366282 ~ 91543765 (+)
G203414 NA other downstream 1027663 91622001 ~ 91624293 (+)
G203438 LOC106561592 other downstream 1074498 91668836 ~ 91671899 (+)

Expression


Co-expression Network