c2h12orf29 (cssa10h12orf29)


Basic Information

Item Value
gene id c2h12orf29
gene name cssa10h12orf29
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91214667 ~ 91219570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576729.2
CTACTGTCGATTTTGGCTTTGCGCATGCTCAATAATATCTAGTGGTTACTATACCCGGAAAATAACGAGTTCGAGGCAGAACATTACTTCTCTCTTTGATCTGAATTATTCCGTATTAACGGAAGTCTGCCATAATGCGACGTTTCGGTTCTGTGCAGCAAAAGATATCTTGTGTGTTTTTGACTGAGGTGAAAGAGGAACAATCCAGAAAACGCGAATGTCAACAATTTCAGGTTGTAGCCACTGAAAATGTGAACCCTATAGCACTGGAATCGAATATTGACTGTGCACTTGCCACAGAAAAGCTGGATGGCACCTGCTGCTATGTTTCAATTTATAAAGGGCAATCATACCTCTGGGCTCGACTAGATCGGAAGCCCACCAAGCAGGCAGACAAGAGGTTCAAGAAGCATCAGTATTCCCACAAAAGTTACAAAGGTTTCACCTGGAATGTGAAAGAAGACTTTAAGACGGTTCCAGAGTCTTGGGTCCCGGCACACAGAGTTCAGCACCACAATGGACAGCCTGTACCAGATGACCACGGACACATCCCAGGTTGGGTTCCAGTGGAGAAAGACAACAAGCAGTACTGTTGGCACTCGTCTGTTGTGGACTATGATGCTGGTGTAGCGCTGGTTCTGAGGCCCAGTGCTGAGAATGAAGACCTGCTAGAGATCACCATGGTACCACTGGCTGATCTCCTGGAGCAAACCCTGGAGCTTATTGGAACCAACGTCAATGGGAACCCATATGGGTTGGGAAGTAAAAAGCAGCCTGTCCACGTCCTGGTTGCCCATGGGAGTGTACACATCAGGAACCCTCCCCCGGTGGACTACCAGCAGTTGTGTTCCTGGTTCCAGGACAGCCAGGAGGGCCGTGTTGAGGGCATTGTCTGGCACTGTAATGACGGGACACTGGTCAAGCTCCATCGTCATCACCTGGGGCTGAGATGGCCGGATGGCGACACCATCCTGAACGCTCGGCCTGTGGTCGTCCACGTCGACGGGACCATACGAGAGTATGACATCACCAGCAAGGACTTGTTTACATCTCTATCCCAGTTAAACGGACATCGCTTCAGCAGACTGCAGGACATCCAGTTTGAcccttaacctttatttaaccaggaagtccTATTTAGGTCAGAAGACCTTTATCCCTAAATCCACCAGGAGCTGCCCGGAGTCTTAAGAAACATTCCTGTTTGTAATAATTCATGGGTCGGTCAGGCTCACTTGGGGTAATAATGTCTCATAGTGATTATGTGAAGGTCTATGTCCTTAGAGTTGGAAATGTGAGATGGCAGTGCAGCAATGGCAGCTTTCTGTGTTATCActttcattcatccctccatcccattaatttttcccatagggatTTTACCCTATGACAGACAATGTCAGTATACAACAAGTTATTGCTCACGTATACCCTGTAATCATATAGCATTAGAAAGCTTAGATTCACAGCTATCCATCAGATACATTCTCGCAATGTTCAGGTCAACAGAACTTTGACCTCTATGGTACATattagatggacctgtataaattGCTTTAAAAAGGAAATCCGCATACATTTAAAACTTTGTTTAACAAGTCATGAAATTACATTTCAAATGATATATAATATTACCTACTTTGAATGCGCTAGCTACAACTATTGTAAAAATAAAATCACCCATATTGTGCCGTTGACATTAGAACATTTTAAGCTTAACCATTGAATTACATGTAATGGGGCAGCTACGCTTTTGGATTGTATCTTCGGTGATAGGAACACCACATTTCACACGCTCAGCTAGAACAGGGTTTAAAACATATTTGTAGATACAGGGCCACTACAGCATTAACCTCACTGAAGCCTTTTTCCAATATGGCCGCCAAACAACTCAATTGGGTGTTATCGGATACATTTTGCATTACCATACCTGTATGGAATATAATTGTATTAGAATACATCTTGATTTAGACTAACTATGTGTAATGGTTTGCTGCTCTCATCATCCAGATATTAGGTTAAAACGTATTGGCATTCCTATGGAATTTTACATTGTAATGTATGCAGTCGTCTGTTAATGAAAACAGTTAATATAATTTTCATCAGCTCACATCCACGTCTATTCACATGTACATATCCATGTTTGAAGATTAAATATAGCAATTACTGATCATAACAGCTTCTTGGGCATATTCTAACCACAATTATGTCAAGTCATTTAACATTGTTATATGTTATAGCACACCTGGCTAATTTGGTTGTGTATTCTACATCACTAAGAACATTTCAAGATATTGGGAATAATATCATTTTTTTCATACAGGTatggtaatgcaacatttatccAATAAGACCCTTTTTAGTTGTTTGGCGGCCATGTTGGGGGAAAAAATTATGTGGGGTTCATGCGTGAATCCTGTGATGGTCCTGAACACTCTTAAGAATGTCTCTGATGGAACGCAGAGAAAGCTACCATTGCTGTACTACTATCACACATTTTCTAACTCGAGGGACAGACCTTAAGAAATCACTGAGATGTCGTCACCACAAGAGAGCCTGACGGTCCAGATTTAGGGGCCTTGCTCCAGGACTGTAAGCTTCCATACTGTATTACCATTAGTATGGTTGAACCAGACTAAATAGTGGGGTCACCAGTCACAATGGTGAGTGCAGTGTTCAATCTGGTTTAACCTGGCTATATGTCTTCCAATATGAACGAACCTGCCCAATAAAAAGCCTGTAAATATATTGAATATGTGCAGCCTAAGTATCATGTAAATGTACATATATTTTGACCAAATATCTATTTCAAAAGCTATTCCAAATGGTTTTTGCCCTTAAATTAAAAGCACAGTTTGGCCACTGATGTACACATATGCACATTAAATCTACTTTATTGATAGAAGTAACGCAATAGAAAACGTATCAAACACAATCTAGCCAacatactgtgccttcagaaagtattcacaccccttaactttttacacattttgttgtgttgcagcctgaatttaaaatttattaaattgagattttgtgtcactggcctccacacaatacctcaatgtccaagtggaattatgtttttaaattaaaaaagaaaagctgaaatgtcttaa

Function

NR:

description
uncharacterized protein C12orf29 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576729.2 True 3122 mRNA 0.41 6 91214667 91219570

Neighbor

gene id symbol gene type direction distance location
tmtc3 tmtc3 coding downstream 57224 91046731 ~ 91157443 (-)
cep41 cep41 coding downstream 607718 90599314 ~ 90606949 (-)
tes LOC106561556 coding downstream 638194 90557570 ~ 90576473 (-)
cav2 LOC106561555 coding downstream 744478 90464686 ~ 90470189 (-)
cav1 LOC106561554 coding downstream 751139 90453696 ~ 90463528 (-)
lyve1b LOC106561566 coding upstream 7528 91227098 ~ 91230204 (-)
eif4g2b LOC106561567 coding upstream 20174 91239744 ~ 91254841 (-)
nts LOC106561634 coding upstream 341130 91560700 ~ 91581306 (-)
LOC110499699 NA coding upstream 387175 91606745 ~ 91624204 (-)
alx1 LOC106561592 coding upstream 448827 91668397 ~ 91673730 (-)
G202932 NA non-coding downstream 287655 90850730 ~ 90927012 (-)
G202884 NA non-coding downstream 432690 90781693 ~ 90781977 (-)
G202872 NA non-coding downstream 453525 90760926 ~ 90761142 (-)
G202871 NA non-coding downstream 454030 90760392 ~ 90760637 (-)
G202870 NA non-coding downstream 455248 90759183 ~ 90759419 (-)
G203162 NA non-coding upstream 18660 91238230 ~ 91238437 (-)
G203163 NA non-coding upstream 18947 91238517 ~ 91238814 (-)
G203780 NA non-coding upstream 178494 91398064 ~ 91398482 (-)
G203829 NA non-coding upstream 244740 91464310 ~ 91500557 (-)
G204018 NA non-coding upstream 540168 91759738 ~ 91801240 (-)
G202279 NA other downstream 773242 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 1604777 89606837 ~ 89609890 (-)
G198912 NA other downstream 3888198 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 4310711 86903036 ~ 86903956 (-)
G197554 NA other downstream 5251002 85959845 ~ 85963665 (-)
G203915 rassf9 other upstream 369642 91589212 ~ 91591049 (-)
G204024 NA other upstream 567617 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 1178490 92398054 ~ 92443838 (-)
G205192 NA other upstream 1742474 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 3092854 94312424 ~ 94312774 (-)

Expression


Co-expression Network