LOC110499537 (LOC106561558)


Basic Information

Item Value
gene id LOC110499537
gene name LOC106561558
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90594450 ~ 90599294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576675.2
ACACGAGTCCATAGAGAGTAAAGTGAGGATAACTATTTTTGTATTCTTCATATTCCCAACTCAAATGATGACATGAACTGCTACTGGACAACTTAATGATTCCGCCAATGAAAAATGTAAAGTTCATATGTTGTATCATTTTGGGTTGCATAAGTTGTTTATGTGTATCTCTCACATAGGGTGCCCATGCTAGAAAACTGGTTATGGTTTTACCAATGAAAATAAGCACCCTTTTGGGCGTGGGAAATGTGGACATTTCTAGGGAGTGGTGTGCCATATAAAcagttgtggtgtctctctgtctccaaggCTTGCGGCCTACCAAAGGTTTAAAGACGTTCAGCTGGATTGCCCAGGTCATGTGGTTTAGAAAGTTAATGGGTGTGATTAACCGATCGGAAACACATTTCACCTGGTTGAATGTACATGTACGGTGGTTTgtattagttagttagttaggtagttagttagttagcttgtTAGATAAACTACAAATAATCGGTGACAGATTTGTCTTTAAAGGAGACACAAGcagaccaattctgatattttgcccaattattggcaaaagaacTGGTCTCATTGGTGAAAAGACCAATTACGAGTGGGAAAATATCTGAATTGGGCTGTCTGTGTAAACACAGTCTTTGTTGACTTATTCCTCATCTCCTTTCTTCTTCatgtgagtatacagtatatgctCAAATAGACTCTCTGACTCAGTTCTCAAAAAAGGTTGCGGCGACCCTTGGGGGCATAGCTTTTACAGTGTAGGGATACAAACACAGGCGAACTAAGTAAATGGAATGGGAGGATAAGAACTAGACAATCTGGTCCATTTTCATCAAACTTCTGAGAATCTGCTCCACAAATACATACCATCAGTGTTACATCAGAGTCGTTGTGGAAAACGACAAAACACCTGAAGATAACATCAACTTACAAACCAAGGTAAAAAAGTGCTGGGCAGGGTGTGTGGCTCTACTGTATTAGGTACGATGAAGGTGCTGCTCGTCTTGGTTGCACTGTCTGTGGCCGTTATCGGCAAGGAGACCTTTGAGGGGCACCAGGTGCTTCGTATCACTGGGAAGGATGAGTTCCAGCACTCTCTCCTGAAGGACATGGCTGAGATGGAACATCTCCAGCTGGATGTGTGGATGGAGCCCATTGACCTCTCCACTCCTGTGGACATCAGAGTTCCCTTCACCAGCCTGCAGACCGTCAAGGCCTTCCTGGAGACTGAAGACATCCCGTACTCCGTCATGATCAAGGACCTACAGGTTATGTTGGACGAGGAGAAGGAGCAGAGGCTGAGTGCTGCACGTGCCACTGAGCCCAGAACCACAGATGACTACAACTACACCAACTACCACAACGGGGATGAGatctaCAGTTTTCAGGACATGCTGGTGGCTGAGAACCCCAAACTGGTCAGCAAGATCGTGATTGGTCAGAGCTATGAGGGCCGCCCTCTGAATGTGCTCAAATTTAGCACTGGTGGCACCAACCGTCGTGGCATCTGGATTAACACTGGAATCCACTCCAGAGAATGGATCACTCAGGCTAGTGGCACCTGGTTCGCCAAGAAGATTGTGACTGACTACGGACATGACGCCCCACTCACTGCCATTCTGGACAACATGGATATCTTCCTGGAGATTGTGACCAACCCAGATGGCTACAACTACAGCCACAAAACTAACCGTATGTGGCGTAAGACCAGGAAGCCAAACCCTGGCTCTTCTTGTGATGGAACTGACCTCAACAGGAACTGGGATGCTGGTTTTGGAACCGCTGGCTCTAGCGGTAACCCCTGCGATCAGACTTACCGCGGGCCCAAGGCTCACTCAGAGTCTGAGGTCAAGTCCATCATGGACTTTGTCAAGTCTCATGGCAACCTGAAGGCCTTCATCGACATCCACAGCTACTCCCAGAGGCTCATGTACCCCTACGGCTACACTGCAACCACTTGCAACGACCAGAGAGAACTGCACGACCTGGCTAGGAAGGCCATCACTGGCCTGGCTAGCCTGTACGGAACCTCCTTCAGATACGGCAGCGTCATGACCACCATATACCGAGCCAGTGGCATCAGTATTGACTGGTCCTACAACCAGGGCATCAAGTACTCCTACACCTTTGAGCTGAGAGACACCGGTCGCTATGGTTTCATCCTGCCAGCCAATcagatcatccctactgccaaGGAGGCTTGGCTGGCTCTGATGGCCATCATGGAGCACACCAAGGACAACACCAACTAGAGGGGTCACCATGACAACTACAGTATACATTCCAGATTAACCAATTGTATATCTCTCTTTGATACGGTCATGTGAATGCCTGTGTAAAACAAAGTTATGTTTGTCTGTACTGTTGTAGATATACAGTATCTAGCTCAAGCTGATGATACCATCCAGTCCACAAGAGTGCACTAGAAACCACGTCAGTAAAATGCTCAA

Function

NR:

description
carboxypeptidase A1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08779 CPA1; carboxypeptidase A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576675.2 True 2462 mRNA 0.47 11 90594450 90599294

Neighbor

gene id symbol gene type direction distance location
cpa5 cbpa1 coding upstream 112 90577920 ~ 90594338 (+)
wnt2 LOC106561551 coding upstream 397514 90183281 ~ 90196936 (+)
asz1 LOC106561550 coding upstream 424335 90130540 ~ 90170115 (+)
LOC110502295 LOC106561548 coding upstream 550626 89937146 ~ 90043824 (+)
LOC110499430 LOC106561547 coding upstream 664949 89924291 ~ 89929501 (+)
poc1b poc1b coding downstream 7796 90607090 ~ 90667412 (+)
dusp6 dus6 coding downstream 102119 90701413 ~ 90706025 (+)
si:dkey-106n21.1 LOC106561561 coding downstream 193954 90793248 ~ 90868325 (+)
kitlga LOC106561562 coding downstream 339052 90938346 ~ 90971318 (+)
cep290 cep290 coding downstream 558167 91157461 ~ 91213269 (+)
G202057 NA non-coding upstream 111242 90482966 ~ 90483208 (+)
G202055 NA non-coding upstream 115803 90478428 ~ 90478647 (+)
G202052 NA non-coding upstream 122144 90472080 ~ 90472306 (+)
G202041 NA non-coding upstream 144213 90450032 ~ 90450237 (+)
G202040 NA non-coding upstream 145996 90447890 ~ 90448454 (+)
G202180 NA non-coding downstream 109282 90708576 ~ 90708831 (+)
G202514 NA non-coding downstream 136231 90735525 ~ 90735817 (+)
G202534 NA non-coding downstream 168566 90767860 ~ 90768063 (+)
G202555 NA non-coding downstream 187744 90787038 ~ 90787317 (+)
G202558 NA non-coding downstream 190158 90789452 ~ 90789667 (+)
G202039 NA other upstream 146877 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 1172012 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2726483 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 3057522 87535936 ~ 87536928 (+)
G198784 NA other upstream 3097715 87493623 ~ 87496735 (+)
G202185 NA other downstream 117648 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 637731 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 767043 91366282 ~ 91543765 (+)
G203414 NA other downstream 1022707 91622001 ~ 91624293 (+)
G203438 LOC106561592 other downstream 1069542 91668836 ~ 91671899 (+)

Expression


Co-expression Network