si:dkey-106n21.1 (LOC106561561)


Basic Information

Item Value
gene id si:dkey-106n21.1
gene name LOC106561561
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90793248 ~ 90868325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958890.1
TTATGTTGTCTTTACAGGTCTGTACGTCTCATATCTGATTGGAGGTTAACTTTACAGTAATGCTGTTGGTCAACAACTCAGATGTTGTAAAGGGGTCTCAGATTCATtgtatctttctctttttttgtTCCTGAACTGCTGTGGTCCAGAGTTTCTCTGAGTTTTCcagtgagtgtgtagtgtgtggagaAGTTTGAGGGGTCCCTGTGAGCCTCAGCGTCCAGCCACCACTGTCTCTGTGCCTACGCACCAGCATGCATCTTACCCAGGACCCGAAAGTTGAGATAGGATTGAGCGATCAGGGGACGGTCAACCCTGCCTTTGGGGGCCCAGACAGTGGTCAGTCAGAGAGGATTGACATGGATGGGGCTCACACGGAGGGTCTGGAAGAAGGTCAGGAGGACCAGAACAAAGGCCTGGACCTGGTCTACTCCATCAATGATAGGCCACCATGGTATCTCTGCATCCTGCTGGGCTTCCAGCATTATATCCTGGCATTCGGTGGCATAATTGCAGTGCCTCTGATCCTGGCCGAGCCTCTCTGTATTGGAAACAACAACGCCGCCAAGAGCCTACTCATCTCCACCATATTCTTTGTGTCGGGTGTGTGCACATTGCTCCAGACCACTATCGGAACCAGGTTGCCAATCCTCCAGGGGGGTACCTTTAGCTTCATCACCCCCACTCTGGCCATACTTGCTCTGCCTAAGTGGCAGTGCCCTGCCCCCAGTGCAATGTCCCAGCAGCTTCAAAATGCCACTGGCTCCCTGCTAATGGACTCTGATGAGGTGTGGAAGTTACGCATGAGAGAGATCCAGGGGGCCATCTTGGTGTCTTCCATGCTCCAGCTAGTACTGGGCTTGTCAGGTCTAGTTGGTCTGGTGCTGAAGTTTATCGGGCCCCTGGCCATCGCTCCCACCATCAACCTCATTGGCCTCTCACTCTTCATAGAAGCTGGGAAGAAATCTGGGGCCCACTGGGGAATAGCTGCCCTGACAGTGTGCCTCATCCTTCTGTTTTCTCAGTACCTGAGCAAAGTTGAAGTTCCTTTGATTGCTTACAAGGATAAGAAGTGGGAAGTGTTCCAGTATCCTCTCTTTAAGCTGTTTTCAGCTTTGTTTGGGATGTGTGGTGCCTGGTTGGTCTGCTTTTTGCTAACCATATTTGAAGCCCTTCCCTCTCAGCCGGACCAGTATGGCTACACAGCCAGGACTGACGTGAACCTGGATGCCATCACCAGCGCACCATGGTTCCACGTCCCATATCCAGGCCAATGGGGCATGCCCACAGTGAGTGTGTCCTCGGTGTTAGGCATGATGGCTGGCGTCCTTGCCTCCACCATGGAGTCCATTGGGGACTACTATGCCTGTGCCCGTCTGTCCGGTGCCCCTCCTCCGCCCACCCACGCAATCAACCGGGGTATCGCTGTGGAGGGCATTGGCTGCATCCTGGCAGCGCTGTGGGGCAGCGGGAACGGCACCACATCCTATAGCCAGAACATTGCAGCACTGGGCATCACTAAAGTTGGCAGCAGACTGGTCCTTCAGACCGCTGGTCTCCTGATGATTATCCTAGGACTCGTTGGGAAGTTCGGGGCCGTTTTCATCACCATCCCAGACCCGGTCATCGGAGGCATGTTCCTCGTCATGTTTGGAATGATTGCAGCTGTGGGAATCTCCAACCTTCAGTACGTGGACCTGAACTCCTCCAGGAACTTACTCATCTTGGGCTTCTCAACCTTCAGTGGCCTGGTGCTGCCTACCTGGTTCCACTCAAACCCAGGCATCATTGACACAGGGGTAAAAGAACTCGACCAAGTTATAGTTGTTCTCTTCACTACGCATATGTTCATCGGTGGGTTCTTTGGATTTGTATTGGACAATACGATTCCAGGCACTGAAAAAGAGAGGGGCATTAAAAGTTGGCGTAAGAAAGTGACAGAGGAAGGCAGCACGATGACAGAACGGTCCTGCTACGATATACCTTTTTGTACTAACTGTTTACAGAGGTTCAAGTTCTTCCGGTACCTGCCTTTCCTTCCATCTTACAAGTCTCCAGAACTTAGAACATAAGAATGTCTCCAGACTTaactggaccccaggaagactagcggTGGCTAAGGTGCCAACTAATGGAGATCTGAAGAATAAAGAACAAAGAACTTGTGATTAGCACACTGTTTGCATCACTAGTATTCTCCACCACACTTTTAGACTGAGTCTGCCAGCAGCTGTGGCTTTACTGCCAATGGCATCATAACACAGGGTGGTGGGTACAGACTTGGAACTGTCACACACCTGGTTCTTCTCTCTTATTTGTCAAAATCCAATGCAATTCGCAAATGCAAATAAATTACATATTTAAGTCAA
>XM_021576696.2
TATACAACAACTTTTTGCTAGTGATTCAACTTTGGTTCCCTTGACAACATGACGGGACTCTTCATGCTTTCCTAAGGTCCAGAGTTTCTCTGAGTTTTCcagtgagtgtgtagtgtgtggagaAGTTTGAGGGGTCCCTGTGAGCCTCAGCGTCCAGCCACCACTGTCTCTGTGCCTACGCACCAGCATGCATCTTACCCAGGACCCGAAAGTTGAGATAGGATTGAGCGATCAGGGGACGGTCAACCCTGCCTTTGGGGGCCCAGACAGTGGTCAGTCAGAGAGGATTGACATGGATGGGGCTCACACGGAGGGTCTGGAAGAAGGTCAGGAGGACCAGAACAAAGGCCTGGACCTGGTCTACTCCATCAATGATAGGCCACCATGGTATCTCTGCATCCTGCTGGGCTTCCAGCATTATATCCTGGCATTCGGTGGCATAATTGCAGTGCCTCTGATCCTGGCCGAGCCTCTCTGTATTGGAAACAACAACGCCGCCAAGAGCCTACTCATCTCCACCATATTCTTTGTGTCGGGTGTGTGCACATTGCTCCAGACCACTATCGGAACCAGGTTGCCAATCCTCCAGGGGGGTACCTTTAGCTTCATCACCCCCACTCTGGCCATACTTGCTCTGCCTAAGTGGCAGTGCCCTGCCCCCAGTGCAATGTCCCAGCAGCTTCAAAATGCCACTGGCTCCCTGCTAATGGACTCTGATGAGGTGTGGAAGTTACGCATGAGAGAGATCCAGGGGGCCATCTTGGTGTCTTCCATGCTCCAGCTAGTACTGGGCTTGTCAGGTCTAGTTGGTCTGGTGCTGAAGTTTATCGGGCCCCTGGCCATCGCTCCCACCATCAACCTCATTGGCCTCTCACTCTTCATAGAAGCTGGGAAGAAATCTGGGGCCCACTGGGGAATAGCTGCCCTGACAGTGTGCCTCATCCTTCTGTTTTCTCAGTACCTGAGCAAAGTTGAAGTTCCTTTGATTGCTTACAAGGATAAGAAGTGGGAAGTGTTCCAGTATCCTCTCTTTAAGCTGTTTTCAGCTTTGTTTGGGATGTGTGGTGCCTGGTTGGTCTGCTTTTTGCTAACCATATTTGAAGCCCTTCCCTCTCAGCCGGACCAGTATGGCTACACAGCCAGGACTGACGTGAACCTGGATGCCATCACCAGCGCACCATGGTTCCACGTCCCATATCCAGGCCAATGGGGCATGCCCACAGTGAGTGTGTCCTCGGTGTTAGGCATGATGGCTGGCGTCCTTGCCTCCACCATGGAGTCCATTGGGGACTACTATGCCTGTGCCCGTCTGTCCGGTGCCCCTCCTCCGCCCACCCACGCAATCAACCGGGGTATCGCTGTGGAGGGCATTGGCTGCATCCTGGCAGCGCTGTGGGGCAGCGGGAACGGCACCACATCCTATAGCCAGAACATTGCAGCACTGGGCATCACTAAAGTTGGCAGCAGACTGGTCCTTCAGACCGCTGGTCTCCTGATGATTATCCTAGGACTCGTTGGGAAGTTCGGGGCCGTTTTCATCACCATCCCAGACCCGGTCATCGGAGGCATGTTCCTCGTCATGTTTGGAATGATTGCAGCTGTGGGAATCTCCAACCTTCAGTACGTGGACCTGAACTCCTCCAGGAACTTACTCATCTTGGGCTTCTCAACCTTCAGTGGCCTGGTGCTGCCTACCTGGTTCCACTCAAACCCAGGCATCATTGACACAGGGGTAAAAGAACTCGACCAAGTTATAGTTGTTCTCTTCACTACGCATATGTTCATCGGTGGGTTCTTTGGATTTGTATTGGACAATACGATTCCAGGCACTGAAAAAGAGAGGGGCATTAAAAGTTGGCGTAAGAAAGTGACAGAGGAAGGCAGCACGATGACAGAACGGTCCTGCTACGATATACCTTTTTGTACTAACTGTTTACAGAGGTTCAAGTTCTTCCGGTACCTGCCTTTCCTTCCATCTTACAAGTCTCCAGAACTTAGAACATAAGAATGTCTCCAGACTTaactggaccccaggaagactagcggTGGCTAAGGTGCCAACTAATGGAGATCTGAAGAATAAAGAACAAAGAACTTGTGATTAGCACACTGTTTGCATCACTAGTATTCTCCACCACACTTTTAGACTGAGTCTGCCAGCAGCTGTGGCTTTACTGCCAATGGCATCATAACACAGGGTGGTGGGTACAGACTTGGAACTGTCACACACCTGGTTCTTCTCTCTTATTTGTCAAAATCCAATGCAATTCGCAAATGCAAATAAATTACATATTTAAGTCAA

Function

NR:

description
solute carrier family 23 member 2-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14611 SLC23A1, SVCT1; solute carrier family 23 (nucleobase transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958890.1 False 2369 mRNA 0.51 13 90793248 90868325
XM_021576696.2 True 2302 mRNA 0.51 12 90793826 90868325

Neighbor

gene id symbol gene type direction distance location
dusp6 dus6 coding upstream 87223 90701413 ~ 90706025 (+)
poc1b poc1b coding upstream 125836 90607090 ~ 90667412 (+)
LOC110499537 LOC106561558 coding upstream 193954 90594450 ~ 90599294 (+)
cpa5 cbpa1 coding upstream 198910 90577920 ~ 90594338 (+)
wnt2 LOC106561551 coding upstream 596312 90183281 ~ 90196936 (+)
kitlga LOC106561562 coding downstream 70021 90938346 ~ 90971318 (+)
cep290 cep290 coding downstream 289136 91157461 ~ 91213269 (+)
LOC110499641 LOC106561583 coding downstream 367140 91235465 ~ 91239737 (+)
mgat4c LOC106561589 coding downstream 497957 91366282 ~ 91543765 (+)
rassf9 rassf9 coding downstream 714259 91582584 ~ 91591130 (+)
G202558 NA non-coding upstream 3581 90789452 ~ 90789667 (+)
G202555 NA non-coding upstream 5931 90787038 ~ 90787317 (+)
G202534 NA non-coding upstream 25185 90767860 ~ 90768063 (+)
G202514 NA non-coding upstream 57431 90735525 ~ 90735817 (+)
G202180 NA non-coding upstream 84417 90708576 ~ 90708831 (+)
G202656 yo84 non-coding downstream 88085 90956410 ~ 91052753 (+)
G202732 NA non-coding downstream 174967 91043292 ~ 91044226 (+)
G202844 NA non-coding downstream 384035 91252360 ~ 91254789 (+)
G203197 NA non-coding downstream 411426 91279751 ~ 91279959 (+)
G202185 NA other upstream 75827 90716942 ~ 90717421 (+)
G202039 NA other upstream 345675 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 1370810 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2925281 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 3256320 87535936 ~ 87536928 (+)
G203414 NA other downstream 753676 91622001 ~ 91624293 (+)
G203438 LOC106561592 other downstream 800511 91668836 ~ 91671899 (+)
G203551 NA other downstream 958524 91826849 ~ 91847400 (+)

Expression


Co-expression Network