poc1b (poc1b)


Basic Information

Item Value
gene id poc1b
gene name poc1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90607090 ~ 90667412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576649.2
AGAGTTGCTAGTTCTTATTACAGCTCAGTGGTTGCTAGTAGCAATTAACTAACAACAACTTCACTCATATTTAGCTGATTTAACCAAGGCTTCTGTGGAATTGATTAAGGTTAACTGCATGAGCCAAAGTCGTGTTTGTATGTTGATAAAAGTTGGCTGATTAGCGTATCGGCGCTCGACTAGCAAAGTCTGAGGAATTGGGCGTGCACTATGTTTTTCACTTTGACTGGCAGACAGATGGAAGTCATGAGTTGGATGCACCAACTTTCCCAGCTAATCTTTCAAAAATCAAATGCACCGCAAATGTAAGGATTATCGTAATCAATGTATTAAATGGCATCAGTTATGGAGGACCCCACCCTCGAGCGACACTTCAAGGGCCACAAAGATGCTGTCACCTGTGCAGACTTCAATTCCAAACACAAACAGCTGGCCTCAGGGTCTGCAGATAAGACCCTGATGATTTGGAATCTGAACCCTAAGGCCAGGGCGTTCCGTTTTTTTGGACACAAAGATATCATCACAGGGGTCCAGTTCTCCCCTGCAGGAGATCTGGTCGTCTCTGCATCCCAGGACAAGACTGTACGGCTGTGGACGCCCAGCATTAAAGGAGAGTCGATGGTGTTCAAAGCCCACACGGCTACAGTACGCAGTGTCAGCTTTTCTCACGACGGCCAGAGGCTAGTGACTGCATCAGACGACAAGTCTGTCAAGGTGTGGAGTGTCCACAGACAACGTTTTGTCTACTCACTCAACCAGCACACCAACTGGGTCCGCTGCGCCAGGTTTTCTCCTGACGGCCGTCTAATTGCCTCCTGTGGTGACGACCGCACAGTGCGACTGTGGGACACCGCCACCAAACAGTGCATCAACTGCTTCACAGAGTATGGAGGATCAGCAACATTTGTAGACTTCAACACCAGTGGCACCTGCATAGCATCCTCAGGAGCAGACAACACGCTGAAGATCTGGGACATACGGACAAACAAACTGCTCCAGCATTACCAAGTCCACAGTGCAGGGATCAATTGCTTTTCCTTCCACCCGTCTGGAAACTATATGATCAGTGGCTCCAGTGACAGCACAGTGAAGATCCTGGACCTGCTGGAGGGACGCCTCATCTACACCCTCCACGGACACAAGGGTCCTGTCCTGGCTGTGGCCTTCTCCAGGGGAGGAGACTTCTTTGCCTCAGGGGGTTGTGATGCTCAGGTTTTAATGTGGAAGACCAACTTTGATTCTTTTGACTACCGTGAGGTCCTGAGCAGACACAGCCAGCGGGTCAGCCCCGACCCCCCTCCTCACCTGACAGACATCTACCCTCGAGGACCACACCTCCACTCCGCCCAGTCTGGGGCTATAGAGATCAGTCCCATGGTGGCAGACACCCAGACCACTGCCCCGGCTGTCATAGAGGTGGGCCAGACCCTCTACACAGCCACTACGGCTATCAACGGCCATGCAAACAATTTGCCAGCACGACGGATTGCCAGTACCAGCCTCAACCCCAATGAAGACTGCCACAGTAGTGGACAGGGTTCGATATCTGGGTCCCAGTCCGGGCAGATGggaggcaggagggaggaggaacaggggatGAGGTACCCTCTGGAGATGCGCTCAGACCTCCCCATGAACTTCAGCAGCACCCTGGAACGCATCGTCCAGCAGCTTGACGTCCTCACTCAGactgtctctgtgttggaaGAACGTCTCACCCTGACGGAGGACAAACTGAAGGAGTGTTTATTCAACCAGAGTCAGATCCTGCTGCAGGTGCGAGGGGAGGAGATGGAccgaaggagagagagggtggaggaagagagggaaggtgaGAGCGGATCCCCTGTCGCCTCAGCCTAAGGtcacccacctccctctccacagacacacactcctccctatgacttggtcctgtgtgtgtttggtgtgtgtgtgtgtgttcggggaGGGACAGGGAATGTGGGGATCCTTAACCTCCACCTTGGTGGTCTTTCTCAGGGGTCATCGTCTTAATCAAATCCTCCCTCTATCTCGCCACTCTTTTAAAGATTATTCAATCCTACAGCACAGTGTGTCTGGGACACTTAAACCAAAGCTTTTTGGCTAGGGACTGGGGTGAGTTTTTGTACGTATACCAGTGTGTACATATGTTCATCGGTGTGTGCGCGTGAGTTTGGAAGATCTTTGTGAGGCCCCTCCGTAATGAAAGGTTGATGAAGGGGAGCGGAGGACAAGACAGCACAGCTGCAGCTATGAAAACagccggtctgtctgtctgtggacagTGAAGGGAGCAGAGCGTGCTGGGCCAGGCAGGGGCTCCCTTCACTGTCCAATTCCTCTGGTCTCCTTCTCCTGGACAGGCCACCATAAACATGCATTCCttacacctctctccctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
poc1b Acts upstream of or within several processes, including epithelial cilium movement involved in determination of left/right asymmetry; optokinetic behavior; and retina layer formation. Predicted to be located in centriole. Human ortholog(s) of this gene implicated in cone-rod dystrophy 20. Orthologous to human POC1B (POC1 centriolar protein B).

NR:

description
POC1 centriolar protein homolog B

GO:

id name namespace
GO:0003014 renal system process biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process

KEGG:

id description
K16482 POC1; centriolar protein POC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576649.2 True 2442 mRNA 0.52 12 90607090 90667412

Neighbor

gene id symbol gene type direction distance location
LOC110499537 LOC106561558 coding upstream 7796 90594450 ~ 90599294 (+)
cpa5 cbpa1 coding upstream 12752 90577920 ~ 90594338 (+)
wnt2 LOC106561551 coding upstream 410154 90183281 ~ 90196936 (+)
asz1 LOC106561550 coding upstream 436975 90130540 ~ 90170115 (+)
LOC110502295 LOC106561548 coding upstream 563266 89937146 ~ 90043824 (+)
dusp6 dus6 coding downstream 34001 90701413 ~ 90706025 (+)
si:dkey-106n21.1 LOC106561561 coding downstream 125836 90793248 ~ 90868325 (+)
kitlga LOC106561562 coding downstream 270934 90938346 ~ 90971318 (+)
cep290 cep290 coding downstream 490049 91157461 ~ 91213269 (+)
LOC110499641 LOC106561583 coding downstream 568053 91235465 ~ 91239737 (+)
G202057 NA non-coding upstream 123882 90482966 ~ 90483208 (+)
G202055 NA non-coding upstream 128443 90478428 ~ 90478647 (+)
G202052 NA non-coding upstream 134784 90472080 ~ 90472306 (+)
G202041 NA non-coding upstream 156853 90450032 ~ 90450237 (+)
G202040 NA non-coding upstream 158636 90447890 ~ 90448454 (+)
G202180 NA non-coding downstream 41164 90708576 ~ 90708831 (+)
G202514 NA non-coding downstream 68113 90735525 ~ 90735817 (+)
G202534 NA non-coding downstream 100448 90767860 ~ 90768063 (+)
G202555 NA non-coding downstream 119626 90787038 ~ 90787317 (+)
G202558 NA non-coding downstream 122040 90789452 ~ 90789667 (+)
G202039 NA other upstream 159517 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 1184652 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2739123 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 3070162 87535936 ~ 87536928 (+)
G198784 NA other upstream 3110355 87493623 ~ 87496735 (+)
G202185 NA other downstream 49530 90716942 ~ 90717421 (+)
mgat4c LOC106561589 other downstream 698925 91366282 ~ 91543765 (+)
G203414 NA other downstream 954589 91622001 ~ 91624293 (+)
G203438 LOC106561592 other downstream 1001424 91668836 ~ 91671899 (+)

Expression


Co-expression Network