kitlga (LOC106561562)


Basic Information

Item Value
gene id kitlga
gene name LOC106561562
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90938346 ~ 90971318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576707.2
ctgtaaaaaaaacaaaacaccaaCTCACTATGATCTCGCAGTACCCGTTAATGCGCTCCCTATGATGTGTATATTTGGATACCATACCTATCATCAACAGAGCTCATTGCAGCAGTTTTATAAGGTTTAAGATTATTTTCCCTGCTTGGATACTAGGCTACTGACTAGGGCATTGGATATGTGCACACCGGATGATGAAAACCCCTTTCCTCCCCGCAGAAGTAAGATAAAATAGGGTTTCGCTTACATTGGATTTACTCCTCTCATTCCATATGAAGAAGCCAAAAATTTGGATACGCGTCTGTGTCCATTTATTGCTGTGCATCACACTTGGAGTCCAGTCAAGTGAATTTGGAAACACTGTAACAGATGACATCACAAGAATTTCACTATTGAAACAAAATATACCTAAAGATTACAAGATTCCTGTGACATACGTTCCGAAAGAAGTGGGTGGAATGTGTTGGGTAGCGCTAAACGTTTTCCACTTGGAACTCAGTTTACGAGGATTAGCAGACAAGTTTGGAAGCATTTCGTCCAACAAATATAATATCAGCATATTGATCGAAATGCTGAAAGAGACAAGATATCACATGAAGAACTTGGAGGCGATCACGTATGATTTTGAGTGCCACTACAGAAATGAGCAATGGCAGACAGGACACTATTTTCATTTTGTGGAAGATTTTTTAAAAACGGCCCGTTTGAATAGAGATTTGCCAGAAGAATGTGATCCACCTCCCTGTCCCACAGCAACAATGGATACAACAATAATAACACAATACCCCACATCAGTCAACTATCCTGCCATAGAAACAGAATTCAACATGTCTGCACCAGACTCCGAAACCTGGAACGAGCCTCTGAGATTCCTGCCAGAAGTAGTGGAGAGAAGCCTCCTGTCACTACTTGTCATTCCTATTGCAGCCGTTGTATTTCTGTTTGCGTGGAAGGTGAAATCCAGGAGGAACCAACATCAGTCAGATGAACGGAACTCAGTGGAAGGAGGCCTTTTCACAGGACCAGAAGGGACTTTGGCACCTCCACTAGAGGAACCATCTGAAAAGAACAGATTGAACATCGTTGAGACAGTGTAATTATTCAAATCCTTGGAAATTGGTGTAGAGAGGAATCAtctgagaaagagaaaggaaacaAGCATAAACATAAAACTGCATTTCTTATGGATTTTTGAGGCGAAAGACTTCTTTCCTGTCTAGAAACTGCCGGTCCTCACATACTAGAACCAGAGAATGACATTGTATAGAACATCTTTGTTTTTCTTACAAGAATATTAACCCGTCGTCTACTATCAAATTTTGTCAGAAGAAGCTGAAAAGGAGACCGGATTGTCATGGAAACATCTAGAGGCGCCAATAACAGTCGAAACATGACTCAAATCACCCATAACTGCTGAAAACACAGTAAACTTTACGGGACAAAGTTGGTTTCACAAGCACTCCCATTTGCACTTTGTGTGGGTTTGGCTGGAGTGTAGATATCAGATCTACTCAAGAATGGGCCAGAAAACAAACCCCTACAAATGGCTTTCTTTTtttcgaagaaccctttttgattccaggtagaactcttttgggttccatgtagaaccctttccacagaggactGAAAAATGAATGACTACCTCTAGTCGCCCTCACCTTCCTAATCTTCTTCTCAGCAGCATTCTACTCCATTTCTATCTTCATCTGGGTCTCCATTGGACATTCCCTGAGAACAAATGTTGAAATTAGTTAGCTAGAAATATTCTCAGATCTAAGCAtctgttttgtttcatgtttttGGCTGTGTATGTACCGAATGGATGAGGTTGTgtgatatatttatttatttactcagAATGCTGACAGCACCGTGTTGCTTCggttgaaaaaaacaaaacagacaatGATTCAGCTTATCTATAAAAATACTAAATGAGCAGGAAAAGGTCTACAAGGGTGCATTATAACCCATTCTTCTGCCATGCATTAAGTCCTCATAAGCAGCACATAAGCATGTATGAACACGTGCATTATCTATATTATTAAGACAGCCATAGAGGGATGTACATATGTATGTATGATGGTGTGGTTAATTGCTTATGAATGGGTTGTACAAAAGGCTTTGGTTGGAGGtgtaaatgtacaaaaaaattgcTGCTTTGACTAACTTACATTTTACTCATTATATACATTAAGAATTCTCCCTATAGCAATCAATGGTCAAGCAAGGGTAGATACTACATATCCATATTGATTTAGATAAAAGGTTTAAGGGGTCTGATAACTCTAGGTGTTTCTATGCTCTCAATGCACAAGAAAGAGGTGGACTAGCATTAAATAAACCAGCACGGTATCAGATTCTGGAGACTGAGATTAACCACATGTATCATCAAGTACAGTATAACTCAGCTCTGGTATATTGCAGCTTAACCACCCATAAGGTATATTCTGTATGTTGCATGTAAACAACTGTATTACGGTTCAACAACATGTTAAGGTGGCTCAAAGCTATGAATTCAAGGTgagttttaaaaaaaacagtttttacttttcactccaaatcaaatgttacagCTACGAAAATATAGAGCACCCTATTCAATTGTGTTTTAAATAGTTGTCAGTAGCCTATACAGCAAGTGAACTAAGAGATTCATTTCTCAAACAAGTCTAAATACAAAACCCTGAATATAACAACGTTTTTTGAGAGGACCAGCATCTAAAATGTACCATGATTTAGAAAAGTGATATGACCTGTGAGGAGAGTGTCTAGCAATTCATCCAAAGAGGATGCATTCGATGATTCAGAGATGTATCACTGTAACTATTATATAAATTAGAAGAGTACGTAGGAAATTATTGGCATTTTTGCACAATTCAGTTAGGCATGATGAAAATTGCCCAATCCATGACATTATGCAATTGCATAAATGCAAGCTCTCAAATAAGCATGGACTGCTATTGTTGACATACATTGGCAAAGAGAGAGAACTTAAACCTTGTGTATTAAGTTAGCCAATGCAAGCTTAACCGTACTTGTACCAATACATGCATTCCCTCACTTTCGCCATTTGCCGTTCTTACCCCTTGTACCTTGTACAATCCTGGTTTTGTGCCTTGTTTGGATTTATGTTGTTGACTCCATCATGAATACAGGTGATACATTAAAATATATCATTATGCTGTTTGATCCAAGTGCAGTTGGATCATTGTGCAGTTGGATCATCATTTTATGCACAGTATTTTGTGTATGACATTTCACAAACTCACCAGGAGACAACAAAGTAAGGGCGACAAACCACTGACTAAAAAAACAACATGGAGAACAAGAGACCATCTCATCAATAGGTGTTGGTTGTCTCTCAGTGACCATGAACCAATGGGATAGATAGACCAGTCTGCTAAAAACCTAGAGAAGAGTGTTGCATCATTGCCCAACAGGTTATAATGATCTCCCACCAATGGaaatgacctggtactcatatTGGCTTTTGTATCACCACTACGTTAACCCATTACCCTTATTCCAATACATAATTGTCACTCTAATTCAAACAAATGGACCCTAAGCCTAAGTGAAAGCCATTTTAAATATCAGGACACACATTAGTTAGAGCAATAACCCTTTTCATTTGAACACGAATACTCCACAACACTAAGCTCTTATAATTCAATTCTACACTAAATAACATGTGACAGAAGAATGCATTCAAACTCCAAATTGCAATCTTGTCTGCATGTAATGTTTTAGGTGTTGTACTTTGTATAGGAAACGGTTCCACTGGTAAAACCTGTTAATTTCATCAAGTATATTTGGGTAATTTGCCTATTGGACTTTTCTCTTAGAAGAGTATTTATAGTGCAAAATGGAGTGAATGTAAAACAAATACCACATTGGTGTTCATATAATTCTGAGCAAAAGTGTCAATTTCAGCATGAGTAGCTGAAAACGCTTAGTGTGATTAACTGTTGTTTTGTTGTATTAAAGCTTTAAGAGAATTATTTTATCCCCAAAATAAATGACTTTGTATTAGGGCTGTCAGAGTTAATCACTTGACTtgagtaaaaaaattaaaatgtatGCACAATTTGTTTTTAAATCATGATTAATCGCATTGTCAGTAATTATTCAGAATACAATGAAAACGTCCaaaatacataatatatacaGCTAAAAACAAACAATGTGATGTCAAAACAAGTTGACAATGAGGTTAAAGAAAGTGTGCTTTATCAAGTTACTTGATTTTGCTAACCGTTATTTTGGACAAAATCAAGACGGCAATGCTTTTTGTATAACAATTGAGCAAATTATGAATTTACGATTAATCACAGCAAATCCAGCGATTAactagattttttatttttatcgtTTGACAGCCCGACTTTGTAATAAGCATCGTGATACATTGAAAAATTAAACATTTTTTATTGCCACAACAAAAACAGTATGTAAGCTTCTAAAGAGTCAACTTCAGAAGTTTTGCGGGTGTTTTACATATTGTATGAATGTTGTGATGAGTTGAAACATGGTTTAAGCTGTGAACAGAAATGTGGTGGCATCCcccattttcctgtctgtcttAGAGCCTATGAACACACAGAGATAGtcattgtcccaaatggcaccccattacCCTATATAattcattacttttgaccagggcccatagggctctgaccAAGAGTAATGaactatatatggaataatagGGTGCTACCATGTTGAAAAGAGCAAGAGCCCTGAAGCACTGTTCTGGTATCAGTTATATGTTATTTTACTCATTTTGGTTGAAATTAGTTGATCCCTGAACAGTGGTTTTGGTCTCTAGCTTAGTGTCCCACTATAAAAATAGAATTCCACATTTCTAATTATAGAATTGGAATTCTGTGTTCCACTCTTATAGGGGCAACAAACAGGCTTGTAGGCAGGAAGTTAATCTGGGTGCCAAAAGAAAACATCATTCCGACCCAGGCAAACGCTGGGCAACGCTACTGTATTTTTGtataaatgtaaacaaatgtatatGATGAGATATGAATAAAGTTCACATATCCAAATATT

Function

NR:

description
kit ligand-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0005173 stem cell factor receptor binding molecular_function

KEGG:

id description
K05461 KITLG; KIT ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576707.2 True 5070 mRNA 0.37 10 90938346 90971318

Neighbor

gene id symbol gene type direction distance location
si:dkey-106n21.1 LOC106561561 coding upstream 70021 90793248 ~ 90868325 (+)
dusp6 dus6 coding upstream 232321 90701413 ~ 90706025 (+)
poc1b poc1b coding upstream 270934 90607090 ~ 90667412 (+)
LOC110499537 LOC106561558 coding upstream 339052 90594450 ~ 90599294 (+)
cpa5 cbpa1 coding upstream 344008 90577920 ~ 90594338 (+)
cep290 cep290 coding downstream 186143 91157461 ~ 91213269 (+)
LOC110499641 LOC106561583 coding downstream 264147 91235465 ~ 91239737 (+)
mgat4c LOC106561589 coding downstream 394964 91366282 ~ 91543765 (+)
rassf9 rassf9 coding downstream 611266 91582584 ~ 91591130 (+)
slc6a15 LOC106561596 coding downstream 783641 91754959 ~ 91779981 (+)
G202558 NA non-coding upstream 148679 90789452 ~ 90789667 (+)
G202555 NA non-coding upstream 151029 90787038 ~ 90787317 (+)
G202534 NA non-coding upstream 170283 90767860 ~ 90768063 (+)
G202514 NA non-coding upstream 202529 90735525 ~ 90735817 (+)
G202180 NA non-coding upstream 229515 90708576 ~ 90708831 (+)
G202732 NA non-coding downstream 71974 91043292 ~ 91044226 (+)
G202844 NA non-coding downstream 281042 91252360 ~ 91254789 (+)
G203197 NA non-coding downstream 308433 91279751 ~ 91279959 (+)
G203251 NA non-coding downstream 397241 91368559 ~ 91369003 (+)
G202185 NA other upstream 220925 90716942 ~ 90717421 (+)
G202039 NA other upstream 490773 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 1515908 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 3070379 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 3401418 87535936 ~ 87536928 (+)
G203414 NA other downstream 650683 91622001 ~ 91624293 (+)
G203438 LOC106561592 other downstream 697518 91668836 ~ 91671899 (+)
G203551 NA other downstream 855531 91826849 ~ 91847400 (+)

Expression


Co-expression Network